CX052768

Overview
NameCX052768
Unique NameCX052768
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX052768 vs. ExPASy Swiss-Prot
Match: UBAX1_ARATH (UBA and UBX domain-containing protein At4g15410 OS=Arabidopsis thaliana GN=At4g15410 PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.629e-52
Identity = 118/231 (51.08%), Postives = 143/231 (61.90%), Query Frame = 3
Query:   78 ASRDKKPAKPSSSR-------AGGIRTLSDLNRRSGPXXXXXXXAPQEYYTGGEKSGMLVQDPSKGDPNDVDAIFNQAKELGAVEGPLEHLXXXXXXXXFTGTARLLSGETVPSAPQQ-----PEPIVHNIVFWANGFTVNDGPLRRLDDPENASFLESIKKSECPKELEPADKRSSVHVNLIRRDVKCPEPEKHHVPFQGVGRTLGSS-STAASEPTVDSTPVNTASSSS 731
            A  +K+   PS  R       AG IRT +DLNR              EYYTGG+KSGM+VQDP K    DVD +F+QA++  AV+ P+E          FTG ARLLSGE V S+PQQ     P+ I+H I FW NGFTVNDGPLR   DPENA+F+ SI +SECP ELEPADK+  VHV+L+RR     EP K   PFQGVGRTLG+S S ++S P   S P+N A + S
Sbjct:  111 AGENKETENPSGIRSSRSRQHAGNIRTFADLNRSPADGEGSDSDEANEYYTGGQKSGMMVQDPKK--VKDVDELFDQARQ-SAVDRPVE--PSRSASTSFTGAARLLSGEAVSSSPQQQQQEQPQRIMHTITFWLNGFTVNDGPLRGFSDPENAAFMNSISRSECPSELEPADKKIPVHVDLVRRGENFTEPPKPKNPFQGVGRTLGASGSGSSSAPQASSAPMNVAPAPS 336          
BLAST of CX052768 vs. ExPASy Swiss-Prot
Match: NSF1C_DICDI (NSFL1 cofactor p47 homolog OS=Dictyostelium discoideum GN=nsfl1c PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.313e-21
Identity = 77/247 (31.17%), Postives = 118/247 (47.77%), Query Frame = 3
Query:   54 SRKNFQSMASRDKKPAKPSSSRAGGIRTLSDLNRRS------GPXXXXXXXAPQEYYTGGEKSGMLVQDPSK-----GDPNDVDAIFNQAKELGAV---EGPLEHLXXXXXXXXFTGTARLLSGETVPSAPQQPEP----IVHNIVFWANGFTVNDGPLRRLDDPENASFLESIKKSECPKELE-PADKRSSVHVNLI-RRDVKCPEPEK-HHVPFQGVGRTLGSSSTAASEPTVDSTPVNTASSSS 731
            SR  +    ++      P+  R GGIRTLSD N                    Q+Y+TGGEKSG++V+   K     G  + V+ +F+ AK  GAV   E  +E            G      G    S P++ +P    +   + FW  GFT++DGPLR+ D+PEN   L+ I++   P+EL+  A   + + V LI   +    EP K  +V F G G+TLGSSST+ +    ++   N  ++++
Sbjct:   76 SRPVYSKPVAKTVSKKAPAGGRVGGIRTLSDFNNDDHDDHDHSDGDDDEDDRSQQYFTGGEKSGLVVESAPKKGKNGGSGDIVNDVFDSAKRHGAVASNEKKVEKPDSFDSVGYQLGATD--QGNRNVSKPKEKDPNSQVVEVKVTFWNQGFTIDDGPLRKYDNPENKELLDDIQRGIVPRELQKKATTPNGLSVTLINNHNQDYVEPAKPKYVAFSGGGQTLGSSSTSTNNNNNNNNNNNNRATTT 320          
BLAST of CX052768 vs. ExPASy Swiss-Prot
Match: UBX1_EMENI (UBX domain-containing protein 1 OS=Emericella nidulans GN=ubx1 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.147e-20
Identity = 73/233 (31.33%), Postives = 99/233 (42.49%), Query Frame = 3
Query:   72 SMASRDKKPAKPSSSRAGGIR---TLSDLNRRSGPXXXXXXXAPQEYYTGGEKSGMLVQDPSKGDPNDVDAIFNQAKELGAVEGPLEHLXXXXXXXXFTGTARLLSGETVPSA----------PQQPEPIVHNIVFWANGFTVNDGPLRRLDDPENASFLESIKKSECPKELEPADKRSSVHVNLIRRDVKCPEPEKHHVPFQGVGRTLGSSSTAASEPTVDSTPVNTASSSS 731
            S  S    P + SSSR    +   TL DL   +           Q+++ GGEKSG+ VQ+P       ++              P  +         FTG AR L GE  PS           PQ P  +   + FWA+GF+V+DG L R DDP+NA  L SI++   P  +  A     V V + + D K   P+  + PF G G+ LGS +     P   S P     SSS
Sbjct:   60 SAKSSSSTPRESSSSRKQPPKKFATLGDLASGAADSSDDDDDENQDFFAGGEKSGLAVQNPDDLKKKIIEKARRTQLPASDDSEPRRNY--------FTGPARTLGGEDTPSRVIDTPSGPAQPQIPRRVRRTLHFWADGFSVDDGELYRSDDPQNAEILNSIRQGRAPLSIMNAQHGQDVDVEIKQHDEKYVRPKPKYQPFAGKGQRLGSPTPGIRAP-APSEPAPAPQSSS 283          
BLAST of CX052768 vs. ExPASy Swiss-Prot
Match: UBX1_YEAST (UBX domain-containing protein 1 OS=Saccharomyces cerevisiae GN=SHP1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.547e-15
Identity = 68/232 (29.31%), Postives = 98/232 (42.24%), Query Frame = 3
Query:   54 SRKNFQSMASRDKKPAKPSSSRAGG----IRTLSDLNRRSGPXXXXXXXAPQEYYTGGEKSGMLVQDPSKGDPNDV-DAIFNQAK---ELGAVEGPLEHLXXXXXXXXFTGTARLLSGETVPSAPQ-----------QPEPIVHNIVFWANGFTVNDGPLRRLDDPENASFLESIKKSECPKELEPADKRSSVHVNLIRR-DVKCPEPEKHHVPFQGVGRTLGSSSTAASEP 689
            S +  +   S   +P K SS    G      + SD+ R  G         P+  + GGE SG+ V DPS  DPN +   +  +A+   ++GA  G  +          FTG    L G T+ +A +           +PE +   I FW  GF V DGPL R DDP N+ +L  + +   P +L        V VN+ ++ D     P +    F G G+ LGS     S P
Sbjct:   97 SNEYLKRKGSTSPEPTKGSSRSGSGNNSRFMSFSDMVR--GQADDDDEDQPRNTFAGGETSGLEVTDPS--DPNSLLKDLLEKARRGGQMGAENGFRDDEDHEMGANRFTGRGFRL-GSTIDAADEVVEDNTSQSQRRPEKVTREITFWKEGFQVADGPLYRYDDPANSFYLSELNQGRAPLKLLDVQFGQEVEVNVYKKLDESYKAPTRKLGGFSGQGQRLGSPIPGESSP 323          
BLAST of CX052768 vs. ExPASy Swiss-Prot
Match: NSF1C_PONAB (NSFL1 cofactor p47 OS=Pongo abelii GN=NSFL1C PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.794e-12
Identity = 64/195 (32.82%), Postives = 90/195 (46.15%), Query Frame = 3
Query:  195 QEYYTGG-EKSGM-LVQDPSKGDPND-VDAIFNQAKELGAV--EGPLEHLXXXXXXXXFTGTARLL-------SGETVPSAPQQPEPIVHNIV-FWANGFTVNDGPLRRLDDPENASFLESIKKSECPKELEPADKRSSVHVNL-IRRDVKCPEPEKHHVPFQGVGRTLGSSS---TAASEPTVDSTPVNTASSS 728
            Q +Y GG E+SG  +V  P K  PN+ VD +F  AKE GAV  E   +          F G    L       S        Q     VH ++  W +GF++++G LR   DP NA FLESI++ E P EL        V++++   RD    +P+     F G G+ LGS++    + S P   +     ASSS
Sbjct:   92 QRFYAGGSERSGQQIVGPPRKKSPNELVDDLFKGAKEHGAVAVERVTKSPGETSKPRPFAGGGYRLGAAPEEESAYVAGEKRQHSSQDVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKASSS 286          
BLAST of CX052768 vs. ExPASy Swiss-Prot
Match: NSF1C_HUMAN (NSFL1 cofactor p47 OS=Homo sapiens GN=NSFL1C PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.794e-12
Identity = 64/195 (32.82%), Postives = 90/195 (46.15%), Query Frame = 3
Query:  195 QEYYTGG-EKSGM-LVQDPSKGDPND-VDAIFNQAKELGAV--EGPLEHLXXXXXXXXFTGTARLL-------SGETVPSAPQQPEPIVHNIV-FWANGFTVNDGPLRRLDDPENASFLESIKKSECPKELEPADKRSSVHVNL-IRRDVKCPEPEKHHVPFQGVGRTLGSSS---TAASEPTVDSTPVNTASSS 728
            Q +Y GG E+SG  +V  P K  PN+ VD +F  AKE GAV  E   +          F G    L       S        Q     VH ++  W +GF++++G LR   DP NA FLESI++ E P EL        V++++   RD    +P+     F G G+ LGS++    + S P   +     ASSS
Sbjct:   92 QRFYAGGSERSGQQIVGPPRKKSPNELVDDLFKGAKEHGAVAVERVTKSPGETSKPRPFAGGGYRLGAAPEEESAYVAGEKRQHSSQDVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKASSS 286          
BLAST of CX052768 vs. ExPASy Swiss-Prot
Match: NSF1C_RAT (NSFL1 cofactor p47 OS=Rattus norvegicus GN=Nsfl1c PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 63/200 (31.50%), Postives = 90/200 (45.00%), Query Frame = 3
Query:  195 QEYYTGG-EKSGM-LVQDPSKGDPND-VDAIFNQAKELGAV--EGPLEHLXXXXXXXXFTGTARLLSGETVPSAPQQPEPIVHN-------------IVFWANGFTVNDGPLRRLDDPENASFLESIKKSECPKELEPADKRSSVHVNL-IRRDVKCPEPEKHHVPFQGVGRTLGSSSTA---ASEPTVDSTPVNTASSS 728
            Q +Y GG E+SG  +V  P K  PN+ VD +F  AKE GAV  E   +          F G      G  + +AP++    V               +  W  GF++++G LR   DP NA FLESI++ E P EL        V++++   RD    +P+     F G G+ LGS++      S P   +     ASSS
Sbjct:   92 QRFYAGGSERSGQQIVGPPRKKSPNELVDDLFKGAKEHGAVAVERVTKSPGETSKPRPFAG-----GGYRLGAAPEEESAYVAGERRRHSGQDVHVVLKLWKTGFSLDNGDLRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLNTSSPAQQAENEAKASSS 286          
BLAST of CX052768 vs. ExPASy Swiss-Prot
Match: NSF1C_MOUSE (NSFL1 cofactor p47 OS=Mus musculus GN=Nsfl1c PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 63/200 (31.50%), Postives = 90/200 (45.00%), Query Frame = 3
Query:  195 QEYYTGG-EKSGM-LVQDPSKGDPND-VDAIFNQAKELGAV--EGPLEHLXXXXXXXXFTGTARLLSGETVPSAPQQPEPIVHN-------------IVFWANGFTVNDGPLRRLDDPENASFLESIKKSECPKELEPADKRSSVHVNL-IRRDVKCPEPEKHHVPFQGVGRTLGSSSTA---ASEPTVDSTPVNTASSS 728
            Q +Y GG E+SG  +V  P K  PN+ VD +F  AKE GAV  E   +          F G      G  + +AP++    V               +  W  GF++++G LR   DP NA FLESI++ E P EL        V++++   RD    +P+     F G G+ LGS++      S P   +     ASSS
Sbjct:   92 QRFYAGGSERSGQQIVGPPRKKSPNELVDDLFKGAKEHGAVAVERVTKSPGETSKPRPFAG-----GGYRLGAAPEEESAYVAGERRRHSGQDVHVVLKLWKTGFSLDNGDLRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLNTSSPAQQAENEAKASSS 286          
BLAST of CX052768 vs. ExPASy Swiss-Prot
Match: NSF1C_BOVIN (NSFL1 cofactor p47 OS=Bos taurus GN=NSFL1C PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 63/200 (31.50%), Postives = 90/200 (45.00%), Query Frame = 3
Query:  195 QEYYTGG-EKSGM-LVQDPSKGDPND-VDAIFNQAKELGAV--EGPLEHLXXXXXXXXFTGTARLLSGETVPSAPQQPEPIVHN-------------IVFWANGFTVNDGPLRRLDDPENASFLESIKKSECPKELEPADKRSSVHVNL-IRRDVKCPEPEKHHVPFQGVGRTLGSSSTA---ASEPTVDSTPVNTASSS 728
            Q +Y GG E+SG  +V  P K  PN+ VD +F  AKE GAV  E   +          F G      G  + +AP++    V               +  W  GF++++G LR   DP NA FLESI++ E P EL        V++++   RD    +P+     F G G+ LGS++      S P   +     ASSS
Sbjct:   92 QRFYAGGSERSGQQIVGPPRKRSPNELVDDLFKGAKEHGAVAVERVTKSPGETSKPRPFAG-----GGYRLGAAPEEESAYVAGERRRHSGQDVHVVLKLWKTGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQILNTSSPAQQAENEAKASSS 286          
BLAST of CX052768 vs. ExPASy Swiss-Prot
Match: UBX2B_HUMAN (UBX domain-containing protein 2B OS=Homo sapiens GN=UBXN2B PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.301e-11
Identity = 57/197 (28.93%), Postives = 88/197 (44.67%), Query Frame = 3
Query:  141 SDLNRRSGPXXXXXXXAPQEYYTGG-EKSGMLVQDPSKGDPNDVDAIFNQAKELGAVE-GPLEHLXXXXXXXXFTGTARLLSGETVPSAP-----QQPEPIVHNIVFWANGFTVNDGPLRRLDDPENASFLESIKKSECPKELEPADKRSSVHVNL-IRRDVKCPEPEKHHVPFQGVGRTLGSSSTAASEPTVDSTP 707
            S  NR            PQ +Y+   E SG+ +  PS G    V+ +F +A+E GAV                FTG    L       +       Q + +   +  W+NGF+++DG LR  ++P NA FLES+K+ E P EL+       V++++   +D +  +P      F G G+ LGS +     P + STP
Sbjct:   44 SKSNRPKATVFKSPRTPPQRFYSSEHEYSGLNIVRPSTG--KIVNELFKEAREHGAVPLNEATRASGDDKSKSFTGGGYRLGSSFCKRSEYIYGENQLQDVQILLKLWSNGFSLDDGELRPYNEPTNAQFLESVKRGEIPLELQRLVHGGQVNLDMEDHQDQEYIKPRLRFKAFSGEGQKLGSLT-----PEIVSTP 233          
The following BLAST results are available for this feature:
BLAST of CX052768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
UBAX1_ARATH1.629e-5251.08UBA and UBX domain-containing protein At4g15410 OS... [more]
NSF1C_DICDI3.313e-2131.17NSFL1 cofactor p47 homolog OS=Dictyostelium discoi... [more]
UBX1_EMENI2.147e-2031.33UBX domain-containing protein 1 OS=Emericella nidu... [more]
UBX1_YEAST3.547e-1529.31UBX domain-containing protein 1 OS=Saccharomyces c... [more]
NSF1C_PONAB4.794e-1232.82NSFL1 cofactor p47 OS=Pongo abelii GN=NSFL1C PE=2 ... [more]
NSF1C_HUMAN4.794e-1232.82NSFL1 cofactor p47 OS=Homo sapiens GN=NSFL1C PE=1 ... [more]
NSF1C_RAT1.395e-1131.50NSFL1 cofactor p47 OS=Rattus norvegicus GN=Nsfl1c ... [more]
NSF1C_MOUSE1.395e-1131.50NSFL1 cofactor p47 OS=Mus musculus GN=Nsfl1c PE=1 ... [more]
NSF1C_BOVIN1.395e-1131.50NSFL1 cofactor p47 OS=Bos taurus GN=NSFL1C PE=2 SV... [more]
UBX2B_HUMAN5.301e-1128.93UBX domain-containing protein 2B OS=Homo sapiens G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_47H08_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-47H08-P16-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX052768 ID=CX052768; Name=CX052768; organism=Citrus sinensis; type=EST; length=732bp
AGATTCCCGCATAAAAAACTCAACTGATTATCATCTCTCCTTTTCGAGTT
TGAAGCAGAAAAAACTTCCAATCCATGGCGTCACGTGACAAAAAACCAGC
AAAACCATCAAGCAGTCGGGCCGGCGGCATACGCACGCTCTCCGATCTGA
ACCGGCGGTCGGGACCCGACTCCGACTCAGACGATGATGCACCTCAAGAG
TATTACACTGGTGGCGAGAAGAGTGGTATGCTTGTCCAAGATCCTTCCAA
GGGCGATCCTAATGATGTGGATGCGATTTTCAATCAGGCTAAGGAACTGG
GAGCTGTAGAAGGGCCGCTTGAGCATCTCAGTCCATCTTCAAGCTCAAGA
AGCTTTACTGGAACTGCTAGATTACTCTCGGGGGAAACTGTACCGTCTGC
ACCTCAGCAGCCTGAGCCCATTGTTCATAACATTGTTTTCTGGGCCAATG
GTTTCACTGTTAATGATGGTCCCTTGAGGAGGTTGGATGATCCTGAAAAT
GCATCTTTCTTAGAGAGCATCAAAAAGTCTGAGTGTCCAAAAGAGCTAGA
GCCTGCTGATAAAAGGTCCTCAGTTCATGTCAATCTGATAAGGAGGGATG
TGAAATGCCCTGAACCAGAGAAGCACCATGTTCCATTTCAGGGTGTTGGA
AGAACACTGGGTAGCAGCAGTACTGCAGCTTCTGAACCAACTGTTGATTC
CACCCCGGTCAACACTGCTTCCTCCTCTTCTG
back to top