DN621524

Overview
NameDN621524
Unique NameDN621524
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7132 contig Csv1_Contig7132:1097..1760. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN621524 vs. ExPASy Swiss-Prot
Match: CESA8_ORYSJ (Probable cellulose synthase A catalytic subunit 8 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA8 PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.036e-60
Identity = 109/128 (85.16%), Postives = 114/128 (89.06%), Query Frame = 3 
Query:    3 NFTVTSKASDEDGDFTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRVDPFTTRVTGPDVEQCGINC 386
            NFTVTSKASDEDGDF ELYMFKW           +INLVGVVAG+SYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVW+ILLASIFSLLWVR+DPFTTRVTGPD + CGINC
Sbjct:  954 NFTVTSKASDEDGDFAELYMFKWTTLLIPPTTILIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWAILLASIFSLLWVRIDPFTTRVTGPDTQTCGINC 1081
[Close]
BLAST of DN621524 vs. ExPASy Swiss-Prot
Match: CESA3_ARATH (Cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Arabidopsis thaliana GN=CESA3 PE=1 SV=2)

HSP 1 Score: 231.491 bits (589), Expect = 3.015e-60
Identity = 107/128 (83.59%), Postives = 115/128 (89.84%), Query Frame = 3 
Query:    3 NFTVTSKASDEDGDFTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRVDPFTTRVTGPDVEQCGINC 386
            NFTVTSKASDEDGDF ELY+FKW           ++NLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWS+LLASIFSLLWVR+DPFT+RVTGPD+ +CGINC
Sbjct:  938 NFTVTSKASDEDGDFAELYLFKWTTLLIPPTTLLIVNLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSVLLASIFSLLWVRIDPFTSRVTGPDILECGINC 1065
[Close]
BLAST of DN621524 vs. ExPASy Swiss-Prot
Match: CESA2_ORYSJ (Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA2 PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 6.718e-60
Identity = 107/128 (83.59%), Postives = 115/128 (89.84%), Query Frame = 3 
Query:    3 NFTVTSKASDEDGDFTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRVDPFTTRVTGPDVEQCGINC 386
            +FTVTSKASDE+GDF ELYMFKW           +INLVGVVAG+SYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVW+ILLASIFSLLWVR+DPFTTRVTGPD ++CGINC
Sbjct:  946 SFTVTSKASDEEGDFAELYMFKWTTLLIPPTTILIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWAILLASIFSLLWVRIDPFTTRVTGPDTQKCGINC 1073
[Close]
BLAST of DN621524 vs. ExPASy Swiss-Prot
Match: CESA2_ORYSI (Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA2 PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 6.718e-60
Identity = 107/128 (83.59%), Postives = 115/128 (89.84%), Query Frame = 3 
Query:    3 NFTVTSKASDEDGDFTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRVDPFTTRVTGPDVEQCGINC 386
            +FTVTSKASDE+GDF ELYMFKW           +INLVGVVAG+SYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVW+ILLASIFSLLWVR+DPFTTRVTGPD ++CGINC
Sbjct:  946 SFTVTSKASDEEGDFAELYMFKWTTLLIPPTTILIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWAILLASIFSLLWVRIDPFTTRVTGPDTQKCGINC 1073
[Close]
BLAST of DN621524 vs. ExPASy Swiss-Prot
Match: CESA7_ARATH (Cellulose synthase A catalytic subunit 7 [UDP-forming] OS=Arabidopsis thaliana GN=CESA7 PE=1 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.022e-52
Identity = 95/128 (74.22%), Postives = 107/128 (83.59%), Query Frame = 3 
Query:    3 NFTVTSKASDEDGDFTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRVDPFTTRVTGPDVEQCGINC 386
            NFTVTSKA+D+D DF ELY FKW           +IN+VGVVAG+S AIN+GYQSWGPLFGKLFF+FWVIVHLYPFLKGLMGRQNRTPTIVV+WS+LLASIFSLLWVR+DPF  +  GPD  +CGINC
Sbjct:  900 NFTVTSKATDDD-DFGELYAFKWTTLLIPPTTVLIINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVLKTKGPDTSKCGINC 1026
[Close]
BLAST of DN621524 vs. ExPASy Swiss-Prot
Match: CESA9_ORYSJ (Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA9 PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 3.947e-52
Identity = 95/129 (73.64%), Postives = 108/129 (83.72%), Query Frame = 3 
Query:    3 NFTVTSKAS-DEDGDFTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRVDPFTTRVTGPDVEQCGINC 386
            NFTVTSKA+ DED +F ELY FKW           ++N++GVVAGVS AIN+G ++WGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVV+WS+LLASIFSLLWVR+DPFT +  GPDV QCGINC
Sbjct:  927 NFTVTSKATGDEDDEFAELYAFKWTTLLIPPTTLLILNIIGVVAGVSDAINNGSEAWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFTIKARGPDVRQCGINC 1055
[Close]
BLAST of DN621524 vs. ExPASy Swiss-Prot
Match: CESA9_ORYSI (Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA9 PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 3.947e-52
Identity = 95/129 (73.64%), Postives = 108/129 (83.72%), Query Frame = 3 
Query:    3 NFTVTSKAS-DEDGDFTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRVDPFTTRVTGPDVEQCGINC 386
            NFTVTSKA+ DED +F ELY FKW           ++N++GVVAGVS AIN+G ++WGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVV+WS+LLASIFSLLWVR+DPFT +  GPDV QCGINC
Sbjct:  927 NFTVTSKATGDEDDEFAELYAFKWTTLLIPPTTLLILNIIGVVAGVSDAINNGSEAWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFTIKARGPDVRQCGINC 1055
[Close]
BLAST of DN621524 vs. ExPASy Swiss-Prot
Match: CESA1_ORYSJ (Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA1 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.500e-51
Identity = 96/129 (74.42%), Postives = 107/129 (82.95%), Query Frame = 3 
Query:    3 NFTVTSKASDEDGDFTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRVDPFTTRV-TGPDVEQCGINC 386
            NFTVTSKASDEDGDF ELY+FKW           VINLVG+VAG+SYAINSGYQSWGPLFGKLFF+ WVI+HLYPFLKGLMGRQNRTPTIV+VWSILLASIFSLLWV++DPF +       + QCG+NC
Sbjct:  948 NFTVTSKASDEDGDFAELYVFKWTSLLIPPTTVLVINLVGMVAGISYAINSGYQSWGPLFGKLFFSIWVILHLYPFLKGLMGRQNRTPTIVIVWSILLASIFSLLWVKIDPFISPTQKAVALGQCGVNC 1076
[Close]
BLAST of DN621524 vs. ExPASy Swiss-Prot
Match: CESA1_ORYSI (Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA1 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.500e-51
Identity = 96/129 (74.42%), Postives = 107/129 (82.95%), Query Frame = 3 
Query:    3 NFTVTSKASDEDGDFTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRVDPFTTRV-TGPDVEQCGINC 386
            NFTVTSKASDEDGDF ELY+FKW           VINLVG+VAG+SYAINSGYQSWGPLFGKLFF+ WVI+HLYPFLKGLMGRQNRTPTIV+VWSILLASIFSLLWV++DPF +       + QCG+NC
Sbjct:  948 NFTVTSKASDEDGDFAELYVFKWTSLLIPPTTVLVINLVGMVAGISYAINSGYQSWGPLFGKLFFSIWVILHLYPFLKGLMGRQNRTPTIVIVWSILLASIFSLLWVKIDPFISPTQKAVALGQCGVNC 1076
[Close]
BLAST of DN621524 vs. ExPASy Swiss-Prot
Match: CESA4_ARATH (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Arabidopsis thaliana GN=CESA4 PE=1 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.404e-49
Identity = 93/129 (72.09%), Postives = 108/129 (83.72%), Query Frame = 3 
Query:    3 NFTVTSK-ASDEDGDFTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRVDPFTTRVTGPDVEQCGINC 386
            NFTVTSK ASDE  +F +LY+FKW           ++N+VGVVAGVS AIN+GY SWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVV+WSILLASIFSL+WVR+DPF  + TGP ++QCG++C
Sbjct:  921 NFTVTSKGASDEADEFGDLYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSILLASIFSLVWVRIDPFLPKQTGPLLKQCGVDC 1049
The following BLAST results are available for this feature:
BLAST of DN621524 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
CESA8_ORYSJ1.036e-6085.16Probable cellulose synthase A catalytic subunit 8 ... [more]
CESA3_ARATH3.015e-6083.59Cellulose synthase A catalytic subunit 3 [UDP-form... [more]
CESA2_ORYSJ6.718e-6083.59Probable cellulose synthase A catalytic subunit 2 ... [more]
CESA2_ORYSI6.718e-6083.59Probable cellulose synthase A catalytic subunit 2 ... [more]
CESA7_ARATH3.022e-5274.22Cellulose synthase A catalytic subunit 7 [UDP-form... [more]
CESA9_ORYSJ3.947e-5273.64Cellulose synthase A catalytic subunit 9 [UDP-form... [more]
CESA9_ORYSI3.947e-5273.64Cellulose synthase A catalytic subunit 9 [UDP-form... [more]
CESA1_ORYSJ1.500e-5174.42Probable cellulose synthase A catalytic subunit 1 ... [more]
CESA1_ORYSI1.500e-5174.42Probable cellulose synthase A catalytic subunit 1 ... [more]
CESA4_ARATH1.404e-4972.09Cellulose synthase A catalytic subunit 4 [UDP-form... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_06N08_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006N08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621524 ID=DN621524; Name=DN621524; organism=Citrus sinensis; type=EST; length=663bp
CCAACTTCACTGTCACCTCCAAGGCATCAGATGAAGACGGAGATTTTACT
GAGCTCTATATGTTCAAATGGACAACACTACTTATTCCACCAACAACTCT
TCTTGTCATAAACTTGGTTGGCGTAGTTGCGGGTGTCTCGTATGCCATCA
ACAGCGGTTATCAATCATGGGGTCCTCTCTTTGGTAAGCTATTCTTTGCC
TTTTGGGTGATCGTCCATCTTTACCCCTTCCTCAAAGGTTTGATGGGACG
CCAAAACCGGACACCCACCATTGTTGTCGTGTGGTCAATTCTCCTTGCCT
CCATATTCTCTTTACTATGGGTGCGAGTTGATCCCTTTACCACCAGAGTC
ACTGGTCCTGATGTCGAGCAATGTGGAATCAACTGCTGACAAATAGTGGC
TGGATTTCAGAAAAATTGTTTTGGTCTCAAGTCTAAAAGGTGGGGAATCA
CTGAAGTTCATGATTTTGCCTCCTCTTCCTGTCAGTGAACTTGTTTGTGT
ATGTGAACTTGTTTTTGTGTATGTGAATTCGCATCTTGTGCAGGATACAT
ATATTTATATATCTATAGGTGGTGAAAACTACAAAAATGGCGTTGTTGTT
TATTTTGGAGAATCTGGAAGATTAGATTATTCTATTTTAATTGATACATG
TAATCAAGCATAC
back to top