DN621525

Overview
NameDN621525
Unique NameDN621525
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8813 contig Csv1_Contig8813:589..1219. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN621525 vs. ExPASy Swiss-Prot
Match: ARFF_ARATH (Auxin response factor 6 OS=Arabidopsis thaliana GN=ARF6 PE=2 SV=2)

HSP 1 Score: 226.868 bits (577), Expect = 6.761e-59
Identity = 113/145 (77.93%), Postives = 122/145 (84.14%), Query Frame = -3 
Query:  207 ENVGQVNPPNRTFVKVYKSGSFGRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPPEVQQMGKRGNELLNSVP----IQRL-SNSSCDDYATRQDSRNLSAGITSVG 626
            EN+G  NP + TFVKVYKSGSFGRSLDI+KFSSYHELRSELARMFGLEG LEDP+RSGWQLVFVDRENDVLLLGD PWPEFV+SVWCIKILSP EVQQMGKRG ELLNS P    + +L SN +CDD+  R D RNL  GI SVG
Sbjct:  786 ENLGSENPQSNTFVKVYKSGSFGRSLDISKFSSYHELRSELARMFGLEGQLEDPVRSGWQLVFVDRENDVLLLGDDPWPEFVSSVWCIKILSPQEVQQMGKRGLELLNSAPSSNNVDKLPSNGNCDDFGNRSDPRNLGNGIASVG 930
[Close]
BLAST of DN621525 vs. ExPASy Swiss-Prot
Match: ARFQ_ORYSJ (Auxin response factor 17 OS=Oryza sativa subsp. japonica GN=ARF17 PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 3.593e-52
Identity = 104/139 (74.82%), Postives = 119/139 (85.61%), Query Frame = -3 
Query:  195 VNPPNRTFVKVYKSGSFGRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPPEVQQMGKRGNELLNSVPIQRLSNSSCDDYATRQDSRNLSAGITSVGSLDF 611
            +N P  TFVKVYKSG++GRSLDIT+FSSYHELR EL R+FGLEG LE+PLRSGWQLVFVDRE+DVLL+GD PW EFVNSV CIKILSP EVQQMGK   ELL+S P +RL  SSCDDY +RQ+SR+LS GI SVGS++F
Sbjct:  781 INRPPATFVKVYKSGTYGRSLDITRFSSYHELRRELGRLFGLEGQLENPLRSGWQLVFVDREDDVLLVGDDPWQEFVNSVSCIKILSPQEVQQMGK-PFELLSSAPGKRL-GSSCDDYVSRQESRSLSTGIASVGSVEF 917
[Close]
BLAST of DN621525 vs. ExPASy Swiss-Prot
Match: ARFQ_ORYSI (Auxin response factor 17 OS=Oryza sativa subsp. indica GN=ARF17 PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 3.593e-52
Identity = 104/139 (74.82%), Postives = 119/139 (85.61%), Query Frame = -3 
Query:  195 VNPPNRTFVKVYKSGSFGRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPPEVQQMGKRGNELLNSVPIQRLSNSSCDDYATRQDSRNLSAGITSVGSLDF 611
            +N P  TFVKVYKSG++GRSLDIT+FSSYHELR EL R+FGLEG LE+PLRSGWQLVFVDRE+DVLL+GD PW EFVNSV CIKILSP EVQQMGK   ELL+S P +RL  SSCDDY +RQ+SR+LS GI SVGS++F
Sbjct:  781 INRPPATFVKVYKSGTYGRSLDITRFSSYHELRRELGRLFGLEGQLENPLRSGWQLVFVDREDDVLLVGDDPWQEFVNSVSCIKILSPQEVQQMGK-PFELLSSAPGKRL-GSSCDDYVSRQESRSLSTGIASVGSVEF 917
[Close]
BLAST of DN621525 vs. ExPASy Swiss-Prot
Match: ARFF_ORYSJ (Auxin response factor 6 OS=Oryza sativa subsp. japonica GN=ARF6 PE=1 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 4.693e-52
Identity = 104/144 (72.22%), Postives = 119/144 (82.64%), Query Frame = -3 
Query:  195 ENVGQVNPPNRTFVKVYKSGSFGRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPPEVQQMGKRGNELLNSVPIQRLSNSSCDDYATRQDSRNLSAGITSVGSLDF 626
            +N  QV  P+ TFVKVYKSG+ GR LDIT+FSSYHELRSE+ R+FGLEG LEDPLRSGWQLVFVDRE+DVLL+GD PW EFVNSV CIKILSP EVQQMGK G EL  S   +RL N SCD+Y +RQ+SR+LS GI SVGS++F
Sbjct:  767 DNADQVKRPHATFVKVYKSGTVGRLLDITRFSSYHELRSEVGRLFGLEGQLEDPLRSGWQLVFVDREDDVLLVGDDPWQEFVNSVSCIKILSPQEVQQMGKPGIELF-STSARRLGN-SCDNYMSRQESRSLSTGIASVGSVEF 908
[Close]
BLAST of DN621525 vs. ExPASy Swiss-Prot
Match: ARFF_ORYSI (Auxin response factor 6 OS=Oryza sativa subsp. indica GN=ARF6 PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 4.693e-52
Identity = 104/144 (72.22%), Postives = 119/144 (82.64%), Query Frame = -3 
Query:  195 ENVGQVNPPNRTFVKVYKSGSFGRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPPEVQQMGKRGNELLNSVPIQRLSNSSCDDYATRQDSRNLSAGITSVGSLDF 626
            +N  QV  P+ TFVKVYKSG+ GR LDIT+FSSYHELRSE+ R+FGLEG LEDPLRSGWQLVFVDRE+DVLL+GD PW EFVNSV CIKILSP EVQQMGK G EL  S   +RL N SCD+Y +RQ+SR+LS GI SVGS++F
Sbjct:  767 DNADQVKRPHATFVKVYKSGTVGRLLDITRFSSYHELRSEVGRLFGLEGQLEDPLRSGWQLVFVDREDDVLLVGDDPWQEFVNSVSCIKILSPQEVQQMGKPGIELF-STSARRLGN-SCDNYMSRQESRSLSTGIASVGSVEF 908
[Close]
BLAST of DN621525 vs. ExPASy Swiss-Prot
Match: ARFY_ORYSJ (Auxin response factor 25 OS=Oryza sativa subsp. japonica GN=ARF25 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.013e-46
Identity = 92/146 (63.01%), Postives = 112/146 (76.71%), Query Frame = -3 
Query:  195 PENVGQVNPPN-RTFVKVYKSGSFGRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPPEVQQMGKRGNELLNSVPIQRLSNSSCDDYATRQDSRNLSAGITSVGSLDF 629
            P N   VNP    TFVKVYKSGS GRSLDI++FSSY ELRSEL R+FGLEG LEDP+RSGWQLVFVDREND+LL+GD PW EF NSVWCIKILSP EVQQ+ + G+ LL+S   +   +++CDDY+   + +N++  I SV  LD+
Sbjct:  754 PLNNISVNPSQGATFVKVYKSGSLGRSLDISRFSSYCELRSELERLFGLEGQLEDPVRSGWQLVFVDRENDILLVGDDPWQEFANSVWCIKILSPQEVQQLVRGGDGLLSSPGARMQQSNACDDYSASHNMQNIAGNIASVAPLDY 899
[Close]
BLAST of DN621525 vs. ExPASy Swiss-Prot
Match: ARFL_ORYSJ (Auxin response factor 12 OS=Oryza sativa subsp. japonica GN=ARF12 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.566e-39
Identity = 76/105 (72.38%), Postives = 89/105 (84.76%), Query Frame = -3 
Query:  312 ENVGQVNPPNRTFVKVYKSGSFGRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPPEVQQMGKRGNE 626
            +N G+ +P  RTFVKVYKSGS GRSLDIT+FS+Y ELR EL +MFG++G L+DP RSGWQLVFVDRENDVLLLGD PW  FVNSVW IKILSP +V +MGK+GN+
Sbjct:  709 QNTGENDPATRTFVKVYKSGSVGRSLDITRFSNYAELREELGQMFGIKGQLDDPDRSGWQLVFVDRENDVLLLGDDPWESFVNSVWYIKILSPEDVHKMGKQGND 813
[Close]
BLAST of DN621525 vs. ExPASy Swiss-Prot
Match: ARFL_ORYSI (Auxin response factor 12 OS=Oryza sativa subsp. indica GN=ARF12 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.566e-39
Identity = 76/105 (72.38%), Postives = 89/105 (84.76%), Query Frame = -3 
Query:  312 ENVGQVNPPNRTFVKVYKSGSFGRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPPEVQQMGKRGNE 626
            +N G+ +P  RTFVKVYKSGS GRSLDIT+FS+Y ELR EL +MFG++G L+DP RSGWQLVFVDRENDVLLLGD PW  FVNSVW IKILSP +V +MGK+GN+
Sbjct:  707 QNTGENDPATRTFVKVYKSGSVGRSLDITRFSNYAELREELGQMFGIKGQLDDPDRSGWQLVFVDRENDVLLLGDDPWESFVNSVWYIKILSPEDVHKMGKQGND 811
[Close]
BLAST of DN621525 vs. ExPASy Swiss-Prot
Match: ARFH_ARATH (Auxin response factor 8 OS=Arabidopsis thaliana GN=ARF8 PE=2 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 8.593e-38
Identity = 75/102 (73.53%), Postives = 85/102 (83.33%), Query Frame = -3 
Query:  318 GQVNPPNRT--FVKVYKSGSFGRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPPEVQQMGKRG 617
            GQ+N  N+T  FVKVYKSGS GRSLDI++FSSYHELR EL +MF +EG LEDPLRSGWQLVFVD+END+LLLGD PW  FVN+VW IKILSP +V QMG  G
Sbjct:  696 GQINSSNQTKNFVKVYKSGSVGRSLDISRFSSYHELREELGKMFAIEGLLEDPLRSGWQLVFVDKENDILLLGDDPWESFVNNVWYIKILSPEDVHQMGDHG 797
[Close]
BLAST of DN621525 vs. ExPASy Swiss-Prot
Match: ARFK_ORYSJ (Auxin response factor 11 OS=Oryza sativa subsp. japonica GN=ARF11 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.677e-31
Identity = 64/103 (62.14%), Postives = 78/103 (75.73%), Query Frame = -3 
Query:  303 VNPPNRTFVKVYKSGSFGRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPPEVQQMGKRGNELLN 611
            + PP RT+ KV K GS GRS+D+T F +YHELRS +A MFGL+G LE P  S W+LV+VD ENDVLL+GD PW EF+N V CI+ILSP EVQQM + G  +LN
Sbjct:  847 MKPPVRTYTKVQKQGSVGRSIDVTGFRNYHELRSAIACMFGLQGKLEHPGSSEWKLVYVDYENDVLLVGDDPWEEFINCVRCIRILSPSEVQQMSENGMHVLN 949
The following BLAST results are available for this feature:
BLAST of DN621525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
ARFF_ARATH6.761e-5977.93Auxin response factor 6 OS=Arabidopsis thaliana GN... [more]
ARFQ_ORYSJ3.593e-5274.82Auxin response factor 17 OS=Oryza sativa subsp. ja... [more]
ARFQ_ORYSI3.593e-5274.82Auxin response factor 17 OS=Oryza sativa subsp. in... [more]
ARFF_ORYSJ4.693e-5272.22Auxin response factor 6 OS=Oryza sativa subsp. jap... [more]
ARFF_ORYSI4.693e-5272.22Auxin response factor 6 OS=Oryza sativa subsp. ind... [more]
ARFY_ORYSJ1.013e-4663.01Auxin response factor 25 OS=Oryza sativa subsp. ja... [more]
ARFL_ORYSJ1.566e-3972.38Auxin response factor 12 OS=Oryza sativa subsp. ja... [more]
ARFL_ORYSI1.566e-3972.38Auxin response factor 12 OS=Oryza sativa subsp. in... [more]
ARFH_ARATH8.593e-3873.53Auxin response factor 8 OS=Arabidopsis thaliana GN... [more]
ARFK_ORYSJ2.677e-3162.14Auxin response factor 11 OS=Oryza sativa subsp. ja... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06N08_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006N08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621525 ID=DN621525; Name=DN621525; organism=Citrus sinensis; type=EST; length=631bp
TTGGACAACTCTCCTAATCAATATTGATTGCGTATTTCATACCACAGAAT
AGAAAATGTATCTTATAATTACAGTTTAGCTTATATATAAACTTTAAGCT
AAAATTAGGTAGCCTCTCGCTACCCCTACGTGGATTGAAACAGACACTAA
TATTACAGAAGAGAGAATGGTATCTTAACTGGTTAAATTGATCAGAAATC
CAGTGACCCCACGGATGTTATACCAGCACTCAAATTTCTGGAGTCCTGCC
GGGTTGCATAATCATCACAGCTGCTGTTGGAGAGCCTCTGAATTGGAACT
GAGTTCAGAAGCTCATTGCCACGTTTGCCCATTTGCTGCACTTCTGGTGG
TGAGAGTATTTTGATACACCACACACTGTTTACAAACTCCGGCCAGGGGC
CATCACCAAGGAGAAGTACATCATTCTCCCGGTCAACGAATACAAGCTGC
CAGCCTGATCTCAGGGGGTCCTCCAAATGGCCTTCAAGGCCAAACATGCG
AGCTAGTTCACTGCGCAGCTCATGGTAGCTACTGAATTTGGTGATATCCA
GTGATCTACCGAAGGAACCCGACTTGTAAACCTTAACAAAGGTTCTGTTG
GGTGGGTTTACTTGGCCCACATTTTCTGGAG
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