DN621533

Overview
NameDN621533
Unique NameDN621533
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length657
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12567 contig Csv1_Contig12567:854..1510. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN621533 vs. ExPASy Swiss-Prot
Match: THI4_CITSI (Thiazole biosynthetic enzyme, chloroplastic OS=Citrus sinensis GN=THI1 PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 1.883e-54
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = -2
Query:  339 HDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL 656
            HDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL
Sbjct:  240 HDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL 345          
BLAST of DN621533 vs. ExPASy Swiss-Prot
Match: THI4_ALNGL (Thiazole biosynthetic enzyme, chloroplastic OS=Alnus glutinosa GN=THI4 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 8.188e-50
Identity = 96/106 (90.57%), Postives = 102/106 (96.23%), Query Frame = -2
Query:  339 HDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL 656
            HDGPFGATGVK L+SIGMI+ VPGMKALDMN AEDAIVRLTRE+VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG PNALDG+YVGG+HPELIL
Sbjct:  236 HDGPFGATGVKSLRSIGMIDTVPGMKALDMNVAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGLPNALDGSYVGGIHPELIL 341          
BLAST of DN621533 vs. ExPASy Swiss-Prot
Match: THI4_ARATH (Thiazole biosynthetic enzyme, chloroplastic OS=Arabidopsis thaliana GN=THI1 PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.912e-47
Identity = 93/106 (87.74%), Postives = 99/106 (93.40%), Query Frame = -2
Query:  339 HDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL 656
            HDGPFGATGVKRLKSIGMI+ VPGMKALDMN+AEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKA  LALK+LG PNA+DGT VG + PEL+L
Sbjct:  233 HDGPFGATGVKRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAGQLALKALGLPNAIDGTLVGNLSPELVL 338          
BLAST of DN621533 vs. ExPASy Swiss-Prot
Match: THI41_MAIZE (Thiazole biosynthetic enzyme 1-1, chloroplastic OS=Zea mays GN=THI1-1 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 6.714e-44
Identity = 88/106 (83.02%), Postives = 96/106 (90.57%), Query Frame = -2
Query:  339 HDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL 656
            HDGPFGATGVKRL+ IGMI  VPGMKALDMN+AED IVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG+PNA+DGT    +  EL++
Sbjct:  239 HDGPFGATGVKRLQDIGMISAVPGMKALDMNTAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRPNAVDGTMSPPLREELMI 344          
BLAST of DN621533 vs. ExPASy Swiss-Prot
Match: THI42_MAIZE (Thiazole biosynthetic enzyme 1-2, chloroplastic OS=Zea mays GN=THI1-2 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.551e-43
Identity = 86/95 (90.53%), Postives = 91/95 (95.79%), Query Frame = -2
Query:  372 HDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGT 656
            HDGPFGATGVKRL+ IGMI  VPGMKALDMN+AED IVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG+PNA+DGT
Sbjct:  236 HDGPFGATGVKRLQDIGMISAVPGMKALDMNAAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRPNAVDGT 330          
BLAST of DN621533 vs. ExPASy Swiss-Prot
Match: THI4_FUSSH (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium solani subsp. phaseoli GN=STI35 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.980e-25
Identity = 57/84 (67.86%), Postives = 69/84 (82.14%), Query Frame = -2
Query:  405 HDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 656
            HD P GA  VKRL S+G IE++ GM+ LDMN AEDAIV+ TRE+VPG+IV GME++E+DGA RMGPTFGAM++SG KAA  ALK
Sbjct:  230 HDAPMGAFCVKRLVSMGRIEKLGGMRGLDMNVAEDAIVKGTREIVPGLIVGGMELSEVDGANRMGPTFGAMVLSGLKAAEEALK 313          
BLAST of DN621533 vs. ExPASy Swiss-Prot
Match: THI4_FUSOX (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium oxysporum GN=STI35 PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.031e-24
Identity = 57/84 (67.86%), Postives = 68/84 (80.95%), Query Frame = -2
Query:  405 HDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 656
            HDGP GA  VKRL S+  IE++ GM+ LDMN AEDAIV+ TRE+VPG+IV GME++E+DGA RMGPTFGAM +SG KAA  ALK
Sbjct:  226 HDGPMGAFCVKRLVSMQRIEKLGGMRGLDMNLAEDAIVKGTREIVPGLIVGGMELSEVDGANRMGPTFGAMALSGLKAAEEALK 309          
BLAST of DN621533 vs. ExPASy Swiss-Prot
Match: THI4_ASPOR (Thiazole biosynthetic enzyme, mitochondrial OS=Aspergillus oryzae GN=thiA PE=3 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 3.464e-24
Identity = 55/84 (65.48%), Postives = 68/84 (80.95%), Query Frame = -2
Query:  405 HDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 656
            HDGPFGA   KRL S+G ++++ GM+ LDMNSAEDAIV+ TREV  G+I+ GME++EIDG  RMGPTFGAM++SG KAA  ALK
Sbjct:  233 HDGPFGAFCAKRLVSMGSVDKLGGMRGLDMNSAEDAIVKNTREVTKGLIIGGMELSEIDGFNRMGPTFGAMVLSGVKAAEEALK 316          
BLAST of DN621533 vs. ExPASy Swiss-Prot
Match: THI4_UROFA (Thiazole biosynthetic enzyme, mitochondrial OS=Uromyces fabae GN=THI2 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.008e-23
Identity = 54/98 (55.10%), Postives = 72/98 (73.47%), Query Frame = -2
Query:  363 HDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVG 656
            HDGPFGA  VKR+ S G+ E +  M+ LDM  AED I   TRE++PG+IV GME++E DG+ RMGPTFGAM++SG++AA +AL+SL +    +G  VG
Sbjct:  238 HDGPFGAFCVKRVASAGLSEGLGDMRPLDMERAEDHIANKTREILPGLIVGGMELSEFDGSARMGPTFGAMLLSGKRAAEVALQSLDRVKIEEGEVVG 335          
BLAST of DN621533 vs. ExPASy Swiss-Prot
Match: THI2_SCHPO (Thiazole biosynthetic enzyme, mitochondrial OS=Schizosaccharomyces pombe GN=thi2 PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 8.533e-23
Identity = 56/97 (57.73%), Postives = 67/97 (69.07%), Query Frame = -2
Query:  366 HDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYV 656
            HDGPFGA  VKRL S  ++  +  M+ LDMN AED IV+ TREV PGMIV GME++E DGA RMGPTFG MM SG KAA  AL    +  A++  Y+
Sbjct:  232 HDGPFGAFCVKRLASAQLVSNLHDMRPLDMNRAEDLIVKGTREVFPGMIVGGMELSEFDGANRMGPTFGGMMFSGIKAAQEALAIFDERKAVNEKYL 328          
The following BLAST results are available for this feature:
BLAST of DN621533 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
THI4_CITSI1.883e-54100.00Thiazole biosynthetic enzyme, chloroplastic OS=Cit... [more]
THI4_ALNGL8.188e-5090.57Thiazole biosynthetic enzyme, chloroplastic OS=Aln... [more]
THI4_ARATH2.912e-4787.74Thiazole biosynthetic enzyme, chloroplastic OS=Ara... [more]
THI41_MAIZE6.714e-4483.02Thiazole biosynthetic enzyme 1-1, chloroplastic OS... [more]
THI42_MAIZE2.551e-4390.53Thiazole biosynthetic enzyme 1-2, chloroplastic OS... [more]
THI4_FUSSH6.980e-2567.86Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI4_FUSOX2.031e-2467.86Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI4_ASPOR3.464e-2465.48Thiazole biosynthetic enzyme, mitochondrial OS=Asp... [more]
THI4_UROFA1.008e-2355.10Thiazole biosynthetic enzyme, mitochondrial OS=Uro... [more]
THI2_SCHPO8.533e-2357.73Thiazole biosynthetic enzyme, mitochondrial OS=Sch... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06N12_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006N12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621533 ID=DN621533; Name=DN621533; organism=Citrus sinensis; type=EST; length=657bp
TTTTTTTTAAAAGGGAACAGCCCAAGGGCAGTCTTACACATAACACAGAT
AACAAGGACTAGATACGCAACTGCAAATTCACCTCCGAAAAACTCACAAC
GGTTTCTTACAAGAGGAGAAAGAAATTAAAATTAAAGGTTCCATGATGGA
CCGGAAACAAACACTTTATTCACAAAACCTCACAACATTATCTCATTATT
CGCATCAACCATCCATCACAACCACCTAAATACAACTACTTTTTTGCCAG
AGTTTATTTGCATGCACACAGCTGATGAGTGATGATGCCTGTTATTACCA
AATTAAGCATCAGCAGTCTCAGCAGAATCAGCTGCAGCTAAGATCAGCTC
AGGGTGAACGCCTCCCACATATGTACCGTCTAATGCATTCGGCTGGCCCA
GTGACTTCAACGCCAAATGCGCAGCCTTCTGCCCCGATATCATCATTGCT
CCAAATGTTGGCCCCATTCGAGGAGCACCATCAATCTCGGCAACTTCCAT
GCCGGTAACTATCATACCAGGCACAACCTCCCTGGTCAGCCTCACAATAG
CATCTTCTGCAGAGTTCATGTCCAGTGCCTTCATTCCAGGCACTTCCTCA
ATCATTCCGATACTCTTCAACCTCTTTACTCCAGTGGCCCCAAAAGGCCC
ATCATGG
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