DN621539
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN621539 vs. ExPASy Swiss-Prot
Match: RPF1_XENLA (Ribosome production factor 1 OS=Xenopus laevis GN=bxdc5 PE=2 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 4.628e-20 Identity = 49/94 (52.13%), Postives = 60/94 (63.83%), Query Frame = -3 Query: 291 TFHNQRDFIFFRHHRYILETKESKGSDANGKKAKDAKSEKTSQQKVITRLQERGPRFTLKLVSLQHGTFDTKGGEFEWVHK-PEMDTSRRRFFL 569 TFHNQRD+IFFR+HRY+ ++++ G +QE GPRFTLKL SLQ GTFD+K GE+EWVHK EMDTSRR+F L Sbjct: 274 TFHNQRDYIFFRYHRYLFKSEKKVG------------------------IQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKRHEMDTSRRKFHL 343 HSP 2 Score: 26.1794 bits (56), Expect = 4.628e-20 Identity = 10/21 (47.62%), Postives = 14/21 (66.67%), Query Frame = -2 Query: 565 RLIQSLFPQSPEFRGRRVSDF 627 R+ SL+P P F GR+V+ F Sbjct: 255 RMFASLYPHDPHFVGRQVATF 275
BLAST of DN621539 vs. ExPASy Swiss-Prot
Match: YUY1_CAEEL (Brix domain-containing protein F44G4.1 OS=Caenorhabditis elegans GN=F44G4.1 PE=2 SV=4) HSP 1 Score: 88.9669 bits (219), Expect = 1.718e-19 Identity = 51/95 (53.68%), Postives = 57/95 (60.00%), Query Frame = -3 Query: 291 VTFHNQRDFIFFRHHRYILETKESKGSDANGKKAKDAKSEKTSQQKVITRLQERGPRFTLKLVSLQHGTFDTKGGEFEWVHK-PEMDTSRRRFFL 572 VTFHNQRD+IFFRHHRY + + SK + L E GPRFTL+L LQ GTFD K GEFEWV K EM+TSRRRFFL Sbjct: 313 VTFHNQRDYIFFRHHRYEFKKEGSKAA-----------------------LLELGPRFTLRLKWLQKGTFDAKWGEFEWVLKRHEMETSRRRFFL 384 HSP 2 Score: 27.7202 bits (60), Expect = 1.718e-19 Identity = 11/21 (52.38%), Postives = 14/21 (66.67%), Query Frame = -2 Query: 565 RLIQSLFPQSPEFRGRRVSDF 627 R++ LFP P+F GRRV F Sbjct: 295 RMLACLFPHDPKFTGRRVVTF 315
BLAST of DN621539 vs. ExPASy Swiss-Prot
Match: RPF1_MOUSE (Ribosome production factor 1 OS=Mus musculus GN=Bxdc5 PE=2 SV=2) HSP 1 Score: 95.5153 bits (236), Expect = 2.327e-19 Identity = 51/94 (54.26%), Postives = 60/94 (63.83%), Query Frame = -3 Query: 291 TFHNQRDFIFFRHHRYILETKESKGSDANGKKAKDAKSEKTSQQKVITRLQERGPRFTLKLVSLQHGTFDTKGGEFEWVHKP-EMDTSRRRFFL 569 TFHNQRD+IFFR HRYI ++++ G +QE GPRFTLKL SLQ GTFD+K GE+EWVHKP EMDTSRR+F L Sbjct: 280 TFHNQRDYIFFRFHRYIFKSEKKVG------------------------IQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKPREMDTSRRKFHL 349
BLAST of DN621539 vs. ExPASy Swiss-Prot
Match: RPF1_PONAB (Ribosome production factor 1 OS=Pongo abelii GN=BXDC5 PE=2 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.039e-19 Identity = 51/94 (54.26%), Postives = 59/94 (62.77%), Query Frame = -3 Query: 291 TFHNQRDFIFFRHHRYILETKESKGSDANGKKAKDAKSEKTSQQKVITRLQERGPRFTLKLVSLQHGTFDTKGGEFEWVHKP-EMDTSRRRFFL 569 TFHNQRD+IFFR HRYI +++ G +QE GPRFTLKL SLQ GTFD+K GE+EWVHKP EMDTSRR+F L Sbjct: 280 TFHNQRDYIFFRFHRYIFRSEKKVG------------------------IQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKPREMDTSRRKFHL 349
BLAST of DN621539 vs. ExPASy Swiss-Prot
Match: RPF1_HUMAN (Ribosome production factor 1 OS=Homo sapiens GN=BXDC5 PE=1 SV=2) HSP 1 Score: 95.1301 bits (235), Expect = 3.039e-19 Identity = 51/94 (54.26%), Postives = 59/94 (62.77%), Query Frame = -3 Query: 291 TFHNQRDFIFFRHHRYILETKESKGSDANGKKAKDAKSEKTSQQKVITRLQERGPRFTLKLVSLQHGTFDTKGGEFEWVHKP-EMDTSRRRFFL 569 TFHNQRD+IFFR HRYI +++ G +QE GPRFTLKL SLQ GTFD+K GE+EWVHKP EMDTSRR+F L Sbjct: 280 TFHNQRDYIFFRFHRYIFRSEKKVG------------------------IQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKPREMDTSRRKFHL 349
BLAST of DN621539 vs. ExPASy Swiss-Prot
Match: RPF1_DANRE (Ribosome production factor 1 OS=Danio rerio GN=bxdc5 PE=2 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 4.388e-18 Identity = 50/94 (53.19%), Postives = 58/94 (61.70%), Query Frame = -3 Query: 291 TFHNQRDFIFFRHHRYILETKESKGSDANGKKAKDAKSEKTSQQKVITRLQERGPRFTLKLVSLQHGTFDTKGGEFEWVHK-PEMDTSRRRFFL 569 TFHNQRDFIFFR HRYI + ++ G +QE GPRFTLKL SLQ GTFD+K GE+EWVHK EMD+SRR+F L Sbjct: 261 TFHNQRDFIFFRFHRYIFKNEKKVG------------------------IQELGPRFTLKLRSLQKGTFDSKFGEYEWVHKRHEMDSSRRKFHL 330
BLAST of DN621539 vs. ExPASy Swiss-Prot
Match: RPF1_DROME (Probable ribosome production factor 1 OS=Drosophila melanogaster GN=CG6712 PE=2 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.939e-17 Identity = 50/96 (52.08%), Postives = 58/96 (60.42%), Query Frame = -3 Query: 291 VTFHNQRDFIFFRHHRYILETKESKGSDANGKKAKDAKSEKTSQQKVITRLQERGPRFTLKLVSLQHGTFDTKGGEFEWV--HKPEMDTSRRRFFL 572 VTFHNQRD+IFFRHHRY TKE GK+ K L+E GPRFTLKL SLQ GTFD+K G++ W+ +K SRRRFFL Sbjct: 322 VTFHNQRDYIFFRHHRYEF-TKE-------GKRVK---------------LRELGPRFTLKLRSLQEGTFDSKTGDYAWIISNKRHAMESRRRFFL 394 HSP 2 Score: 26.9498 bits (58), Expect = 1.939e-17 Identity = 11/21 (52.38%), Postives = 14/21 (66.67%), Query Frame = -2 Query: 565 RLIQSLFPQSPEFRGRRVSDF 627 R++ +LF PEFRGRR F Sbjct: 304 RMLGALFHHDPEFRGRRAVTF 324
BLAST of DN621539 vs. ExPASy Swiss-Prot
Match: RPF1_RAT (Ribosome production factor 1 OS=Rattus norvegicus GN=Bxdc5 PE=2 SV=2) HSP 1 Score: 79.7221 bits (195), Expect = 1.321e-14 Identity = 41/81 (50.62%), Postives = 49/81 (60.49%), Query Frame = -3 Query: 327 TFHNQRDFIFFRHHRYILETKESKGSDANGKKAKDAKSEKTSQQKVITRLQERGPRFTLKLVSLQHGTFDTKGGEFEWVHK 569 TFHNQRD+IFFR HRYI ++++ G +QE GPRFTLKL SLQ GTFD+K GE+EWVHK Sbjct: 280 TFHNQRDYIFFRFHRYIFKSEKKVG------------------------IQELGPRFTLKLRSLQKGTFDSKYGEYEWVHK 336
BLAST of DN621539 vs. ExPASy Swiss-Prot
Match: RPF1_YEAST (Ribosome production factor 1 OS=Saccharomyces cerevisiae GN=RPF1 PE=1 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 3.911e-14 Identity = 39/94 (41.49%), Postives = 49/94 (52.13%), Query Frame = -3 Query: 291 VTFHNQRDFIFFRHHRYILETKESKGSDANGKKAKDAKSEKTSQQKVITRLQERGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 572 +T HNQRD+IFFR HRY+ + E G LQE GP+FTLKL LQ G + E EW HKPEMD +++F+L Sbjct: 230 ITLHNQRDYIFFRRHRYVFKDNERVG------------------------LQELGPQFTLKLKRLQRGIKE----ETEWEHKPEMDKEKKKFYL 295 HSP 2 Score: 26.9498 bits (58), Expect = 3.911e-14 Identity = 10/18 (55.56%), Postives = 14/18 (77.78%), Query Frame = -2 Query: 574 RLIQSLFPQSPEFRGRRV 627 RL QS+ PQ+P+ GR+V Sbjct: 212 RLFQSILPQNPDIEGRQV 229 The following BLAST results are available for this feature:
BLAST of DN621539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 9
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >DN621539 ID=DN621539; Name=DN621539; organism=Citrus sinensis; type=EST; length=628bpback to top |