DN621538

Overview
NameDN621538
Unique NameDN621538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2862 contig Csv1_Contig2862:14..687. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_BRANA (3-isopropylmalate dehydrogenase, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 325.479 bits (833), Expect = 1.592e-88
Identity = 167/225 (74.22%), Postives = 193/225 (85.78%), Query Frame = 1
Query:    1 AASVQLNAKLLGPAFIVKPATKHFLK-PARIRCXXXXXXXXXKRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            AA++Q N + +     ++  TK     P R+RC         KRY+ITLLPGDGIGPEVI++AKNVL+ AGSLEG+EF+FQEMP+GG+ALDLVGVPLPEET++AAK+SDAVLLGAIGGYKWDKNEKHLKPETGLLQ+R GLKVFANLRPATVLPQLVD+STLK+EVAEGVDLMVVRELTGGIYFG PRG    E+GEE+G+NTEVYAA+E+DRIARVAFETARKR
Sbjct:    2 AAALQTNIRPVKFPATLRALTKQSSPAPFRVRCAAASPGK--KRYNITLLPGDGIGPEVISIAKNVLQQAGSLEGLEFSFQEMPVGGAALDLVGVPLPEETVSAAKESDAVLLGAIGGYKWDKNEKHLKPETGLLQLRAGLKVFANLRPATVLPQLVDASTLKREVAEGVDLMVVRELTGGIYFGVPRGIKTNENGEEVGYNTEVYAAHEIDRIARVAFETARKR 224          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU32_ARATH (3-isopropylmalate dehydrogenase 2, chloroplastic OS=Arabidopsis thaliana GN=IMDH2 PE=2 SV=1)

HSP 1 Score: 325.094 bits (832), Expect = 2.079e-88
Identity = 163/224 (72.77%), Postives = 190/224 (84.82%), Query Frame = 1
Query:    1 AASVQLNAKLLGPAFIVKPATKHFLKPARIRCXXXXXXXXXKRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            AA++Q N + +      +  +K  L P R+RC         KRY+ITLLPGDGIGPEV+++AKNVL+ AGSLEG+EF F+EMP+GG+ALDLVGVPLPEET++AAK+SDAVLLGAIGGYKWD NEKHL+PE GLLQIR  LKVFANLRPATVLPQLVD+STLK+EVAEGVDLMVVRELTGGIYFG+PRG    E+GEE+GFNTEVYAA+E+DRIARVAFETARKR
Sbjct:    2 AAALQTNIRTVKVPATFRAVSKQSLAPFRVRCAVASPGK--KRYTITLLPGDGIGPEVVSIAKNVLQQAGSLEGVEFNFREMPIGGAALDLVGVPLPEETISAAKESDAVLLGAIGGYKWDNNEKHLRPEKGLLQIRAALKVFANLRPATVLPQLVDASTLKREVAEGVDLMVVRELTGGIYFGEPRGIKTNENGEEVGFNTEVYAAHEIDRIARVAFETARKR 223          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU31_ARATH (3-isopropylmalate dehydrogenase 1, chloroplastic OS=Arabidopsis thaliana GN=IMDH1 PE=1 SV=2)

HSP 1 Score: 314.694 bits (805), Expect = 2.810e-85
Identity = 162/225 (72.00%), Postives = 184/225 (81.78%), Query Frame = 1
Query:    1 AASVQLNAKL-LGPAFIVKPATKHFLKPARIRCXXXXXXXXXKRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            AA +Q N +L + P          F  P RIRC         KRY+ITLLPGDGIGPEVI+VAKNVL+ AG L+G+EF FQEMP GG+ALDLVGVPLPEET  AAKQSDA+LLGAIGGYKWDKNEKHL+PE GLL IR  L VFANLRPATVLPQLVD+STLKKEVA+GVD+M+VRELTGGIYFG+PRG  + E+GEE+GFNTE+YAA+E+DRIARVAFETARKR
Sbjct:    2 AAFLQTNIRLEIIPGRYSSLTDHKFRAPYRIRCAAASPVK--KRYNITLLPGDGIGPEVISVAKNVLQKAGFLQGLEFDFQEMPFGGAALDLVGVPLPEETSTAAKQSDAILLGAIGGYKWDKNEKHLRPEMGLLNIRRDLNVFANLRPATVLPQLVDASTLKKEVAQGVDMMIVRELTGGIYFGEPRGITINENGEEVGFNTEIYAAHEIDRIARVAFETARKR 224          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU33_ARATH (3-isopropylmalate dehydrogenase 3, chloroplastic OS=Arabidopsis thaliana GN=IMDH3 PE=1 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 2.014e-83
Identity = 156/222 (70.27%), Postives = 180/222 (81.08%), Query Frame = 1
Query:    7 SVQLNAKLLGPAFIVKPATKHFLKPARIRCXXXXXXXXXKRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            ++ LNA  + P          F  P RIRC         KRY+I LLPGDGIGPEVI+VAKNVL+ AGSLEG+EF F+EMP+GG+ALDLVGVPLPEET  AAK SDA+LLGAIGGYKWDKNEKHL+PE  L  +R  LKVFANLRPATVLPQLVD+STLKKEVAEGVD+M+VRELTGGIYFG+PRG  + E+GEE+G +TE+YAA+E+DRIARVAFETARKR
Sbjct:    8 NISLNAIKIVPGKYSSLTDHQFRAPYRIRCAAASPGK--KRYNIALLPGDGIGPEVISVAKNVLQKAGSLEGLEFDFKEMPVGGAALDLVGVPLPEETFTAAKLSDAILLGAIGGYKWDKNEKHLRPEMALFYLRRDLKVFANLRPATVLPQLVDASTLKKEVAEGVDMMIVRELTGGIYFGEPRGITINENGEEVGVSTEIYAAHEIDRIARVAFETARKR 227          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_ANAVT (3-isopropylmalate dehydrogenase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=leuB PE=3 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 3.023e-63
Identity = 120/183 (65.57%), Postives = 142/183 (77.60%), Query Frame = 1
Query:  124 KRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            + Y ITLLPGDGIGPE++AVA +VLK+ G    I+F FQE  +GG+A+D  G PLP  TL   +QSDAVLL AIGGYKWD    H +PE GLL +R GL++FANLRPA +LPQL+D+STLK+EV EGVD+MVVRELTGGIYFGKPRG   TE GE+ G NT VY   E+DRI R+AFETARKR
Sbjct:    3 QNYRITLLPGDGIGPEIMAVAVDVLKVVGQQFDIQFDFQEALIGGAAIDATGEPLPSATLDTCRQSDAVLLAAIGGYKWDSLPPHQRPEGGLLGLRAGLELFANLRPAQILPQLIDASTLKREVVEGVDIMVVRELTGGIYFGKPRGIFTTETGEKRGVNTMVYTESEIDRIGRIAFETARKR 185          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_ANASP (3-isopropylmalate dehydrogenase OS=Anabaena sp. (strain PCC 7120) GN=leuB PE=3 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.149e-62
Identity = 119/183 (65.03%), Postives = 141/183 (77.05%), Query Frame = 1
Query:  124 KRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            + Y ITLLPGDGIGPE++AVA +VLK+ G    I+F FQE  +GG+A+D  G PLP  TL   + SDAVLL AIGGYKWD    H +PE GLL +R GL++FANLRPA +LPQL+D+STLK+EV EGVD+MVVRELTGGIYFGKPRG   TE GE+ G NT VY   E+DRI R+AFETARKR
Sbjct:    3 QNYRITLLPGDGIGPEIMAVAVDVLKVVGQQFDIQFDFQEALIGGAAIDATGEPLPSATLDTCRHSDAVLLAAIGGYKWDSLPPHQRPEGGLLGLRAGLELFANLRPAQILPQLIDASTLKREVVEGVDIMVVRELTGGIYFGKPRGIFTTETGEKRGVNTMVYTESEIDRIGRIAFETARKR 185          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_SYNY3 (3-isopropylmalate dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=leuB PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.659e-61
Identity = 119/181 (65.75%), Postives = 139/181 (76.80%), Query Frame = 1
Query:  130 YSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            Y++TLLPGDGIGPE++AVA  VL       G  F FQE  +GG+A+D  G PLPE TLA AK SDAVLL AIGGY WD   +  +PETGLL IREGL +FANLRPAT+ PQL+D+S+LK+EV EGVD+MVVRELTGGIYFGKP+G   TE GE+ G NT  Y   E+DRIA+VAFETARKR
Sbjct:    5 YNVTLLPGDGIGPEIMAVAVAVLGKVADQFGFAFNFQEALIGGAAIDATGQPLPEATLAQAKDSDAVLLAAIGGYAWDNLPRSQRPETGLLAIREGLGLFANLRPATIFPQLIDASSLKREVVEGVDIMVVRELTGGIYFGKPKGIFETETGEKRGVNTMAYTVGEIDRIAKVAFETARKR 185          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_SYNP6 (3-isopropylmalate dehydrogenase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=leuB PE=3 SV=2)

HSP 1 Score: 227.254 bits (578), Expect = 5.899e-59
Identity = 113/183 (61.75%), Postives = 137/183 (74.86%), Query Frame = 1
Query:  124 KRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            + Y ITLLPGDGIGPE++AV  ++L+  G    + F F+E  +GGSA+D  G PLPE TLA  + SDAVLL AIGGYKWD   +  +PETGLL +R GL +FANLRPA +LPQLVD+S+LK+EV EGVDLMVVRELTGGIYFG+P+G    E G +  FNT VY   E+DRI RVAF+ ARKR
Sbjct:    3 RSYRITLLPGDGIGPEIMAVTVDILRAIGRQFDLNFEFEEALIGGSAIDATGEPLPEATLATCRNSDAVLLAAIGGYKWDSLPRSQRPETGLLGLRAGLGLFANLRPAAILPQLVDASSLKREVIEGVDLMVVRELTGGIYFGEPKGCFADEQGRQRAFNTMVYREDEIDRIGRVAFDIARKR 185          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_SYNE7 (3-isopropylmalate dehydrogenase OS=Synechococcus elongatus (strain PCC 7942) GN=leuB PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 5.899e-59
Identity = 113/183 (61.75%), Postives = 137/183 (74.86%), Query Frame = 1
Query:  124 KRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            + Y ITLLPGDGIGPE++AV  ++L+  G    + F F+E  +GGSA+D  G PLPE TLA  + SDAVLL AIGGYKWD   +  +PETGLL +R GL +FANLRPA +LPQLVD+S+LK+EV EGVDLMVVRELTGGIYFG+P+G    E G +  FNT VY   E+DRI RVAF+ ARKR
Sbjct:    3 RSYRITLLPGDGIGPEIMAVTVDILRAIGRQFDLNFEFEEALIGGSAIDATGEPLPEATLATCRNSDAVLLAAIGGYKWDSLPRSQRPETGLLGLRAGLGLFANLRPAAILPQLVDASSLKREVIEGVDLMVVRELTGGIYFGEPKGCFADEQGRQRAFNTMVYREDEIDRIGRVAFDIARKR 185          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_THEEB (3-isopropylmalate dehydrogenase OS=Thermosynechococcus elongatus (strain BP-1) GN=leuB PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.230e-56
Identity = 112/181 (61.88%), Postives = 133/181 (73.48%), Query Frame = 1
Query:  130 YSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            Y I +L GDGIGPE+ AVA +VL+      G++F F    +GG A+D VG PLP  TLA  +QSDAVLL AIGG +WD   +HL+PETGLL +R GL +FANLRPA + PQL+ +S+LK EV  GVDLMVVRELTGGIYFG+PRG   TE GE+ G NT  Y A E+DRI RVAFETARKR
Sbjct:    5 YRIAVLAGDGIGPEITAVALDVLRAIAPRFGLDFDFVPALVGGCAIDAVGEPLPAATLATCRQSDAVLLAAIGGTQWDSLPRHLRPETGLLALRSGLGLFANLRPAKIFPQLLHASSLKPEVIAGVDLMVVRELTGGIYFGQPRGIFTTETGEQRGVNTMAYTATEIDRIGRVAFETARKR 185          
The following BLAST results are available for this feature:
BLAST of DN621538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 292
Match NameE-valueIdentityDescription
LEU3_BRANA1.592e-8874.223-isopropylmalate dehydrogenase, chloroplastic OS=... [more]
LEU32_ARATH2.079e-8872.773-isopropylmalate dehydrogenase 2, chloroplastic O... [more]
LEU31_ARATH2.810e-8572.003-isopropylmalate dehydrogenase 1, chloroplastic O... [more]
LEU33_ARATH2.014e-8370.273-isopropylmalate dehydrogenase 3, chloroplastic O... [more]
LEU3_ANAVT3.023e-6365.573-isopropylmalate dehydrogenase OS=Anabaena variab... [more]
LEU3_ANASP1.149e-6265.033-isopropylmalate dehydrogenase OS=Anabaena sp. (s... [more]
LEU3_SYNY31.659e-6165.753-isopropylmalate dehydrogenase OS=Synechocystis s... [more]
LEU3_SYNP65.899e-5961.753-isopropylmalate dehydrogenase OS=Synechococcus s... [more]
LEU3_SYNE75.899e-5961.753-isopropylmalate dehydrogenase OS=Synechococcus e... [more]
LEU3_THEEB1.230e-5661.883-isopropylmalate dehydrogenase OS=Thermosynechoco... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_06N15_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621538 ID=DN621538; Name=DN621538; organism=Citrus sinensis; type=EST; length=674bp
GCGGCGTCAGTGCAGCTGAATGCGAAGCTACTTGGACCCGCGTTTATTGT
TAAACCCGCAACCAAACACTTTCTTAAACCGGCAAGAATCAGGTGCGCCG
CTGCTGCCACCGCACCACCCACCAAACGGTACAGCATCACTCTACTCCCC
GGCGATGGCATCGGCCCCGAAGTCATCGCCGTCGCCAAAAACGTCCTCAA
GCTCGCTGGCTCTCTCGAAGGGATTGAATTTGCATTCCAAGAGATGCCAA
TGGGGGGATCAGCCTTGGATTTGGTTGGAGTTCCGTTACCTGAGGAGACA
CTTGCAGCAGCGAAGCAATCTGATGCAGTTCTACTTGGCGCAATTGGAGG
GTATAAATGGGATAAAAATGAGAAACATTTGAAGCCAGAGACTGGATTGC
TTCAGATTCGAGAAGGTCTTAAAGTCTTTGCAAATTTGAGGCCAGCAACT
GTTTTACCACAGTTAGTGGACTCTTCCACTTTGAAGAAGGAGGTTGCTGA
AGGTGTTGACCTTATGGTTGTAAGGGAGCTCACCGGAGGTATTTATTTTG
GAAAGCCCAGGGGCTATGGTGTTACTGAACATGGTGAGGAGATTGGCTTC
AATACAGAGGTTTATGCTGCCTACGAGGTGGATCGTATTGCTCGTGTTGC
TTTTGAGACTGCTCGGAAACGTCA
back to top