DN621478

Overview
NameDN621478
Unique NameDN621478
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig328 contig Csv1_Contig328:481..1160. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN621478 vs. ExPASy Swiss-Prot
Match: ORYA_ORYSJ (Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2)

HSP 1 Score: 240.35 bits (612), Expect = 6.856e-63
Identity = 102/156 (65.38%), Postives = 119/156 (76.28%), Query Frame = -2
Query:  212 GVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASYXXXXXXXXXXXXXXXXXXXXXPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKP 679
            GV AVGYGTENG DYWIV+NSWG SWGE GY+RMERN+  + +GKCGIA+E SY                     P VCDNYY+CP+S TCCC++EYG  C+AWGCCPLE ATCCDDHYSCCPH+YPICNV+ GTCLM+KD+PL V+AL+RT AKP
Sbjct:  290 GVAAVGYGTENGKDYWIVRNSWGKSWGESGYVRMERNIKAS-SGKCGIAVEPSYPLKKGENPPNPGPTPPSPTPPPTVCDNYYTCPDSTTCCCIYEYGKYCYAWGCCPLEGATCCDDHYSCCPHEYPICNVQQGTCLMAKDSPLAVKALKRTLAKP 444          
BLAST of DN621478 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 1.995e-62
Identity = 100/163 (61.35%), Postives = 122/163 (74.85%), Query Frame = -2
Query:  191 GVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASYXXXXXXXXXXXXXXXXXXXXXPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQ 679
            GV AVGYGTENG DYWIV+NSWG SWGE GY+RM RN+A + +GKCGIA+E SY                     P  CD+YY+CPESNTCCC+FEYG  CFAWGCCPLEAATCCDD+YSCCPH+YP+C++  GTCL+SK++P  V+AL+R PA P+W+ G +
Sbjct:  298 GVVAVGYGTENGKDYWIVRNSWGKSWGESGYLRMARNIASS-SGKCGIAIEPSYPIKNGENPPNPGPSPPSPIKPPTQCDSYYTCPESNTCCCLFEYGKYCFAWGCCPLEAATCCDDNYSCCPHEYPVCDLDQGTCLLSKNSPFSVKALKRKPATPFWSQGRK 459          
BLAST of DN621478 vs. ExPASy Swiss-Prot
Match: CYSPL_SOLLC (Low-temperature-induced cysteine proteinase (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 8.400e-53
Identity = 90/164 (54.88%), Postives = 110/164 (67.07%), Query Frame = -2
Query:  188 GVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASYXXXXXXXXXXXXXXXXXXXXXPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQG 679
            GV   GYGTENG DYWIV+NSWG++  E GY+R++RNV+ + +G CG+A+E SY                     P  CD Y  C    TCCC+ ++  SCF+WGCCPLE ATCC+DHYSCCPHDYPICNVR GTC MSK NPLGV+A++R  A+P  A GN G
Sbjct:  179 GVVIAGYGTENGMDYWIVRNSWGANCRENGYLRVQRNVSSS-SGLCGLAIEPSYPVKTGPNPPKPAPSPPSPVKPPTECDEYSQCAVGTTCCCILQFRRSCFSWGCCPLEGATCCEDHYSCCPHDYPICNVRQGTCSMSKGNPLGVKAMKRILAQPIGAFGNGG 341          
BLAST of DN621478 vs. ExPASy Swiss-Prot
Match: ORYB_ORYSJ (Oryzain beta chain OS=Oryza sativa subsp. japonica GN=Os04g0670200 PE=1 SV=2)

HSP 1 Score: 200.675 bits (509), Expect = 6.020e-51
Identity = 92/161 (57.14%), Postives = 106/161 (65.84%), Query Frame = -2
Query:  215 GVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASYXXXXXXXXXXXXXXXXXXXXXPA------VCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAK 679
            GV AVGYGT+NG DYWIV+NSWG  WGE GY+RMERN+  T TGKCGIAM ASY                     P       VCD+ +SCP  +TCCC F + N C  WGCCP+E ATCC DH SCCP DYP+CN RAGTC  SK++PL V+AL+RT AK
Sbjct:  303 GVVAVGYGTDNGKDYWIVRNSWGPKWGESGYVRMERNINVT-TGKCGIAMMASYPTKSGANPPKPSPTPPTPPTPPPPSAPDHVCDDNFSCPAGSTCCCAFGFRNLCLVWGCCPVEGATCCKDHASCCPPDYPVCNTRAGTCSASKNSPLSVKALKRTLAK 462          
BLAST of DN621478 vs. ExPASy Swiss-Prot
Match: CYSP1_ORYSJ (Cysteine protease 1 OS=Oryza sativa subsp. japonica GN=CP1 PE=2 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 1.138e-41
Identity = 80/162 (49.38%), Postives = 92/162 (56.79%), Query Frame = -2
Query:  212 GVTAVGYGTE--NGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASYXXXXXXXXXXXXXXXXXXXXXPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRA----LRRTPAKP 679
            GV AVGYGT+   GA YW V+NSWG  WGE GYIRMERNV    TGKCGIAM ASY                        CD Y  CP   TCCC +   N C  WGCCP+E ATCC DH +CCP +YP+CN +A TC  SK++P  +R      R  P +P
Sbjct:  318 GVVAVGYGTDAATGAAYWTVRNSWGPDWGENGYIRMERNVTAR-TGKCGIAMMASYPIKKGPNPKPSPPSPAPSPPQQ--CDRYSKCPAGTTCCCNYGIRNHCIVWGCCPVEGATCCKDHSTCCPKEYPVCNAKARTCSKSKNSPYNIRTPAAMARSVPEQP 476          
BLAST of DN621478 vs. ExPASy Swiss-Prot
Match: GCP1_ARATH (Germination-specific cysteine protease 1 OS=Arabidopsis thaliana GN=GCP1 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.036e-18
Identity = 40/53 (75.47%), Postives = 46/53 (86.79%), Query Frame = -2
Query:  518 VTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 676
            V AVGYG+ENG DYWIV+NSWG  WGE GYIRMERN+A + +GKCGIA+EASY
Sbjct:  307 VVAVGYGSENGVDYWIVRNSWGPRWGEEGYIRMERNLAASKSGKCGIAVEASY 359          
BLAST of DN621478 vs. ExPASy Swiss-Prot
Match: CYSP4_BRANA (Cysteine proteinase COT44 (Fragment) OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.143e-18
Identity = 41/53 (77.36%), Postives = 47/53 (88.68%), Query Frame = -2
Query:  518 VTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 676
            V AVGYG+ENG DYWIV+NSWG+ WGE GYIRMERNVA + +GKCGIA+EASY
Sbjct:  262 VVAVGYGSENGVDYWIVRNSWGTRWGEDGYIRMERNVA-SKSGKCGIAIEASY 313          
BLAST of DN621478 vs. ExPASy Swiss-Prot
Match: CPR4_ARATH (Probable cysteine proteinase At4g11320 OS=Arabidopsis thaliana GN=At4g11320 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.952e-15
Identity = 37/54 (68.52%), Postives = 41/54 (75.93%), Query Frame = -2
Query:  518 GVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 679
            GV  VGYGTENG DYWIVKNS G +WGE GY++M RN+A    G CGIAM ASY
Sbjct:  305 GVVVVGYGTENGRDYWIVKNSRGDTWGEAGYMKMARNIANP-RGLCGIAMRASY 357          
BLAST of DN621478 vs. ExPASy Swiss-Prot
Match: CPR3_ARATH (Probable cysteine proteinase At4g11310 OS=Arabidopsis thaliana GN=At4g11310 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.023e-14
Identity = 36/54 (66.67%), Postives = 41/54 (75.93%), Query Frame = -2
Query:  518 GVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 679
            GV  VGYGTENG DYW+VKNS G +WGE GY++M RN+A    G CGIAM ASY
Sbjct:  298 GVVVVGYGTENGRDYWLVKNSRGITWGEAGYMKMARNIANP-RGLCGIAMRASY 350          
BLAST of DN621478 vs. ExPASy Swiss-Prot
Match: CYSP_HEMSP (Thiol protease SEN102 OS=Hemerocallis sp. GN=SEN102 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.642e-14
Identity = 37/55 (67.27%), Postives = 41/55 (74.55%), Query Frame = -2
Query:  518 GVTAVGYG-TENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 679
            GV  VGYG T +G  YWIVKNSWG  WGE GYIRM+R ++    GKCGIAMEASY
Sbjct:  290 GVAIVGYGATRDGTKYWIVKNSWGEEWGESGYIRMQRGISDK-RGKCGIAMEASY 343          
The following BLAST results are available for this feature:
BLAST of DN621478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
ORYA_ORYSJ6.856e-6365.38Oryzain alpha chain OS=Oryza sativa subsp. japonic... [more]
RD21A_ARATH1.995e-6261.35Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
CYSPL_SOLLC8.400e-5354.88Low-temperature-induced cysteine proteinase (Fragm... [more]
ORYB_ORYSJ6.020e-5157.14Oryzain beta chain OS=Oryza sativa subsp. japonica... [more]
CYSP1_ORYSJ1.138e-4149.38Cysteine protease 1 OS=Oryza sativa subsp. japonic... [more]
GCP1_ARATH1.036e-1875.47Germination-specific cysteine protease 1 OS=Arabid... [more]
CYSP4_BRANA5.143e-1877.36Cysteine proteinase COT44 (Fragment) OS=Brassica n... [more]
CPR4_ARATH6.952e-1568.52Probable cysteine proteinase At4g11320 OS=Arabidop... [more]
CPR3_ARATH2.023e-1466.67Probable cysteine proteinase At4g11310 OS=Arabidop... [more]
CYSP_HEMSP2.642e-1467.27Thiol protease SEN102 OS=Hemerocallis sp. GN=SEN10... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06M07_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621478 ID=DN621478; Name=DN621478; organism=Citrus sinensis; type=EST; length=680bp
CAAAACCAACGTCCGAATAAATATTTAACAGACCATCCACCTGCCGGTAC
ATTAACGTTTGAAATGAAATGCAGTAAAATGAACTAAGGCCGGGGAGAAA
CTCATTCACAAGCACGAATATCTTCATCCTCCCTTCGGCCTTCCACTGCT
CTTACAGTGCCAACTATAATTAAGCACTGCTACTTCCACCTTGATTTCCA
TGAGCCCAGTAAGGTTTAGCAGGGGTGCGTCGCAATGCCCTCACTCCCAA
TGGGTTGTCCTTGCTCATCAAGCAGGTCCCAGCACGAACATTACAGATGG
GATAGTCATGTGGGCAGCAGCTATAGTGGTCATCACAGCAGGTGGCAGCC
TCAAGCGGGCAGCATCCCCATGCAAAGCAAGAGTTACCATACTCAAAGAC
ACAGCAGCAAGTGTTGCTCTCAGGGCAAGAGTAATAATTGTCACACACAG
CAGGAGGCTTTGTTGGAGATGGAGGAGACGGTCCGGGGTTGGGAGGATTT
TGGCCTTTCTTTATGGGATATGAGGCCTCCATGGCAATTCCACACTTGCC
CGTGAGAGTGCCAGCCACGTTACGCTCCATCCTAATATAGCCACCCTCTC
CCCAGCTACTGCCCCATGAATTCTTCACAATCCAGTAATCAGCTCCATTT
TCTGTGCCATATCCAACAGCAGTAACACCA
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