DN621483

Overview
NameDN621483
Unique NameDN621483
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9405 contig Csv1_Contig9405:65..752. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DN621483 vs. ExPASy Swiss-Prot
Match: YJCL_BACSU (Uncharacterized membrane protein yjcL OS=Bacillus subtilis GN=yjcL PE=4 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.217e-14
Identity = 42/101 (41.58%), Postives = 59/101 (58.42%), Query Frame = -1 
Query:  182 FPTQFNKLAPAGEAMALILMQVFFTVVGASGNIWSVINTAPSIFMFALVQIAIHLAVILGLGKLFRFDQKLLLIASNANVGGPTTACGMATAKGWSSLIVP 484
            FP  F +L  + E +   L+ +FF V+G   ++  ++  AP I +F  +    +LAV L  GKLFR   + +L+A NA VGGPTTA  MA AKGW  L+ P
Sbjct:  270 FPRFFERLNGSQE-LGTFLIYLFFVVIGIPADLRLIVTNAPLILLFVFIIAISNLAVSLAAGKLFRVRLEEILLAVNATVGGPTTAAAMAIAKGWRELVAP 369
The following BLAST results are available for this feature:
BLAST of DN621483 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
YJCL_BACSU1.217e-1441.58Uncharacterized membrane protein yjcL OS=Bacillus ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_06M10_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006M10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621483 ID=DN621483; Name=DN621483; organism=Citrus sinensis; type=EST; length=688bp
TTTTTTTTTTTTTTTTTACAGAAGCAACCTTTGCAAATTCACTTTATCAC
TTATTAAAACATCGGTTACAAATTATTGAATACAATTTGAGAGCGTACTA
CATATATTTGAGTACAGTGACTCCAAAGGCAAGGCCAAGAAAAGTTGCAA
TGGCAATTCCAAAAATACCGGCGAGAATACCAGGAACAATCAAAGAACTC
CAGCCTTTAGCCGTGGCCATTCCGCATGCAGTTGTAGGGCCTCCAACATT
AGCGTTCGATGCTATAAGCAGTAGCTTTTGATCAAAGCGAAATAGCTTTC
CTAATCCGAGGATCACAGCAAGATGAATGGCAATCTGGACAAGAGCAAAC
ATGAAAATGCTAGGTGCTGTGTTTATAACACTCCATATGTTACCGCTTGC
TCCCACCACAGTGAAAAATACCTGCATGAGAATTAGAGCCATAGCTTCAC
CAGCTGGGGCAAGTTTATTGAACTGGGTTGGAAACGTAGTTGCTAAAGTA
ACAACAATAGCTGTTATGGCTGGAAGGCTACCTCCCTGAATACCAAAATA
TTTTGTGAGAAAAGTGCCAGCCTTGCAGATAGCGAAGGCTACAGCAAGGG
CTGTTGCAAACTGTAGCACAGGAGGTTTGTCACCACGGACAGAACCCTCA
TTCATTGAAACATCGTCAACTGAGGTTGAAGACTCTGC
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