DN621539

Overview
NameDN621539
Unique NameDN621539
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621539 vs. ExPASy Swiss-Prot
Match: RPF1_XENLA (Ribosome production factor 1 OS=Xenopus laevis GN=bxdc5 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.628e-20
Identity = 49/94 (52.13%), Postives = 60/94 (63.83%), Query Frame = -3
Query:  291 TFHNQRDFIFFRHHRYILETKESKGSDANGKKAKDAKSEKTSQQKVITRLQERGPRFTLKLVSLQHGTFDTKGGEFEWVHK-PEMDTSRRRFFL 569
            TFHNQRD+IFFR+HRY+ ++++  G                        +QE GPRFTLKL SLQ GTFD+K GE+EWVHK  EMDTSRR+F L
Sbjct:  274 TFHNQRDYIFFRYHRYLFKSEKKVG------------------------IQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKRHEMDTSRRKFHL 343          

HSP 2 Score: 26.1794 bits (56), Expect = 4.628e-20
Identity = 10/21 (47.62%), Postives = 14/21 (66.67%), Query Frame = -2
Query:  565 RLIQSLFPQSPEFRGRRVSDF 627
            R+  SL+P  P F GR+V+ F
Sbjct:  255 RMFASLYPHDPHFVGRQVATF 275          
BLAST of DN621539 vs. ExPASy Swiss-Prot
Match: YUY1_CAEEL (Brix domain-containing protein F44G4.1 OS=Caenorhabditis elegans GN=F44G4.1 PE=2 SV=4)

HSP 1 Score: 88.9669 bits (219), Expect = 1.718e-19
Identity = 51/95 (53.68%), Postives = 57/95 (60.00%), Query Frame = -3
Query:  291 VTFHNQRDFIFFRHHRYILETKESKGSDANGKKAKDAKSEKTSQQKVITRLQERGPRFTLKLVSLQHGTFDTKGGEFEWVHK-PEMDTSRRRFFL 572
            VTFHNQRD+IFFRHHRY  + + SK +                       L E GPRFTL+L  LQ GTFD K GEFEWV K  EM+TSRRRFFL
Sbjct:  313 VTFHNQRDYIFFRHHRYEFKKEGSKAA-----------------------LLELGPRFTLRLKWLQKGTFDAKWGEFEWVLKRHEMETSRRRFFL 384          

HSP 2 Score: 27.7202 bits (60), Expect = 1.718e-19
Identity = 11/21 (52.38%), Postives = 14/21 (66.67%), Query Frame = -2
Query:  565 RLIQSLFPQSPEFRGRRVSDF 627
            R++  LFP  P+F GRRV  F
Sbjct:  295 RMLACLFPHDPKFTGRRVVTF 315          
BLAST of DN621539 vs. ExPASy Swiss-Prot
Match: RPF1_MOUSE (Ribosome production factor 1 OS=Mus musculus GN=Bxdc5 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.327e-19
Identity = 51/94 (54.26%), Postives = 60/94 (63.83%), Query Frame = -3
Query:  291 TFHNQRDFIFFRHHRYILETKESKGSDANGKKAKDAKSEKTSQQKVITRLQERGPRFTLKLVSLQHGTFDTKGGEFEWVHKP-EMDTSRRRFFL 569
            TFHNQRD+IFFR HRYI ++++  G                        +QE GPRFTLKL SLQ GTFD+K GE+EWVHKP EMDTSRR+F L
Sbjct:  280 TFHNQRDYIFFRFHRYIFKSEKKVG------------------------IQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKPREMDTSRRKFHL 349          
BLAST of DN621539 vs. ExPASy Swiss-Prot
Match: RPF1_PONAB (Ribosome production factor 1 OS=Pongo abelii GN=BXDC5 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.039e-19
Identity = 51/94 (54.26%), Postives = 59/94 (62.77%), Query Frame = -3
Query:  291 TFHNQRDFIFFRHHRYILETKESKGSDANGKKAKDAKSEKTSQQKVITRLQERGPRFTLKLVSLQHGTFDTKGGEFEWVHKP-EMDTSRRRFFL 569
            TFHNQRD+IFFR HRYI  +++  G                        +QE GPRFTLKL SLQ GTFD+K GE+EWVHKP EMDTSRR+F L
Sbjct:  280 TFHNQRDYIFFRFHRYIFRSEKKVG------------------------IQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKPREMDTSRRKFHL 349          
BLAST of DN621539 vs. ExPASy Swiss-Prot
Match: RPF1_HUMAN (Ribosome production factor 1 OS=Homo sapiens GN=BXDC5 PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.039e-19
Identity = 51/94 (54.26%), Postives = 59/94 (62.77%), Query Frame = -3
Query:  291 TFHNQRDFIFFRHHRYILETKESKGSDANGKKAKDAKSEKTSQQKVITRLQERGPRFTLKLVSLQHGTFDTKGGEFEWVHKP-EMDTSRRRFFL 569
            TFHNQRD+IFFR HRYI  +++  G                        +QE GPRFTLKL SLQ GTFD+K GE+EWVHKP EMDTSRR+F L
Sbjct:  280 TFHNQRDYIFFRFHRYIFRSEKKVG------------------------IQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKPREMDTSRRKFHL 349          
BLAST of DN621539 vs. ExPASy Swiss-Prot
Match: RPF1_DANRE (Ribosome production factor 1 OS=Danio rerio GN=bxdc5 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.388e-18
Identity = 50/94 (53.19%), Postives = 58/94 (61.70%), Query Frame = -3
Query:  291 TFHNQRDFIFFRHHRYILETKESKGSDANGKKAKDAKSEKTSQQKVITRLQERGPRFTLKLVSLQHGTFDTKGGEFEWVHK-PEMDTSRRRFFL 569
            TFHNQRDFIFFR HRYI + ++  G                        +QE GPRFTLKL SLQ GTFD+K GE+EWVHK  EMD+SRR+F L
Sbjct:  261 TFHNQRDFIFFRFHRYIFKNEKKVG------------------------IQELGPRFTLKLRSLQKGTFDSKFGEYEWVHKRHEMDSSRRKFHL 330          
BLAST of DN621539 vs. ExPASy Swiss-Prot
Match: RPF1_DROME (Probable ribosome production factor 1 OS=Drosophila melanogaster GN=CG6712 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.939e-17
Identity = 50/96 (52.08%), Postives = 58/96 (60.42%), Query Frame = -3
Query:  291 VTFHNQRDFIFFRHHRYILETKESKGSDANGKKAKDAKSEKTSQQKVITRLQERGPRFTLKLVSLQHGTFDTKGGEFEWV--HKPEMDTSRRRFFL 572
            VTFHNQRD+IFFRHHRY   TKE       GK+ K               L+E GPRFTLKL SLQ GTFD+K G++ W+  +K     SRRRFFL
Sbjct:  322 VTFHNQRDYIFFRHHRYEF-TKE-------GKRVK---------------LRELGPRFTLKLRSLQEGTFDSKTGDYAWIISNKRHAMESRRRFFL 394          

HSP 2 Score: 26.9498 bits (58), Expect = 1.939e-17
Identity = 11/21 (52.38%), Postives = 14/21 (66.67%), Query Frame = -2
Query:  565 RLIQSLFPQSPEFRGRRVSDF 627
            R++ +LF   PEFRGRR   F
Sbjct:  304 RMLGALFHHDPEFRGRRAVTF 324          
BLAST of DN621539 vs. ExPASy Swiss-Prot
Match: RPF1_RAT (Ribosome production factor 1 OS=Rattus norvegicus GN=Bxdc5 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.321e-14
Identity = 41/81 (50.62%), Postives = 49/81 (60.49%), Query Frame = -3
Query:  327 TFHNQRDFIFFRHHRYILETKESKGSDANGKKAKDAKSEKTSQQKVITRLQERGPRFTLKLVSLQHGTFDTKGGEFEWVHK 569
            TFHNQRD+IFFR HRYI ++++  G                        +QE GPRFTLKL SLQ GTFD+K GE+EWVHK
Sbjct:  280 TFHNQRDYIFFRFHRYIFKSEKKVG------------------------IQELGPRFTLKLRSLQKGTFDSKYGEYEWVHK 336          
BLAST of DN621539 vs. ExPASy Swiss-Prot
Match: RPF1_YEAST (Ribosome production factor 1 OS=Saccharomyces cerevisiae GN=RPF1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.911e-14
Identity = 39/94 (41.49%), Postives = 49/94 (52.13%), Query Frame = -3
Query:  291 VTFHNQRDFIFFRHHRYILETKESKGSDANGKKAKDAKSEKTSQQKVITRLQERGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 572
            +T HNQRD+IFFR HRY+ +  E  G                        LQE GP+FTLKL  LQ G  +    E EW HKPEMD  +++F+L
Sbjct:  230 ITLHNQRDYIFFRRHRYVFKDNERVG------------------------LQELGPQFTLKLKRLQRGIKE----ETEWEHKPEMDKEKKKFYL 295          

HSP 2 Score: 26.9498 bits (58), Expect = 3.911e-14
Identity = 10/18 (55.56%), Postives = 14/18 (77.78%), Query Frame = -2
Query:  574 RLIQSLFPQSPEFRGRRV 627
            RL QS+ PQ+P+  GR+V
Sbjct:  212 RLFQSILPQNPDIEGRQV 229          
The following BLAST results are available for this feature:
BLAST of DN621539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
RPF1_XENLA4.628e-2052.13Ribosome production factor 1 OS=Xenopus laevis GN=... [more]
YUY1_CAEEL1.718e-1953.68Brix domain-containing protein F44G4.1 OS=Caenorha... [more]
RPF1_MOUSE2.327e-1954.26Ribosome production factor 1 OS=Mus musculus GN=Bx... [more]
RPF1_PONAB3.039e-1954.26Ribosome production factor 1 OS=Pongo abelii GN=BX... [more]
RPF1_HUMAN3.039e-1954.26Ribosome production factor 1 OS=Homo sapiens GN=BX... [more]
RPF1_DANRE4.388e-1853.19Ribosome production factor 1 OS=Danio rerio GN=bxd... [more]
RPF1_DROME1.939e-1752.08Probable ribosome production factor 1 OS=Drosophil... [more]
RPF1_RAT1.321e-1450.62Ribosome production factor 1 OS=Rattus norvegicus ... [more]
RPF1_YEAST3.911e-1441.49Ribosome production factor 1 OS=Saccharomyces cere... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_06N16_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006N16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621539 ID=DN621539; Name=DN621539; organism=Citrus sinensis; type=EST; length=628bp
AAGTTCTCCCTCGAGTCTTACTATAAAGCAAAATTTTATCATACAACAGA
AATGAAATACGATGGGGAATTTAGAAGATCAAAAAGCGAGCTACAATCAT
TTTCTACCCACAATTGGAAACGAATCATAATCAGCCAAAAATTATCAGAG
TTACTAAACCAAGTCCAGCACAATCAAGTGGCCACAATCGGTTGAAGTTT
CATCATCAGTTAAGGCAGGTAGGAGCACTCCACCAGAAAATGCTTAAATT
TTAAGCAATGAAACTCAGAGAGAGCAATCCAAAGAGGTCACAAGAAAAAC
CTTCTTCGGCTAGTATCCATTTCCGGCTTATGAACCCACTCAAATTCTCC
TCCCTTGGTATCAAATGTTCCATGCTGCAGACTGACCAACTTCAGTGTAA
ATCGAGGACCACGCTCCTGAAGGCGAGTGATTACTTTCTGTTGAGAAGTC
TTTTCACTCTTCGCATCTTTCGCTTTCTTACCATTTGCGTCACTCCCTTT
ACTTTCTTTGGTTTCTAATATATACCGATGATGTCGGAAGAATATGAAAT
CTCGTTGATTGTGAAAAGTCACTCACTCGACGACCTCTGAATTCTGGACT
TTGAGGGAAAAGTGACTGTATCAATCTC
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