DN621543

Overview
NameDN621543
Unique NameDN621543
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621543 vs. ExPASy Swiss-Prot
Match: VATF_ARATH (V-type proton ATPase subunit F OS=Arabidopsis thaliana GN=VHA-F PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.997e-47
Identity = 101/151 (66.89%), Postives = 114/151 (75.50%), Query Frame = -1
Query:  213 MANRPQIRTAASALIAMIADEYASSVSRTMQQPYMFDHLLMQVHCWDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESVA 665
            MA R  I    SALIAMIADE                         DTVVGFL+AGVGNVD+RRKTNYLIVDSKTT++QIEDAFKEF++R+DIAI+L+SQY+AN IRFLVDS+NKP+PAILEIPSKDHPYDPA DSVLSRVK L S ESV+
Sbjct:    1 MAGRATIPARNSALIAMIADE-------------------------DTVVGFLMAGVGNVDIRRKTNYLIVDSKTTVRQIEDAFKEFSARDDIAIILLSQYIANMIRFLVDSYNKPVPAILEIPSKDHPYDPAHDSVLSRVKYLFSAESVS 126          
BLAST of DN621543 vs. ExPASy Swiss-Prot
Match: VATF_CAEEL (Probable V-type proton ATPase subunit F OS=Caenorhabditis elegans GN=vha-9 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.877e-29
Identity = 59/102 (57.84%), Postives = 83/102 (81.37%), Query Frame = -1
Query:  222 DTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVE 527
            DTVVGFLL GVG ++  RK NYLIVD +TT+++IE+AF  F +R+DIAI+LI+Q++A  IR+ VD+H + IPA+LEIPSK+ PYDP++DS+L+R + L + E
Sbjct:   17 DTVVGFLLGGVGELNKARKPNYLIVDKQTTVQEIEEAFNGFCARDDIAIILINQHIAEMIRYAVDNHTQSIPAVLEIPSKEAPYDPSKDSILNRARGLFNPE 118          
BLAST of DN621543 vs. ExPASy Swiss-Prot
Match: VATF_DICDI (V-type proton ATPase subunit F OS=Dictyostelium discoideum GN=vatF PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.624e-28
Identity = 58/98 (59.18%), Postives = 78/98 (79.59%), Query Frame = -1
Query:  234 DTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNL 527
            D V GFLLAGVG  D ++  N+L+VDSKT+  +IE AFK FT+R DIAI++I+Q VA+ IR+L+D +++ IP ILEIPSKDHPYDP +DSV+ +VK +
Sbjct:   19 DVVTGFLLAGVGQKDKKKNENFLVVDSKTSQAKIETAFKSFTTRNDIAIIMITQKVADEIRYLIDEYHQVIPTILEIPSKDHPYDPKKDSVMLKVKKM 116          
BLAST of DN621543 vs. ExPASy Swiss-Prot
Match: VATF_RAT (V-type proton ATPase subunit F OS=Rattus norvegicus GN=Atp6v1f PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.888e-28
Identity = 53/104 (50.96%), Postives = 78/104 (75.00%), Query Frame = -1
Query:  216 DTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESV 527
            DTV GFLL G+G ++  R  N+L+V+  TTI +IED F++F +R+DI I+LI+QY+A  +R  +D+H + IPA+LEIPSK+HPYD A+DS+L R K + + E +
Sbjct:   15 DTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDDIGIILINQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRAKGMFTAEDL 118          
BLAST of DN621543 vs. ExPASy Swiss-Prot
Match: VATF_MOUSE (V-type proton ATPase subunit F OS=Mus musculus GN=Atp6v1f PE=1 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 7.888e-28
Identity = 53/104 (50.96%), Postives = 78/104 (75.00%), Query Frame = -1
Query:  216 DTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESV 527
            DTV GFLL G+G ++  R  N+L+V+  TTI +IED F++F +R+DI I+LI+QY+A  +R  +D+H + IPA+LEIPSK+HPYD A+DS+L R K + + E +
Sbjct:   15 DTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDDIGIILINQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRAKGMFTAEDL 118          
BLAST of DN621543 vs. ExPASy Swiss-Prot
Match: VATF_BOVIN (V-type proton ATPase subunit F OS=Bos taurus GN=ATP6V1F PE=3 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.757e-27
Identity = 52/104 (50.00%), Postives = 78/104 (75.00%), Query Frame = -1
Query:  216 DTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESV 527
            DTV GFLL G+G ++  R  N+L+V+  TTI +IED F++F +R+DI I+LI+QY+A  +R  +D+H + IPA+LEIPSK+HPYD A+DS+L R + + + E +
Sbjct:   15 DTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDDIGIILINQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRARGMFTAEDL 118          
BLAST of DN621543 vs. ExPASy Swiss-Prot
Match: VATF_HUMAN (V-type proton ATPase subunit F OS=Homo sapiens GN=ATP6V1F PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.295e-27
Identity = 52/104 (50.00%), Postives = 78/104 (75.00%), Query Frame = -1
Query:  216 DTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESV 527
            DTV GFLL G+G ++  R  N+L+V+  TTI +IED F++F +R+DI I+LI+QY+A  +R  +D+H + IPA+LEIPSK+HPYD A+DS+L R + + + E +
Sbjct:   15 DTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDDIGIILINQYIAEMVRHALDAHQQSIPAVLEIPSKEHPYDAAKDSILRRARGMFTAEDL 118          
BLAST of DN621543 vs. ExPASy Swiss-Prot
Match: VATF_ANOGA (V-type proton ATPase subunit F OS=Anopheles gambiae GN=Vha14 PE=2 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.295e-27
Identity = 55/108 (50.93%), Postives = 76/108 (70.37%), Query Frame = -1
Query:  204 DTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESVASDR 527
            DT VGFLL GVG ++  R  N+++VD  T + +IED FK F  R+DI I+LI+Q  A  IR ++DSH  P PA+LEIPSKDHPYD ++DS+L R K + + E + ++R
Sbjct:   19 DTCVGFLLGGVGEINKNRHPNFMVVDKNTAVSEIEDCFKRFIKRDDIDIILINQNYAELIRHVIDSHTAPTPAVLEIPSKDHPYDASKDSILRRAKGMFNPEDMIANR 126          
BLAST of DN621543 vs. ExPASy Swiss-Prot
Match: VATF_XENLA (V-type proton ATPase subunit F (Fragment) OS=Xenopus laevis GN=atp6s14 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.488e-26
Identity = 50/104 (48.08%), Postives = 79/104 (75.96%), Query Frame = -1
Query:  216 DTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESV 527
            DTV GFLL G+G ++  RK N+L+V+ +T++ +IE+ F+ F +R+DI I+LI+Q++A  IR ++D+H   IPA+LEIPSK+HPYD  +DS+L R K + ++E +
Sbjct:    6 DTVTGFLLGGIGELNKNRKPNFLVVEKETSVTEIEETFRSFLNRDDIGIILINQFIAEMIRHVIDTHTISIPAVLEIPSKEHPYDATKDSILRRAKGMFTMEDL 109          
BLAST of DN621543 vs. ExPASy Swiss-Prot
Match: VATF_MANSE (V-type proton ATPase subunit F OS=Manduca sexta GN=VHA14 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.537e-26
Identity = 50/104 (48.08%), Postives = 75/104 (72.12%), Query Frame = -1
Query:  216 DTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESV 527
            DT VGFLL G+G ++  R  N+++VD  T + +IE+ FK F  R+DI I+LI+Q VA  +R ++D+H  P+P++LEIPSKDHPYD ++DS+L R K + + E +
Sbjct:   19 DTCVGFLLGGIGEINKNRHPNFMVVDKNTPVSEIEECFKRFVKRDDIDIILINQNVAELVRHVIDAHTAPVPSVLEIPSKDHPYDASKDSILRRAKGMFNPEDL 122          
The following BLAST results are available for this feature:
BLAST of DN621543 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
VATF_ARATH1.997e-4766.89V-type proton ATPase subunit F OS=Arabidopsis thal... [more]
VATF_CAEEL1.877e-2957.84Probable V-type proton ATPase subunit F OS=Caenorh... [more]
VATF_DICDI4.624e-2859.18V-type proton ATPase subunit F OS=Dictyostelium di... [more]
VATF_RAT7.888e-2850.96V-type proton ATPase subunit F OS=Rattus norvegicu... [more]
VATF_MOUSE7.888e-2850.96V-type proton ATPase subunit F OS=Mus musculus GN=... [more]
VATF_BOVIN1.757e-2750.00V-type proton ATPase subunit F OS=Bos taurus GN=AT... [more]
VATF_HUMAN2.295e-2750.00V-type proton ATPase subunit F OS=Homo sapiens GN=... [more]
VATF_ANOGA2.295e-2750.93V-type proton ATPase subunit F OS=Anopheles gambia... [more]
VATF_XENLA1.488e-2648.08V-type proton ATPase subunit F (Fragment) OS=Xenop... [more]
VATF_MANSE2.537e-2648.08V-type proton ATPase subunit F OS=Manduca sexta GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06N18_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006N18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621543 ID=DN621543; Name=DN621543; organism=Citrus sinensis; type=EST; length=719bp
CACCGGTGTATTATGCACACAAATACATACATATAAAACACAACTTGTAT
CCAAACTAATATTTCTTCACCAGAGTTCATGAATAGTTGGTAGAAAAATT
ACCCAAGTACAAATATAGGAAGAATCATATATGTAACTATATAAATATGC
AGTCGAGGGAAAGGAGATTAAACAGAGACACCACTGTATATCTAAGCTCA
GCGCCTGTCAGATGCCACAGATTCTACAGAGACGAGGTTCTTCACTCGTG
AAAGAACTGAATCTTGTGCAGGATCATACGGATGATCCTTGGAAGGTATC
TCCAAAATTGCAGGGATCGGCTTGTTATGGCTATCAACCAAAAACCTTAT
CCTGTTTGCAACATATTGGCTAATTAGAACTATTGCGATATCCTCCCTGG
ATGTGAACTCTTTAAATGCATCTTCAATTTGCTTTATAGTTGTTTTTGAG
TCCACAATAAGGTAATTTGTCTTCCTCCGCAAGTCAACATTCCCAACTCC
AGCAAGCAAAAATCCAACTACAGTGTCCCAACAGTGGACTTGCATCAGGA
GATGATCAAACATGTATGGCTGTTGCATGGTCCTTGAAACACTCGAAGCA
TACTCATCTGCGATCATAGCGATGAGCGCCGAGGCAGCGGTACGTATTTG
AGGTCTATTAGCCATGCTGCATAAATTAAATTCTTGCGTCTTTTGTTCGA
TCTCAACTCCTCCCTCGTG
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