DN621601

Overview
NameDN621601
Unique NameDN621601
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length495
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1776 contig Csv1_Contig1776:721..1215. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: TRXH_PICMA (Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 5.589e-29
Identity = 59/106 (55.66%), Postives = 74/106 (69.81%), Query Frame = -3
Query:  173 EGQVMGIHSDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIA 490
            EG V   HS   + +KL  A    RLV + FTATWCGPCR I P+F  L+ K+ ++ FLKVD+DE RDVA  W++ ++PTF FIK+GK VDKVVGA K  LERK+A
Sbjct:    3 EGNVFACHSTEGWRSKLQEAIDTKRLVAVDFTATWCGPCRVIGPVFVELSKKFPEIFFLKVDVDELRDVAQEWDVEAMPTFIFIKDGKAVDKVVGAKKDDLERKVA 108          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSJ (Thioredoxin H-type OS=Oryza sativa subsp. japonica GN=TRXH PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 4.732e-28
Identity = 55/110 (50.00%), Postives = 78/110 (70.91%), Query Frame = -3
Query:  161 EGQVMGIHSDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHAG 490
            EG V+  H+  EF+ ++  A  A ++VI+ FTA+WCGPCRFI+P+F   A K+   VFLKVD+DE ++VA ++N+ ++PTF FIK+G E DKVVGA K  L+  I +H G
Sbjct:    5 EGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVG 114          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSI (Thioredoxin H-type OS=Oryza sativa subsp. indica GN=TRXH PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 4.732e-28
Identity = 55/110 (50.00%), Postives = 78/110 (70.91%), Query Frame = -3
Query:  161 EGQVMGIHSDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHAG 490
            EG V+  H+  EF+ ++  A  A ++VI+ FTA+WCGPCRFI+P+F   A K+   VFLKVD+DE ++VA ++N+ ++PTF FIK+G E DKVVGA K  L+  I +H G
Sbjct:    5 EGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVG 114          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: TRXH1_TOBAC (Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.798e-27
Identity = 53/109 (48.62%), Postives = 75/109 (68.81%), Query Frame = -3
Query:  164 EGQVMGIHSDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHA 490
            EGQV G H   E+           +LV++ FTA+WCGPCRFI+P+  ++A K   V+FLKVD+DE + V+  W++ ++PTF FIK+GKEVD+VVGA K  L++ I +HA
Sbjct:   11 EGQVFGCHKVEEWNEYFKKGVETKKLVVVDFTASWCGPCRFIAPILADIAKKMPHVIFLKVDVDELKTVSAEWSVEAMPTFVFIKDGKEVDRVVGAKKEELQQTIVKHA 119          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: TRXH1_ARATH (Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TRX1 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.391e-26
Identity = 55/108 (50.93%), Postives = 74/108 (68.52%), Query Frame = -3
Query:  167 EGQVMGIHSDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQH 490
            EGQV+  H+   +  +L  A  +  LV++ FTA+WCGPCRFI+P F +LA K   V+FLKVD DE + VA+ W I ++PTF F+K GK +DKVVGA K  L+  IA+H
Sbjct:    5 EGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKH 112          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: TRXH_RICCO (Thioredoxin H-type OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.289e-25
Identity = 53/108 (49.07%), Postives = 71/108 (65.74%), Query Frame = -3
Query:  167 EGQVMGIHSDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQH 490
            EGQV+G H+   +  +L        L+++ FTA+WCGPCRFI+P    LA K   V FLKVD+DE + VA  W + S+PTF F+K GK +DKVVGA K  L++ IA+H
Sbjct:    5 EGQVIGCHTVEAWNEQLQKGNDTKGLIVVDFTASWCGPCRFIAPFLAELAKKLPNVTFLKVDVDELKTVAHEWAVESMPTFMFLKEGKIMDKVVGAKKDELQQTIAKH 112          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: TRXH2_TOBAC (Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.289e-25
Identity = 52/108 (48.15%), Postives = 73/108 (67.59%), Query Frame = -3
Query:  167 EGQVMGIHSDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQH 490
            EGQV+G+H+   +   L       +L+++ FTA+WCGPC+FI+  +  LA K   V FLKVD+DE + VAT W + ++PTF F+K GK VDKVVGA K  L++ IA+H
Sbjct:    4 EGQVIGVHTVDAWNEHLQKGIDDKKLIVVDFTASWCGPCKFIASFYAELAKKMPTVTFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKDELQQTIAKH 111          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: TRXH4_ARATH (Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TRX4 PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 1.425e-24
Identity = 50/111 (45.05%), Postives = 79/111 (71.17%), Query Frame = -3
Query:  161 EGQVMGIHSDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKY-TKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHAG 490
            EGQV+G H++  +  +L+ A  + +L+++ FTA+WC PCR I+P+F +LA K+ +  +F KVD+DE + VA  + + ++PTF FIK G+ VDK+VGA+K  L+ KI +H G
Sbjct:    5 EGQVIGCHTNDVWTVQLDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKKFMSSAIFFKVDVDELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGANKEDLQAKIVKHTG 115          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: TRXH_WHEAT (Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 2.430e-24
Identity = 48/110 (43.64%), Postives = 76/110 (69.09%), Query Frame = -3
Query:  158 GQVMGIHSDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHAGQ 487
            G+V+ +HS  ++  ++  A  A +LV++ FTA+WCGPCR ++P+F +LA K+   VFLKVD+DE + +A ++++ ++PTF F+K G   D+VVGA K  L  K+  HA Q
Sbjct:   18 GEVISVHSLEQWTMQIEEANAAKKLVVIDFTASWCGPCRIMAPIFADLAKKFPAAVFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEELTTKVGLHAAQ 127          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: TRXH5_ARATH (Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TRX5 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 5.414e-24
Identity = 46/110 (41.82%), Postives = 74/110 (67.27%), Query Frame = -3
Query:  161 EGQVMGIHSDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHAG 490
            EG+V+  H+   +  K+  A  + +L+++ FTA+WC PCRFI+P+F  +A K+T VVF K+D+DE + VA  + + ++PTF F+K G  +D+VVGA K  +  K+ +H G
Sbjct:    4 EGEVIACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFTNVVFFKIDVDELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEINEKLMKHGG 113          
The following BLAST results are available for this feature:
BLAST of DN621601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
TRXH_PICMA5.589e-2955.66Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 S... [more]
TRXH_ORYSJ4.732e-2850.00Thioredoxin H-type OS=Oryza sativa subsp. japonica... [more]
TRXH_ORYSI4.732e-2850.00Thioredoxin H-type OS=Oryza sativa subsp. indica G... [more]
TRXH1_TOBAC1.798e-2748.62Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=... [more]
TRXH1_ARATH3.391e-2650.93Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_RICCO1.289e-2549.07Thioredoxin H-type OS=Ricinus communis PE=3 SV=1[more]
TRXH2_TOBAC1.289e-2548.15Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=... [more]
TRXH4_ARATH1.425e-2445.05Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_WHEAT2.430e-2443.64Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3[more]
TRXH5_ARATH5.414e-2441.82Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TR... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06O24_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006O24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621601 ID=DN621601; Name=DN621601; organism=Citrus sinensis; type=EST; length=495bp
TTTTTTTTTTTTTTTTTGAAGATAAATTTTAGGAGCAAGTTATTTTTATT
CAAATACTGAAATTTTATCAGACATTATTTGCTTGGCAAACAAATGGGTA
GGAAAGGCTTGCAAGCAGATATTACTCTAAAGTTCTCATTATTCAGGAGT
GGTTTTACTGGCCAGCATGTTGTGCAATCTTCCTTTCAAGTGCACTTTTA
TCAGCCCCGACAACCTTGTCAACTTCCTTACCATTCTTTATGAAGAAAAA
GGTGGGAACAGAACCAATATTCCAGCGTGTAGCTACATCTCTTGCCTCAT
CTATGTCAACTTTCAAGAAAACAACCTTCGTGTATTTTGAGGCTAAATTT
GTAAAAAGAGGAGAAATGAAACGGCAGGGCCCGCACCATGTTGCAGTAAA
GTACAGAATCACCAGGCGCAATGCTCTAGTAGCAGCATTCAACTTAGTTT
CAAATTCACTATCTGAGTGAATACCCATTACTTGCCCTTCCCTTA
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