DN621537

Overview
NameDN621537
Unique NameDN621537
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2862 contig Csv1_Contig2862:750..1498. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN621537 vs. ExPASy Swiss-Prot
Match: LEU33_ARATH (3-isopropylmalate dehydrogenase 3, chloroplastic OS=Arabidopsis thaliana GN=IMDH3 PE=1 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 3.411e-77
Identity = 145/160 (90.62%), Postives = 153/160 (95.62%), Query Frame = -2
Query:  269 ITAIASEYPDVELSHMYVDNAAMQLIRNPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLKYGLGEEHAAKRIEKAVLDTLDKGLRTGDIYSAGTKLVGCQEMGEEVLKSVETQVPAAV 748
            +TA+ASEYPDVELSHMYVDNAAMQLIR+PKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLKYGLGEE AAKRIE AV+D L+KG RTGDIYS G KLVGC+EMGEEVLKSVE++VPA V
Sbjct:  250 VTALASEYPDVELSHMYVDNAAMQLIRDPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLKYGLGEEKAAKRIEDAVVDALNKGFRTGDIYSPGNKLVGCKEMGEEVLKSVESKVPATV 409          
BLAST of DN621537 vs. ExPASy Swiss-Prot
Match: LEU32_ARATH (3-isopropylmalate dehydrogenase 2, chloroplastic OS=Arabidopsis thaliana GN=IMDH2 PE=2 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 3.771e-76
Identity = 143/160 (89.38%), Postives = 153/160 (95.62%), Query Frame = -2
Query:  269 ITAIASEYPDVELSHMYVDNAAMQLIRNPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLKYGLGEEHAAKRIEKAVLDTLDKGLRTGDIYSAGTKLVGCQEMGEEVLKSVETQVPAAV 748
            +TA+ASEYPDVELSHMYVDNAAMQL+R+PKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASL +SGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLKYGLGEE AAKRIE AVL  L+ G RTGDIYSAGTKLVGC+EMGEEVLKSV++QVPA+V
Sbjct:  246 VTALASEYPDVELSHMYVDNAAMQLVRDPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLSDSGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLKYGLGEEKAAKRIEDAVLVALNNGFRTGDIYSAGTKLVGCKEMGEEVLKSVDSQVPASV 405          
BLAST of DN621537 vs. ExPASy Swiss-Prot
Match: LEU3_BRANA (3-isopropylmalate dehydrogenase, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 4.169e-75
Identity = 141/160 (88.12%), Postives = 152/160 (95.00%), Query Frame = -2
Query:  269 ITAIASEYPDVELSHMYVDNAAMQLIRNPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLKYGLGEEHAAKRIEKAVLDTLDKGLRTGDIYSAGTKLVGCQEMGEEVLKSVETQVPAAV 748
            +TA+A+EYPDVELSHMYVDNAAMQL+R+PKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASL +SGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLKYGLGEE AAKRIE AVL  L+KG RTGDIYSAGTKLVGC+EMGEEVLKSV++ V A+V
Sbjct:  247 VTALAAEYPDVELSHMYVDNAAMQLVRDPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLSDSGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLKYGLGEEKAAKRIEDAVLGALNKGFRTGDIYSAGTKLVGCKEMGEEVLKSVDSHVQASV 406          
BLAST of DN621537 vs. ExPASy Swiss-Prot
Match: LEU31_ARATH (3-isopropylmalate dehydrogenase 1, chloroplastic OS=Arabidopsis thaliana GN=IMDH1 PE=1 SV=2)

HSP 1 Score: 281.182 bits (718), Expect = 4.169e-75
Identity = 140/157 (89.17%), Postives = 150/157 (95.54%), Query Frame = -2
Query:  278 ITAIASEYPDVELSHMYVDNAAMQLIRNPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLKYGLGEEHAAKRIEKAVLDTLDKGLRTGDIYSAGTKLVGCQEMGEEVLKSVETQVP 748
            +TA+ASEYPDVELSHMYVDNAAMQL+R+PKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLKYGLGEE AAK IE AV+D L+KG RTGDIYS G KLVGC+EMGEEVLKSV+++VP
Sbjct:  247 VTALASEYPDVELSHMYVDNAAMQLVRDPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLKYGLGEEKAAKMIEDAVVDALNKGFRTGDIYSPGNKLVGCKEMGEEVLKSVDSKVP 403          
BLAST of DN621537 vs. ExPASy Swiss-Prot
Match: LEU3_SYNY3 (3-isopropylmalate dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=leuB PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.456e-59
Identity = 109/153 (71.24%), Postives = 133/153 (86.93%), Query Frame = -2
Query:  290 ITAIASEYPDVELSHMYVDNAAMQLIRNPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLKYGLGEEHAAKRIEKAVLDTLDKGLRTGDIYSAGTKLVGCQEMGEEVLKSVE 748
            + AIA +YPDVELSH+YVDNAAMQL+R+P+QFDTIVT N+FGDILSD A+M+TGSIGMLPSASLG  GPGLFEP+HGSAPDIAGQDKANPLA +LSAAM+L+YGL +  AA R+E AV   L++G RTGDI S GT+LVGC++MGE++L  ++
Sbjct:  208 VMAIAVDYPDVELSHLYVDNAAMQLVRSPRQFDTIVTGNLFGDILSDIAAMLTGSIGMLPSASLGSDGPGLFEPVHGSAPDIAGQDKANPLAQVLSAAMMLRYGLDQPQAADRLEDAVKKVLEQGYRTGDILSPGTQLVGCRQMGEQLLSILD 360          
BLAST of DN621537 vs. ExPASy Swiss-Prot
Match: LEU3_SYNJA (3-isopropylmalate dehydrogenase OS=Synechococcus sp. (strain JA-3-3Ab) GN=leuB PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 5.471e-59
Identity = 110/155 (70.97%), Postives = 132/155 (85.16%), Query Frame = -2
Query:  284 ITAIASEYPDVELSHMYVDNAAMQLIRNPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLKYGLGEEHAAKRIEKAVLDTLDKGLRTGDIYSAGTKLVGCQEMGEEVLKSVETQ 748
            +TAIA+EYPDVELSH+YVDNAAMQL+R PKQFD I+T N+FGDILSDEA+M+TGSIGMLPSASLG SGPG++EP+HGSAPDIAGQDKANP+A +LS AMLL+Y L +  AA RIE+AV   L +G RT DIYS G  LVGC+EMGE++L ++  Q
Sbjct:  214 VTAIAAEYPDVELSHLYVDNAAMQLVRWPKQFDVILTENLFGDILSDEAAMLTGSIGMLPSASLGSSGPGVYEPVHGSAPDIAGQDKANPIAQVLSGAMLLRYSLDQPQAADRIEQAVEAVLAQGYRTADIYSEGMTLVGCREMGEKILAALAQQ 368          
BLAST of DN621537 vs. ExPASy Swiss-Prot
Match: LEU3_THEEB (3-isopropylmalate dehydrogenase OS=Thermosynechococcus elongatus (strain BP-1) GN=leuB PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 9.332e-59
Identity = 108/152 (71.05%), Postives = 133/152 (87.50%), Query Frame = -2
Query:  293 ITAIASEYPDVELSHMYVDNAAMQLIRNPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLKYGLGEEHAAKRIEKAVLDTLDKGLRTGDIYSAGTKLVGCQEMGEEVLKSV 748
            +TA+++EYPDVEL+H+YVDNAAMQL+R PKQFDTIVT+N+FGDILSD A+M+TGSIGMLPSASLGESGP LFEP+HGSAPDIAGQDKANPLA +LSAAM+L+YGL +  AA+ IE+A+   LD+G RTGD+ S G  LVGC+EMG  ++K +
Sbjct:  208 LTALSAEYPDVELTHLYVDNAAMQLVRAPKQFDTIVTSNLFGDILSDIAAMLTGSIGMLPSASLGESGPALFEPVHGSAPDIAGQDKANPLAMVLSAAMMLRYGLNQPAAAQAIEEAITAVLDQGYRTGDLMSEGCTLVGCREMGNLLIKEL 359          
BLAST of DN621537 vs. ExPASy Swiss-Prot
Match: LEU3_SYNP6 (3-isopropylmalate dehydrogenase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=leuB PE=3 SV=2)

HSP 1 Score: 226.483 bits (576), Expect = 1.219e-58
Identity = 111/158 (70.25%), Postives = 132/158 (83.54%), Query Frame = -2
Query:  275 ITAIASEYPDVELSHMYVDNAAMQLIRNPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLKYGLGEEHAAKRIEKAVLDTLDKGLRTGDIYSAGTKLVGCQEMGEEVLKSVETQVPA 748
            +T + S+Y DVELSH+YVDNAAMQL+R PKQFDTIVT N+FGDILSD A+M+TGSIGMLPSASLG  GPG+FEP+HGSAPDIAGQDKANPLA +LSAAM+L+YGL E  AA RIE AV   LD+G RTGD+YS G  LVGC+ MG+ +L ++E+ V A
Sbjct:  208 MTLLGSDYADVELSHLYVDNAAMQLVRWPKQFDTIVTGNLFGDILSDIAAMLTGSIGMLPSASLGAEGPGVFEPVHGSAPDIAGQDKANPLAQVLSAAMMLRYGLDEPEAAARIEAAVNQVLDQGYRTGDLYSEGMTLVGCKGMGDALLAALESPVSA 365          
BLAST of DN621537 vs. ExPASy Swiss-Prot
Match: LEU3_SYNE7 (3-isopropylmalate dehydrogenase OS=Synechococcus elongatus (strain PCC 7942) GN=leuB PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.219e-58
Identity = 111/158 (70.25%), Postives = 132/158 (83.54%), Query Frame = -2
Query:  275 ITAIASEYPDVELSHMYVDNAAMQLIRNPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLKYGLGEEHAAKRIEKAVLDTLDKGLRTGDIYSAGTKLVGCQEMGEEVLKSVETQVPA 748
            +T + S+Y DVELSH+YVDNAAMQL+R PKQFDTIVT N+FGDILSD A+M+TGSIGMLPSASLG  GPG+FEP+HGSAPDIAGQDKANPLA +LSAAM+L+YGL E  AA RIE AV   LD+G RTGD+YS G  LVGC+ MG+ +L ++E+ V A
Sbjct:  208 MTLLGSDYADVELSHLYVDNAAMQLVRWPKQFDTIVTGNLFGDILSDIAAMLTGSIGMLPSASLGAEGPGVFEPVHGSAPDIAGQDKANPLAQVLSAAMMLRYGLDEPEAAARIEAAVNQVLDQGYRTGDLYSEGMTLVGCKGMGDALLAALESPVSA 365          
BLAST of DN621537 vs. ExPASy Swiss-Prot
Match: LEU3_ANAVT (3-isopropylmalate dehydrogenase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=leuB PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.631e-58
Identity = 107/153 (69.93%), Postives = 131/153 (85.62%), Query Frame = -2
Query:  290 ITAIASEYPDVELSHMYVDNAAMQLIRNPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLKYGLGEEHAAKRIEKAVLDTLDKGLRTGDIYSAGTKLVGCQEMGEEVLKSVE 748
            IT ++ EYPDVELSH+YVDNAAMQL+R PKQFDTIVT N+FGDILSD A+M+TGSIGMLPSASLG SGPG+FEP+HGSAPDIAG DKANPLA +LSAAM+L+Y L +  AA +IE+AVL  L++G RTGDI S G  L+GC+ MG+ ++K++E
Sbjct:  208 ITKLSQEYPDVELSHLYVDNAAMQLVRAPKQFDTIVTGNLFGDILSDAAAMLTGSIGMLPSASLGASGPGVFEPVHGSAPDIAGLDKANPLAQVLSAAMMLRYALNQPQAADKIEQAVLQVLEQGDRTGDIMSVGMNLLGCRAMGDSLIKALE 360          
The following BLAST results are available for this feature:
BLAST of DN621537 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 372
Match NameE-valueIdentityDescription
LEU33_ARATH3.411e-7790.633-isopropylmalate dehydrogenase 3, chloroplastic O... [more]
LEU32_ARATH3.771e-7689.383-isopropylmalate dehydrogenase 2, chloroplastic O... [more]
LEU3_BRANA4.169e-7588.133-isopropylmalate dehydrogenase, chloroplastic OS=... [more]
LEU31_ARATH4.169e-7589.173-isopropylmalate dehydrogenase 1, chloroplastic O... [more]
LEU3_SYNY32.456e-5971.243-isopropylmalate dehydrogenase OS=Synechocystis s... [more]
LEU3_SYNJA5.471e-5970.973-isopropylmalate dehydrogenase OS=Synechococcus s... [more]
LEU3_THEEB9.332e-5971.053-isopropylmalate dehydrogenase OS=Thermosynechoco... [more]
LEU3_SYNP61.219e-5870.253-isopropylmalate dehydrogenase OS=Synechococcus s... [more]
LEU3_SYNE71.219e-5870.253-isopropylmalate dehydrogenase OS=Synechococcus e... [more]
LEU3_ANAVT4.631e-5869.933-isopropylmalate dehydrogenase OS=Anabaena variab... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06N15_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621537 ID=DN621537; Name=DN621537; organism=Citrus sinensis; type=EST; length=749bp
TCAATTTTAATTTGATTTTCTAATTTGCATCAACATTGAGACACCAGAGC
AAACTGTAAACAAAGTGCAAATTAAAAGACTTGCTTTTATTTTCCAAAAG
TTGTCACAATGATATTCCATGTTACAACAGCTCCAGATGAAGGCGGTTTC
AGAAAGACGGAAAAGATACAACACCAACTCAATATCTTATCAACCAAAAA
TCTACCACCCAAAAGATTACAAAGCCGTGATCCTATAGCATCCTTAGTGC
TGGTCCGATTTTAATTTAAACAGCAGCAGGAACTTGAGTCTCTACTGATT
TCAAAACCTCTTCGCCCATCTCCTGGCATCCTACTAATTTAGTCCCAGCA
GAGTATATGTCACCCGTTCGAAGCCCCTTATCTAGAGTATCTAAAACTGC
TTTCTCAATTCTCTTTGCAGCATGTTCCTCCCCTAAGCCATACTTCAAAA
GCATAGCAGCACTGAGTATAGTAGCCAATGGGTTTGCTTTATCCTGTCCA
GCAATATCGGGAGCAGAACCATGTATTGGTTCAAAGAGTCCAGGTCCCGA
TTCACCAAGACTGGCAGATGGGAGCATTCCTATACTTCCAGTAATCATTG
AAGCCTCATCAGATAAAATGTCACCAAATATGTTGTTTGTCACAATTGTA
TCAAACTGTTTTGGATTGCGAATAAGTTGCATTGCAGCGTTGTCGACATA
CATATGTGAGAGTTCAACATCAGGATACTCTGAGGCTATTGCCGTGATT
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