DN621607

Overview
NameDN621607
Unique NameDN621607
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length748
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN621607_ssr141 microsatellite DN621607_ssr141:141..155. BLAST: Citrus ESTs to SwissProt
Homology
BLAST of DN621607 vs. ExPASy Swiss-Prot
Match: CHK1_DROME (Serine/threonine-protein kinase grp OS=Drosophila melanogaster GN=grp PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 8.190e-23
Identity = 60/131 (45.80%), Postives = 80/131 (61.07%), Query Frame = -3
Query:  213 SFSQPTQIDDXXXXXXXXXXXXXXXXXXXXQKLVKRMTRFFVKTNVDESVCKLTAVIEKLG-YTWKSYSNGVVTVNTVDRRKALLTFKANVLAMEGGTLMDFRLSKGCGIEFKRCFMAVKREFYDSIVKTP 602
            SFSQP  +DD                     +LV+RMTRFFV T  D+++ +L   IE+LG YT K   +GVVTV+TVDR K  L FKA+++ M+G  L+D RLSKGCG+EFKR F+ +K    D ++K P
Sbjct:  371 SFSQPALLDDLLLATQMNQTQNASQNYFQ--RLVRRMTRFFVTTRWDDTIKRLVGTIERLGGYTCKFGDDGVVTVSTVDRNKLRLVFKAHIIEMDGKILVDCRLSKGCGLEFKRRFIKIKNALEDIVLKGP 499          
BLAST of DN621607 vs. ExPASy Swiss-Prot
Match: CHK1_CHICK (Serine/threonine-protein kinase Chk1 OS=Gallus gallus GN=CHEK1 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.206e-19
Identity = 48/95 (50.53%), Postives = 61/95 (64.21%), Query Frame = -3
Query:  225 KLVKRMTRFFVKTNVDESVCKLTAVIEKLGYTWKSYSNGVVTVNTVDRRKALLTFKANVLAMEGGTLMDFRLSKGCGIEFKRCFMAVKREFYDSI 509
            +LV+RMTRFF K + D S   L  V EK+GY WK      VT++T DRR   L FK N+L ME   L+DFRLSKG G+EFKR F+ +K +  D +
Sbjct:  372 RLVRRMTRFFTKLDADGSYRSLRDVCEKMGYGWKQSCTNQVTISTTDRRNNKLIFKVNLLEMESRILVDFRLSKGDGLEFKRHFLKIKGKLSDVV 466          
BLAST of DN621607 vs. ExPASy Swiss-Prot
Match: CHK1_HUMAN (Serine/threonine-protein kinase Chk1 OS=Homo sapiens GN=CHEK1 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.494e-19
Identity = 55/127 (43.31%), Postives = 69/127 (54.33%), Query Frame = -3
Query:  225 VSFSQPTQIDDXXXXXXXXXXXXXXXXXXXXQKLVKRMTRFFVKTNVDESVCKLTAVIEKLGYTWKSYSNGVVTVNTVDRRKALLTFKANVLAMEGGTLMDFRLSKGCGIEFKRCFMAVKREFYDSI 605
            +SFSQPT  D                      +LVKRMTRFF K + D+S   L    EKLGY WK      VT++T DRR   L FK N+L M+   L+DFRLSKG G+EFKR F+ +K +  D +
Sbjct:  342 ISFSQPTCPDHMLLNSQLLGTPGSSQNPWQ--RLVKRMTRFFTKLDADKSYQCLKETCEKLGYQWKKSCMNQVTISTTDRRNNKLIFKVNLLEMDDKILVDFRLSKGDGLEFKRHFLKIKGKLIDIV 466          
BLAST of DN621607 vs. ExPASy Swiss-Prot
Match: CHK1_RAT (Serine/threonine-protein kinase Chk1 OS=Rattus norvegicus GN=Chek1 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.224e-18
Identity = 55/127 (43.31%), Postives = 70/127 (55.12%), Query Frame = -3
Query:  225 VSFSQPTQIDDXXXXXXXXXXXXXXXXXXXXQKLVKRMTRFFVKTNVDESVCKLTAVIEKLGYTWKSYSNGVVTVNTVDRRKALLTFKANVLAMEGGTLMDFRLSKGCGIEFKRCFMAVKREFYDSI 605
            +SFSQPT  D                      +LVKRMTRFF K + D+S   L    EKLGY WK      VTV+T+DRR   L FK N++ M+   L+DFRLSKG G+EFKR F+ +K +  D +
Sbjct:  342 ISFSQPTCPDHMLVNSQLLGTPGSSQNPWQ--RLVKRMTRFFTKLDADKSYQCLKETFEKLGYQWKKSCMNQVTVSTMDRRNNKLIFKINLVEMDEKILVDFRLSKGDGLEFKRHFLKIKGKLSDIV 466          
BLAST of DN621607 vs. ExPASy Swiss-Prot
Match: CHK1_MOUSE (Serine/threonine-protein kinase Chk1 OS=Mus musculus GN=Chek1 PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.088e-18
Identity = 48/95 (50.53%), Postives = 61/95 (64.21%), Query Frame = -3
Query:  225 KLVKRMTRFFVKTNVDESVCKLTAVIEKLGYTWKSYSNGVVTVNTVDRRKALLTFKANVLAMEGGTLMDFRLSKGCGIEFKRCFMAVKREFYDSI 509
            +LVKRMTRFF K + D+S   L    EKLGY WK      VTV+T DRR   L FK N++ M+   L+DFRLSKG G+EFKR F+ +K +  D +
Sbjct:  372 RLVKRMTRFFTKLDADKSYQCLKETFEKLGYQWKKSCMNQVTVSTTDRRNNKLIFKINLVEMDEKILVDFRLSKGDGLEFKRHFLKIKGKLSDVV 466          
BLAST of DN621607 vs. ExPASy Swiss-Prot
Match: CHK1_XENLA (Serine/threonine-protein kinase Chk1 OS=Xenopus laevis GN=chek1 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.036e-17
Identity = 47/96 (48.96%), Postives = 62/96 (64.58%), Query Frame = -3
Query:  222 KLVKRMTRFFVKTNVDESVCKLTAVIEKLGYTWKSYSNGVVTVNTVDRRKALLTFKANVLAMEGGTLMDFRLSKGCGIEFKRCFMAVKREFYDSIV 509
            +LVKRMTRFF K N + S   L    EK+GY  K      VT++T DRR   L FK N++ ME   L+DFRLSKG G+EFKR F+ +K++  D++V
Sbjct:  371 RLVKRMTRFFTKVNAESSYSNLMDTCEKMGYVLKKSCANEVTLSTTDRRNNKLIFKVNLVEMEDRILLDFRLSKGDGLEFKRHFLKIKKKM-DAVV 465          
The following BLAST results are available for this feature:
BLAST of DN621607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
CHK1_DROME8.190e-2345.80Serine/threonine-protein kinase grp OS=Drosophila ... [more]
CHK1_CHICK4.206e-1950.53Serine/threonine-protein kinase Chk1 OS=Gallus gal... [more]
CHK1_HUMAN5.494e-1943.31Serine/threonine-protein kinase Chk1 OS=Homo sapie... [more]
CHK1_RAT1.224e-1843.31Serine/threonine-protein kinase Chk1 OS=Rattus nor... [more]
CHK1_MOUSE2.088e-1850.53Serine/threonine-protein kinase Chk1 OS=Mus muscul... [more]
CHK1_XENLA1.036e-1748.96Serine/threonine-protein kinase Chk1 OS=Xenopus la... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_06P04_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006P04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621607 ID=DN621607; Name=DN621607; organism=Citrus sinensis; type=EST; length=748bp
TTTTTTTTTTTTTTTGAATAAAATCGTTGTTAACACATGTATTCGATAGA
CAACTTCCAATTCATAAAAGTAAAAAACGTAAAGTTTGCTAAAATTAGAC
GATAAAAATGAAACGAACGACGATGAATTAAAATTACTCGTAATAATAAT
AATAAGCTAAAATTCAGTCTTAACAAAGCTCGTCAAACGATATTAACCGT
CGTCGACTGCAGCGGCGTTTTTACAATTGAATCATAAAACTCGCGTTTCA
CCGCCATAAAACATCGCTTGAATTCTATACCACAGCCTTTGGATAAGCGG
AAATCCATCAAGGTGCCTCCTTCCATCGCGAGTACGTTTGCTTTGAATGT
GAGCAACGCTTTTCGACGATCTACTGTATTTACGGTAACCACTCCATTAG
AATAAGACTTCCAAGTATATCCTAGTTTTTCGATAACAGCAGTCAATTTA
CACACGCTTTCGTCAACATTGGTTTTCACGAAGAACCTAGTCATGCGTTT
GACCAATTTTTGTAAGCAATTCAAATTCGATGAAAAAGATTGCGACGACA
GCAATTGGGTGGAAACGAGCAAATCATCAATTTGCGTAGGCTGCGAAAAT
GATACTAGACCTCCACCTCCTTTCTTCGAGTCTGTTTTGCATAAATTCAA
TTCTCCTGGCTGCGAGTATGATAATCGACCATCGACGGCGCGATAAATTG
AATATTCGTCACCCAACTCCATTTTTTGAACGGCATCAATCGCATCCG
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