CX052836

Overview
NameCX052836
Unique NameCX052836
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length799
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX052836 vs. ExPASy Swiss-Prot
Match: RHN1_NICPL (Ras-related protein RHN1 OS=Nicotiana plumbaginifolia GN=RHN1 PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 2.015e-54
Identity = 106/172 (61.63%), Postives = 134/172 (77.91%), Query Frame = 3
Query:  216 SSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 731
            SS   NL  KLVLLGD G GKS +V+RFV+GQF    + T+GA+F S T+A+ ++T VKFEIWDTAGQERY +LAP+YYRG       YDITS DSF +A+ WV+ELQK G+P++VMAL GNKADL ++R+V A++   YAE+NG+FF+ETSAKTA N+N +F EIAKRLPR
Sbjct:    3 SSSHNNLNAKLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTLAVNNAT-VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITSSDSFARAKKWVQELQKQGNPNMVMALAGNKADLEDRRKVTAEEARLYAEENGLFFMETSAKTAVNVNAIFYEIAKRLPR 173          
BLAST of CX052836 vs. ExPASy Swiss-Prot
Match: RAB5_TOBAC (Ras-related protein Rab5 OS=Nicotiana tabacum GN=RAB5 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.963e-53
Identity = 102/167 (61.08%), Postives = 131/167 (78.44%), Query Frame = 3
Query:  231 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 731
            NL  KLVLLGD G GKS +V+RFV+GQF    + T+GA+F S T+++ ++T VKFEIWDTAGQERY +LAP+YYRG       YDITS +S  +A+ WV+ELQK G+P++VMAL GNKADL +KR+V A++   YAE+NG+FF+ETSAKTA N+N +F EIAKRLPR
Sbjct:    8 NLNAKLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTVSVNNAT-VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITSTESLARAKKWVQELQKQGNPNMVMALAGNKADLEDKRKVTAEEARLYAEENGLFFMETSAKTATNVNDIFYEIAKRLPR 173          
BLAST of CX052836 vs. ExPASy Swiss-Prot
Match: RAB5A_DICDI (Ras-related protein Rab-5A OS=Dictyostelium discoideum GN=rab5A PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.222e-51
Identity = 102/172 (59.30%), Postives = 130/172 (75.58%), Query Frame = 3
Query:  216 SSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 731
            +++ K  + KLVLLG++ VGKS +VLRFVRG F    + T+GA+FL+QT+ L D TTVKFEIWDTAGQERY  LAP+YYRG       YDI S DSF +A  WVKELQ+ GSP+IV+AL GNK DL  KR+V   +  +YAE+NG+ F+ETSAKT+ N+N+LF EIAK+LP+
Sbjct:    2 NNNNKIFQFKLVLLGEAAVGKSSLVLRFVRGHFLDYQESTIGAAFLAQTVCLND-TTVKFEIWDTAGQERYHTLAPMYYRGAQAAIVVYDIRSEDSFERAIKWVKELQRQGSPNIVIALAGNKLDLAAKRKVETAEAQQYAEENGLLFMETSAKTSQNVNELFVEIAKKLPK 172          
BLAST of CX052836 vs. ExPASy Swiss-Prot
Match: RAB5C_BOVIN (Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 4.645e-51
Identity = 102/175 (58.29%), Postives = 130/175 (74.29%), Query Frame = 3
Query:  207 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 731
            N  ++  K  + KLVLLG+S VGKS +VLRFV+GQF    + T+GA+FL+QT+ L D TTVKFEIWDTAGQERY +LAP+YYRG       YDIT+ D+F +A+ WVKELQ+  SP+IV+AL GNKADL  KR V  Q+   YAE N + F+ETSAKTA N+N++F  IAK+LP+
Sbjct:   11 NGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYAEDNSLLFMETSAKTAMNVNEIFMAIAKKLPK 184          
BLAST of CX052836 vs. ExPASy Swiss-Prot
Match: RHA1_ARATH (Ras-related protein RHA1 OS=Arabidopsis thaliana GN=RHA1 PE=1 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 6.067e-51
Identity = 101/172 (58.72%), Postives = 130/172 (75.58%), Query Frame = 3
Query:  216 SSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 731
            SS  KN+  KLVLLGD G GKS +VLRFV+ QF    + T+GA+F SQT+A+ D+T VKFEIWDTAGQERY +LAP+YYRG       +DIT+  SF +A+ WV+ELQ  G+P++VMAL GNKADL + R+V A++   YA++N +FF+ETSAKTA N+  +F EIAKRLPR
Sbjct:    3 SSGNKNINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDAT-VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVSAEEAEIYAQENSLFFMETSAKTATNVKDIFYEIAKRLPR 173          
BLAST of CX052836 vs. ExPASy Swiss-Prot
Match: RAB5C_CHICK (Ras-related protein Rab-5C OS=Gallus gallus GN=RAB5C PE=1 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 6.067e-51
Identity = 102/175 (58.29%), Postives = 130/175 (74.29%), Query Frame = 3
Query:  207 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 731
            N  ++  K  + KLVLLG+S VGKS +VLRFV+GQF    + T+GA+FL+QT+ L D TTVKFEIWDTAGQERY +LAP+YYRG       YDIT+ D+F +A+ WVKELQ+  SP+IV+AL GNKADL  KR V  QD   YA+ N + F+ETSAKTA N+N++F  IAK+LP+
Sbjct:   11 NGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFVRAKNWVKELQRQASPNIVIALAGNKADLATKRAVDFQDAQTYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPK 184          
BLAST of CX052836 vs. ExPASy Swiss-Prot
Match: RAB5C_PONAB (Ras-related protein Rab-5C OS=Pongo abelii GN=RAB5C PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.035e-50
Identity = 101/175 (57.71%), Postives = 130/175 (74.29%), Query Frame = 3
Query:  207 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 731
            N  ++  K  + KLVLLG+S VGKS +VLRFV+GQF    + T+GA+FL+QT+ L D TTVKFEIWDTAGQERY +LAP+YYRG       YDIT+ D+F +A+ WVKELQ+  SP+IV+AL GNKADL  KR V  Q+   YA+ N + F+ETSAKTA N+N++F  IAK+LP+
Sbjct:   11 NGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPK 184          
BLAST of CX052836 vs. ExPASy Swiss-Prot
Match: RAB5C_MOUSE (Ras-related protein Rab-5C OS=Mus musculus GN=Rab5c PE=1 SV=2)

HSP 1 Score: 200.29 bits (508), Expect = 1.035e-50
Identity = 101/175 (57.71%), Postives = 130/175 (74.29%), Query Frame = 3
Query:  207 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 731
            N  ++  K  + KLVLLG+S VGKS +VLRFV+GQF    + T+GA+FL+QT+ L D TTVKFEIWDTAGQERY +LAP+YYRG       YDIT+ D+F +A+ WVKELQ+  SP+IV+AL GNKADL  KR V  Q+   YA+ N + F+ETSAKTA N+N++F  IAK+LP+
Sbjct:   11 NGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPK 184          
BLAST of CX052836 vs. ExPASy Swiss-Prot
Match: RAB5C_HUMAN (Ras-related protein Rab-5C OS=Homo sapiens GN=RAB5C PE=1 SV=2)

HSP 1 Score: 200.29 bits (508), Expect = 1.035e-50
Identity = 101/175 (57.71%), Postives = 130/175 (74.29%), Query Frame = 3
Query:  207 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 731
            N  ++  K  + KLVLLG+S VGKS +VLRFV+GQF    + T+GA+FL+QT+ L D TTVKFEIWDTAGQERY +LAP+YYRG       YDIT+ D+F +A+ WVKELQ+  SP+IV+AL GNKADL  KR V  Q+   YA+ N + F+ETSAKTA N+N++F  IAK+LP+
Sbjct:   11 NGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPK 184          
BLAST of CX052836 vs. ExPASy Swiss-Prot
Match: RAB5C_CANFA (Ras-related protein Rab-5C OS=Canis familiaris GN=RAB5C PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.035e-50
Identity = 101/175 (57.71%), Postives = 130/175 (74.29%), Query Frame = 3
Query:  207 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 731
            N  ++  K  + KLVLLG+S VGKS +VLRFV+GQF    + T+GA+FL+QT+ L D TTVKFEIWDTAGQERY +LAP+YYRG       YDIT+ D+F +A+ WVKELQ+  SP+IV+AL GNKADL  KR V  Q+   YA+ N + F+ETSAKTA N+N++F  IAK+LP+
Sbjct:   11 NGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPK 184          
The following BLAST results are available for this feature:
BLAST of CX052836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RHN1_NICPL2.015e-5461.63Ras-related protein RHN1 OS=Nicotiana plumbaginifo... [more]
RAB5_TOBAC4.963e-5361.08Ras-related protein Rab5 OS=Nicotiana tabacum GN=R... [more]
RAB5A_DICDI1.222e-5159.30Ras-related protein Rab-5A OS=Dictyostelium discoi... [more]
RAB5C_BOVIN4.645e-5158.29Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C ... [more]
RHA1_ARATH6.067e-5158.72Ras-related protein RHA1 OS=Arabidopsis thaliana G... [more]
RAB5C_CHICK6.067e-5158.29Ras-related protein Rab-5C OS=Gallus gallus GN=RAB... [more]
RAB5C_PONAB1.035e-5057.71Ras-related protein Rab-5C OS=Pongo abelii GN=RAB5... [more]
RAB5C_MOUSE1.035e-5057.71Ras-related protein Rab-5C OS=Mus musculus GN=Rab5... [more]
RAB5C_HUMAN1.035e-5057.71Ras-related protein Rab-5C OS=Homo sapiens GN=RAB5... [more]
RAB5C_CANFA1.035e-5057.71Ras-related protein Rab-5C OS=Canis familiaris GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_48C12_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-48C12-E23-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX052836 ID=CX052836; Name=CX052836; organism=Citrus sinensis; type=EST; length=799bp
AACATCCAAAGCACTGCAGCAAATCAGCAATCAATCTGCTCATCGCAAAA
TCACTCCATTACTAAAACCCTAATTACACATATACGTGCATACACATACT
CATATACATACTCGTTTATATATTTATTCGTACAGGTCGCATGGGTTGCT
CAGGTTCTGTTCCAGCTAGGAGTTCTGGCCAGTCCGGTGGACTTAACAAC
TTGGAAAATGCAGGATCATCTGATGCAAAAAACCTACGTGTTAAGCTGGT
TCTGTTAGGTGATTCAGGTGTTGGGAAAAGTTGTATTGTTCTCCGCTTTG
TTCGTGGCCAGTTTGACCCGACATCCAAGGTAACTGTTGGAGCCTCCTTC
TTGTCACAGACGATAGCTTTGCAAGATTCTACAACAGTTAAGTTTGAAAT
ATGGGATACAGCTGGTCAAGAAAGATATGCTGCTCTGGCACCACTATATT
ACAGAGGTGCTGCAGTCGCAGTTGTTGTGTATGATATAACTAGTCCAGAT
TCATTCAACAAAGCGCAATACTGGGTTAAGGAGCTACAAAAACATGGAAG
TCCTGACATAGTCATGGCTTTAGTTGGTAACAAGGCTGATCTTCATGAGA
AGCGAGAAGTACCAGCTCAAGATGGCATTGAGTATGCGGAGAAGAATGGG
ATGTTCTTTATCGAAACATCGGCCAAGACTGCAGATAATATAAATCAGCT
GTTTGAGGAAATTGCTAAGCGACTTCCCCGCCCATCACCTTCTTCATGAT
TGTGGATTCTGGAATCTGAACTGCTGTGTCTGCTGATGTAACGCCGAAT
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