DN621514

Overview
NameDN621514
Unique NameDN621514
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length748
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11401 contig Csv1_Contig11401:22..769. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DN621514 vs. ExPASy Swiss-Prot
Match: KIWI_ARATH (RNA polymerase II transcriptional coactivator KIWI OS=Arabidopsis thaliana GN=KIWI PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.795e-33
Identity = 70/107 (65.42%), Postives = 80/107 (74.77%), Query Frame = -2 
Query:  292 MSGKGKRKEEEEYDSDGSVDGHAPPKKASK-TXXXXXXXDIVVCEISKNRRVSVRNWQGKVWVDIREFYVKEGKKFPGKKGISLSVDQWNTLRDHVEEINKALGDNS 609
            MS +GKRK+E+   SD   + HAP KK +K         DIVVC ISKNRRVSVRNW GK+W+DIREFYVK+GK  PGKKGISLSVDQWNTLR+H E+I KAL D S
Sbjct:    1 MSSRGKRKDEDVRASDDESETHAPAKKVAKPADDSDQSDDIVVCNISKNRRVSVRNWNGKIWIDIREFYVKDGKTLPGKKGISLSVDQWNTLRNHAEDIEKALSDLS 107
The following BLAST results are available for this feature:
BLAST of DN621514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
KIWI_ARATH8.795e-3365.42RNA polymerase II transcriptional coactivator KIWI... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_06N03_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006N03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621514 ID=DN621514; Name=DN621514; organism=Citrus sinensis; type=EST; length=748bp
TTTTTTTTTTTTTTTTTCCAAAATCCAGTTATCATTTCCAGCAAATATAA
TACAAAAACATCGACCACCCAATTTAGTTTCTACCCACAAAAAGAAGAAC
CTAACCACCAAAAAATTACTGAAGAATTACTTAGAAACATCAACTACATG
CATCATTTCCAGCAAATATAATACAAAAACATCCACCACCCAGTTTAGTT
TCTGCCCACAAAAAGGAAACCTAGCCACCAACAAACTACCGAAGAATTAC
TTAGAAACATCAACTACATGCTTTCAAATACAATACCCCTAAGAATTATC
ACCAAGTGCCTTATTGATTTCCTCCACATGATCCCGAAGTGTATTCCACT
GATCCACACTCAATGATATACCTTTTTTGCCAGGAAATTTTTTGCCTTCT
TTGACATAAAATTCACGAATGTCAACCCACACCTTGCCTTGCCAGTTCCT
CACTGATACTCTTCTATTCTTCGATATCTCGCAGACGACTATGTCATCAG
AGTCGTCGGAGGAGTCCGTCTTGGAAGCTTTCTTGGGTGGCGCGTGGCCG
TCAACGCTTCCGTCTGAGTCGTACTCCTCTTCTTCCTTTCTCTTTCCCTT
GCCTGACATTTTGTGTTAGACGACGTCGTATCAGTATCTTCTCAGTTCTC
GGCTGAGTTTGCGATTTATACAGAGAACAAGCTGTTAAAACTGATATTCT
TTAGGGAAAATGAAGTGCAAGAATGTAAACTCGGTATGTCCGCATCAG
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