DN621596

Overview
NameDN621596
Unique NameDN621596
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12302 contig Csv1_Contig12302:36..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DN621596 vs. ExPASy Swiss-Prot
Match: C72A1_CATRO (Secologanin synthase OS=Catharanthus roseus GN=CYP72A1 PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.128e-52
Identity = 98/212 (46.23%), Postives = 144/212 (67.92%), Query Frame = 3 
Query:    3 EMELPLKSIALTIVIVTVLTWAWRVLNWVWLRPKKLEKFLRQQGLKGNSYRLLFGDLKENFIELKEAKARPLSLDDDIAIRVNPFLHKLVNDYGKNSFMWFGPTPRVNIMNPDQIKEIFTRINDFQKVNSI--PLSRLLIVGLATLEGEKWAKHRKLINPAFHQEKLKLMLPAFYLSCIEIITKWEKQMSVEGSSELDVWPYLANLTGDVIS 632
            +M+   K+IA TI  + V+ WAWRVL+W W  PK++EK LRQQG +GN YR L GD+KE+    +EA ++P+  ++DI  R+ P ++  +N YG+NSF W G  PR+++M P+ IKE+ T  + +QK   +  PL + L+ G+ + EG KW+KHR++I+PAF  EKLK MLPAF +   +++TKWEK    +GS E+D++P    LT DVIS
Sbjct:    4 DMDTIRKAIAATIFAL-VMAWAWRVLDWAWFTPKRIEKRLRQQGFRGNPYRFLVGDVKESGKMHQEALSKPMEFNNDIVPRLMPHINHTINTYGRNSFTWMGRIPRIHVMEPELIKEVLTHSSKYQKNFDVHNPLVKFLLTGVGSFEGAKWSKHRRIISPAFTLEKLKSMLPAFAICYHDMLTKWEKIAEKQGSHEVDIFPTFDVLTSDVIS 214
The following BLAST results are available for this feature:
BLAST of DN621596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
C72A1_CATRO2.128e-5246.23Secologanin synthase OS=Catharanthus roseus GN=CYP... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_06O21_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006O21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621596 ID=DN621596; Name=DN621596; organism=Citrus sinensis; type=EST; length=634bp
GTGAAATGGAGTTGCCTCTGAAATCCATAGCTTTGACCATTGTTATTGTA
ACGGTGCTAACATGGGCATGGAGAGTGCTGAACTGGGTGTGGCTGAGGCC
CAAGAAGCTGGAGAAATTCCTGAGACAGCAAGGTTTAAAAGGCAATTCTT
ACAGGCTTCTGTTTGGTGACTTGAAAGAAAATTTCATCGAGTTGAAGGAA
GCAAAAGCCAGACCCCTCAGTTTGGATGACGATATTGCTATTCGTGTCAA
TCCATTCCTTCATAAACTGGTAAATGATTATGGTAAGAATTCTTTCATGT
GGTTTGGTCCGACACCAAGGGTGAATATTATGAATCCTGATCAAATAAAA
GAGATATTTACCAGGATCAATGATTTTCAAAAAGTCAATTCAATCCCACT
TTCCAGGCTGCTGATAGTTGGATTGGCTACCCTTGAGGGGGAGAAGTGGG
CTAAACATAGAAAACTCATCAACCCAGCCTTCCACCAAGAGAAGCTCAAG
CTTATGTTGCCAGCATTCTACTTGAGTTGTATCGAAATAATTACAAAATG
GGAGAAGCAGATGTCTGTAGAAGGATCATCTGAGTTGGATGTATGGCCTT
ATCTTGCAAATTTGACAGGTGATGTGATTTCTCG
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