CX052821

Overview
NameCX052821
Unique NameCX052821
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX052821 vs. ExPASy Swiss-Prot
Match: HATB_ARATH (Histone acetyltransferase type B catalytic subunit OS=Arabidopsis thaliana GN=HAG2 PE=2 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 5.960e-60
Identity = 111/176 (63.07%), Postives = 144/176 (81.82%), Query Frame = -3
Query:  320 EPLDSFQHVRTCVDIQHLLAFEPIQHAINSAVSHLKQGKLSKKILAPRFVPPASTVEEVRKVLKINKKQFLQCWEILIYLRLDPVDKYMEDYTTIISNRVREDILGKDSGSTDKRIMDVPSSYDPEMSFVMFKSQNVE--TSGVQMDENQPSQEEQLKQLVDKRIKEIKLIAQKVS 841
            EP + FQH+RTC+DI  L +F+PI+  I+SAV  L +GKLSKK   PRF PP + +E+VR+ LKINKKQFL+CWEILIYL LDP+DKYMEDYT++I+N VR DILGKD  +  K+++DVPSS++PE SFV+FKS N E   + VQ+DEN+P QE+QLKQLV++RI+EIKL+A+KVS
Sbjct:  284 EPSEKFQHIRTCIDINRLRSFDPIKPDIDSAVQTLTKGKLSKKAQIPRFTPPLNAIEKVRESLKINKKQFLKCWEILIYLALDPIDKYMEDYTSVITNHVRTDILGKDIETPKKQVVDVPSSFEPEASFVVFKSVNGEEANTNVQVDENKPDQEQQLKQLVEERIREIKLVAEKVS 459          
BLAST of CX052821 vs. ExPASy Swiss-Prot
Match: HAT1_MAIZE (Histone acetyltransferase type B catalytic subunit OS=Zea mays GN=HAT1 PE=1 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.478e-34
Identity = 78/178 (43.82%), Postives = 119/178 (66.85%), Query Frame = -3
Query:  320 PLDSFQHVRTCVDIQHLLAFEPIQHAINSAVSHLKQGKLSKKILAPRFVPPASTVEEVRKVLKINKKQFLQCWEILIYLRLDPVD-KYMEDYTTIISNRVREDILGKDSGSTDKRIMDVPSSYDPEMSFVMFKSQNVETSGVQMDENQP----SQEEQLKQLVDKRIKEIKLIAQKVS 838
            P D  Q+VR+ +D   LL F+PI+ A+ + V  LK+  LSK+  + R VPPA  +E VR+ LKINKKQFL+CWEIL++L LD  D K M+++   I +R++ +ILG  SG+  KR++ +P+S++ E SF ++ +Q +E    Q  E QP    +QE+QL +LVD +I+EI  +A+ V+
Sbjct:  278 PSDYLQYVRSSIDCLRLLMFDPIKPALGAIVLSLKETNLSKRAQSLRMVPPADLMETVRQKLKINKKQFLRCWEILVFLSLDSQDHKSMDNFRACIYDRMKGEILGSASGTNRKRLLQMPTSFNKEASFAVYWTQEIEDEDEQTVEQQPEDLKTQEQQLNELVDIQIEEIAGVAKNVT 455          
BLAST of CX052821 vs. ExPASy Swiss-Prot
Match: HAT1_ORYSJ (Probable acetyltransferase type B catalytic subunit OS=Oryza sativa subsp. japonica GN=HATB PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.788e-33
Identity = 76/179 (42.46%), Postives = 117/179 (65.36%), Query Frame = -3
Query:  320 EPLDSFQHVRTCVDIQHLLAFEPIQHAINSAVSHLKQGKLSKKILAPRFVPPASTVEEVRKVLKINKKQFLQCWEILIYLRLDPVD-KYMEDYTTIISNRVREDILGKDSGSTDKRIMDVPSSYDPEMSFVMFKSQNVETSGVQMDENQP----SQEEQLKQLVDKRIKEIKLIAQKVS 841
            +P D  Q++R+ +D   LL F+PI+ A+ S VS LK   LSK+  + + VPP+   E VR+ LKINKKQFL+CWEILIYL LD  D K M+++   I +R++ +ILG  +G   KR++ +PS++D E  F ++ +Q+   +  Q  E QP    +QE+QL ++VD +++EI  IA+ V+
Sbjct:  275 DPSDYLQYIRSSIDCLRLLTFDPIKPALCSMVSSLKDTNLSKRTSSLKMVPPSDLAETVRQKLKINKKQFLRCWEILIYLNLDAEDRKSMDNFRACIYDRIKGEILGTSTGPNGKRLVQMPSNFDEETCFAVYWTQDGGDADDQTVEQQPEDLKTQEQQLNEVVDSQMEEIVEIAKNVT 453          
The following BLAST results are available for this feature:
BLAST of CX052821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
HATB_ARATH5.960e-6063.07Histone acetyltransferase type B catalytic subunit... [more]
HAT1_MAIZE1.478e-3443.82Histone acetyltransferase type B catalytic subunit... [more]
HAT1_ORYSJ2.788e-3342.46Probable acetyltransferase type B catalytic subuni... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_48C04_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-48C04-E7-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX052821 ID=CX052821; Name=CX052821; organism=Citrus sinensis; type=EST; length=843bp
TTTTTTTTTTTTTTTTTCCATAAAAGTCAAGTCTGTTTCAAATATGAAGG
GAATTACATCATAGTTTCTAAAGCCGGCAGCGAAGTCGATAGGAATATAG
GATGGTTCACTGCACATATGAACTGTGGCAATTGCCAATTTCCTCCAAAA
AATTGGATGGCAAAAGCTACGGTGATCAAGTTTAATGAAAAGTTGGTAAC
TACCACTAAACATAGGCTACTAGAACTGCAAGTACAGCTTAGTTGTTTAC
AGACTAGTCTTGGTTGAGCTCAACCTACACCAAACTTTCAAAAAACAATT
TTTTTCAAACCGGTAATGGAGACACCTTTTGTGCAATTAACTTGATCTCT
TTGATCCTTTTATCAACCAACTGCTTCAGCTGCTCTTCTTGACTCGGTTG
ATTTTCATCCATTTGGACACCACTAGTTTCAACATTCTGTGACTTGAACA
TGACAAAAGACATCTCCGGATCATAAGAGCTAGGTACATCCATTATGCGC
TTGTCAGTACTGCCTGAATCTTTTCCTAAAATATCTTCCCTCACACGATT
TGAAATGATTGTGGTATAATCCTCCATGTACTTGTCAACAGGATCAAGGC
GAAGATATATTAAAATCTCCCAACATTGGAGAAACTGTTTCTTGTTGATT
TTCAACACTTTCCTGACTTCCTCTACAGTACTGGCAGGTGGCACAAATCG
AGGGGCAAGGATTTTTTTTGATAGTTTCCCTTGCTTCAGATGCGAAACAG
CTGAGTTAATTGCATGCTGGATTGGCTCAAAAGCAAGCAGGTGTTGTATG
TCGACACAAGTGCGAACGTGTTGGAAGGAATCTAATGGCTCTT
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