DN621476

Overview
NameDN621476
Unique NameDN621476
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length572
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7013 contig Csv1_Contig7013:22..593. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN621476 vs. ExPASy Swiss-Prot
Match: RL32_ARATH (60S ribosomal protein L3-2 OS=Arabidopsis thaliana GN=ARP2 PE=2 SV=4)

HSP 1 Score: 299.671 bits (766), Expect = 6.826e-81
Identity = 146/183 (79.78%), Postives = 156/183 (85.25%), Query Frame = 2
Query:   23 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLME 571
            MSHRKFEHPRHGSLGFLPRKRA+RHRGKVKAFPKDDP+KPCRLT+FLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIET          YVKTPRGLRSL TVWAQHLSEE+RRRFYKNW             ++ET+EGKK IQ+QLEK+KKY SV+RVLAHTQIRKMKGLKQKKAHL E
Sbjct:    1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPTKPCRLTSFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPMVVVGVVGYVKTPRGLRSLCTVWAQHLSEELRRRFYKNWAKSKKKAFTRYSKKHETEEGKKDIQSQLEKMKKYCSVIRVLAHTQIRKMKGLKQKKAHLNE 183          
BLAST of DN621476 vs. ExPASy Swiss-Prot
Match: RL31_ARATH (60S ribosomal protein L3-1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=5)

HSP 1 Score: 299.286 bits (765), Expect = 8.915e-81
Identity = 144/183 (78.69%), Postives = 156/183 (85.25%), Query Frame = 2
Query:   23 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLME 571
            MSHRKFEHPRHGSLGFLPRKRA RHRGKVKAFPKDD +KPC+ TAF+GYKAGMTHIVR+VEKPGSKLHKKETCEAVTIIET          YVKTPRGLRSLNTVWAQHLSEEVRRRFYKNW             QY++++GKK IQAQLEK+KKYA+V+RVLAHTQIRKMKGLKQKKAH+ME
Sbjct:    1 MSHRKFEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREVEKPGSKLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWAKSKKKAFTGYAKQYDSEDGKKGIQAQLEKMKKYATVIRVLAHTQIRKMKGLKQKKAHMME 183          
BLAST of DN621476 vs. ExPASy Swiss-Prot
Match: RL3_ORYSJ (60S ribosomal protein L3 OS=Oryza sativa subsp. japonica GN=RPL3 PE=2 SV=2)

HSP 1 Score: 298.13 bits (762), Expect = 1.986e-80
Identity = 143/183 (78.14%), Postives = 156/183 (85.25%), Query Frame = 2
Query:   23 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLME 571
            MSHRKFEHPRHGSLGFLPRKR++RHRGKVK+FPKDD SKPC LT+F+GYKAGMTHIVR+VEKPGSKLHKKETCEAVTIIET          YVKTPRGLRSLN+VWAQHLSEEVRRRFYKNWC            +Y++D GKK IQ QLEK+KKYAS+VRV+AHTQIRKMKGLKQKKAHLME
Sbjct:    1 MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREVEKPGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNWCKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASIVRVIAHTQIRKMKGLKQKKAHLME 183          
BLAST of DN621476 vs. ExPASy Swiss-Prot
Match: RL3B_SCHPO (60S ribosomal protein L3-B OS=Schizosaccharomyces pombe GN=rpl3b PE=2 SV=2)

HSP 1 Score: 242.662 bits (618), Expect = 9.902e-64
Identity = 126/183 (68.85%), Postives = 139/183 (75.96%), Query Frame = 2
Query:   23 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLME 571
            MSH KFE PRHGSLGFLPRKRA+R RGKVKAFPKDD SKP  LTAFLGYKAGMTHIVRD+++PGSK+HK+E  EAVTIIET          YV+TPRGLRSL TVWA+HLSEEV+RRFYKNW             +Y   E  +SI  +LE+IKKY SVVRVLAHTQIRK   L QKKAHLME
Sbjct:    1 MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGSKMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKSKKKAFTKYAKKYA--ESTQSINRELERIKKYCSVVRVLAHTQIRKTP-LAQKKAHLME 180          
BLAST of DN621476 vs. ExPASy Swiss-Prot
Match: RL3A_SCHPO (60S ribosomal protein L3-A OS=Schizosaccharomyces pombe GN=rpl3a PE=1 SV=2)

HSP 1 Score: 242.276 bits (617), Expect = 1.293e-63
Identity = 125/183 (68.31%), Postives = 139/183 (75.96%), Query Frame = 2
Query:   23 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLME 571
            MSH KFE PRHGSLGFLPRKRA+R RGKVKAFPKDD SKP  LTAFLGYKAGMTHIVRD+++PGSK+HK+E  EAVT+IET          YV+TPRGLRSL TVWA+HLSEEV+RRFYKNW             +Y   E  +SI  +LE+IKKY SVVRVLAHTQIRK   L QKKAHLME
Sbjct:    1 MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGSKMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKSKKKAFTKYAKKYA--ESTQSINRELERIKKYCSVVRVLAHTQIRKTP-LAQKKAHLME 180          
BLAST of DN621476 vs. ExPASy Swiss-Prot
Match: RL3_ASPFU (60S ribosomal protein L3 OS=Aspergillus fumigatus GN=rpl3 PE=1 SV=2)

HSP 1 Score: 236.113 bits (601), Expect = 9.268e-62
Identity = 119/183 (65.03%), Postives = 139/183 (75.96%), Query Frame = 2
Query:   23 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLME 571
            MSHRK+E PRHGSL FLPRKRAARHRGKVK+FPKDDP KP  LTA +GYKAGMT +VRD+++PG+K+HKKE  EAVTIIET          Y++TPRGLRSL TVWA+HLS+EV+RRFYKNW             ++  + G  SI  +LE+IKKY +VVRVLAHTQIRK   LKQKKAHLME
Sbjct:    1 MSHRKYEAPRHGSLAFLPRKRAARHRGKVKSFPKDDPKKPVHLTASMGYKAGMTTVVRDLDRPGAKMHKKEIVEAVTIIETPPLVAVGVVGYIETPRGLRSLTTVWAEHLSDEVKRRFYKNWYKSKKKAFTKYAKKHAEENG-ASITRELERIKKYCTVVRVLAHTQIRKTP-LKQKKAHLME 181          
BLAST of DN621476 vs. ExPASy Swiss-Prot
Match: RL3_RAT (60S ribosomal protein L3 OS=Rattus norvegicus GN=Rpl3 PE=1 SV=3)

HSP 1 Score: 231.491 bits (589), Expect = 2.283e-60
Identity = 110/183 (60.11%), Postives = 138/183 (75.41%), Query Frame = 2
Query:   23 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLME 571
            MSHRKF  PRHGSLGFLPRKR++RHRGKVK+FPKDDPSKP  LTAFLGYKAGMTHIVR+V++PGSK++KKE  EAVTI+ET          YV+TPRGLR+  TV+A+H+S+E +RRFYKNW             +++ D GKK ++     +KKY  V+R++AHTQ+R +  L+QKKAHLME
Sbjct:    1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDDTGKKQLEKDFNSMKKYCQVIRIIAHTQMRLLP-LRQKKAHLME 182          
BLAST of DN621476 vs. ExPASy Swiss-Prot
Match: RL3_HUMAN (60S ribosomal protein L3 OS=Homo sapiens GN=RPL3 PE=1 SV=2)

HSP 1 Score: 231.491 bits (589), Expect = 2.283e-60
Identity = 110/183 (60.11%), Postives = 139/183 (75.96%), Query Frame = 2
Query:   23 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLME 571
            MSHRKF  PRHGSLGFLPRKR++RHRGKVK+FPKDDPSKP  LTAFLGYKAGMTHIVR+V++PGSK++KKE  EAVTI+ET          YV+TPRGLR+  TV+A+H+S+E +RRFYKNW             +++ ++GKK ++     +KKY  V+RV+AHTQ+R +  L+QKKAHLME
Sbjct:    1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLP-LRQKKAHLME 182          
BLAST of DN621476 vs. ExPASy Swiss-Prot
Match: RL3_DICDI (60S ribosomal protein L3 OS=Dictyostelium discoideum GN=rpl3 PE=1 SV=2)

HSP 1 Score: 230.335 bits (586), Expect = 5.086e-60
Identity = 116/184 (63.04%), Postives = 138/184 (75.00%), Query Frame = 2
Query:   23 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWC-XXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLME 571
            MSHRKFE PRHG+LGF PRKRAARH+GKVK+FPKDD ++   LTAF+GYKAGMTH+VRD+EKPGSK+HKKE  EAVTIIE           YV+T +GL++  TVWAQHLS+  RRR YKNW              QYET+EGKKSI+A L+ IKK  SVVRV+AHTQ+ K+K L QKKAH++E
Sbjct:    1 MSHRKFEAPRHGNLGFRPRKRAARHQGKVKSFPKDDRTQKVHLTAFMGYKAGMTHVVRDLEKPGSKMHKKEIVEAVTIIECPPMYIVGLVGYVETAQGLKTYKTVWAQHLSDNFRRRLYKNWYKSKSKKAFTKYVKQYETEEGKKSIEASLQAIKKRCSVVRVIAHTQVHKLK-LTQKKAHVLE 183          
BLAST of DN621476 vs. ExPASy Swiss-Prot
Match: RL3_NEUCR (60S ribosomal protein L3 OS=Neurospora crassa GN=rpl-3 PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.133e-59
Identity = 116/183 (63.39%), Postives = 137/183 (74.86%), Query Frame = 2
Query:   23 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLME 571
            MSHRK+E PRHGSL +LPRKRAARHRGKVK+FPKDD  KP  LTA +GYKAGMT IVRD+++PG+K HKKE  EAVTII+T          Y++TPRGLRSL TVWA+HLS+EV+RRFYKNW             ++  + G  +I  +LE+IKKY +VVRVLAHTQIRK   LKQKKAHLME
Sbjct:    1 MSHRKYEAPRHGSLAYLPRKRAARHRGKVKSFPKDDAKKPVHLTAAMGYKAGMTTIVRDLDRPGAKAHKKEVVEAVTIIDTPPMIVVGLVGYIETPRGLRSLTTVWAEHLSDEVKRRFYKNWYKSKKKAFTKYVKKHSDNNG-AAITRELERIKKYCTVVRVLAHTQIRKTP-LKQKKAHLME 181          
The following BLAST results are available for this feature:
BLAST of DN621476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
RL32_ARATH6.826e-8179.7860S ribosomal protein L3-2 OS=Arabidopsis thaliana... [more]
RL31_ARATH8.915e-8178.6960S ribosomal protein L3-1 OS=Arabidopsis thaliana... [more]
RL3_ORYSJ1.986e-8078.1460S ribosomal protein L3 OS=Oryza sativa subsp. ja... [more]
RL3B_SCHPO9.902e-6468.8560S ribosomal protein L3-B OS=Schizosaccharomyces ... [more]
RL3A_SCHPO1.293e-6368.3160S ribosomal protein L3-A OS=Schizosaccharomyces ... [more]
RL3_ASPFU9.268e-6265.0360S ribosomal protein L3 OS=Aspergillus fumigatus ... [more]
RL3_RAT2.283e-6060.1160S ribosomal protein L3 OS=Rattus norvegicus GN=R... [more]
RL3_HUMAN2.283e-6060.1160S ribosomal protein L3 OS=Homo sapiens GN=RPL3 P... [more]
RL3_DICDI5.086e-6063.0460S ribosomal protein L3 OS=Dictyostelium discoide... [more]
RL3_NEUCR1.133e-5963.3960S ribosomal protein L3 OS=Neurospora crassa GN=r... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06M06_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621476 ID=DN621476; Name=DN621476; organism=Citrus sinensis; type=EST; length=572bp
CGCAGCAGCTCAGAGGAGGAGAATGTCTCACAGGAAGTTTGAGCACCCAA
GGCATGGTTCCCTTGGATTTCTTCCAAGGAAGCGAGCTGCTCGTCACAGA
GGAAAGGTGAAGGCTTTTCCCAAGGATGACCCAAGCAAGCCTTGCAGGCT
CACTGCCTTTTTGGGTTACAAGGCTGGGATGACCCACATTGTTAGGGATG
TCGAGAAACCTGGATCTAAGCTTCACAAGAAGGAGACCTGTGAGGCTGTT
ACCATTATTGAAACCCCTCCAATGATGGTGGTTGGAGTTGTGGGATATGT
GAAGACACCTCGTGGTCTTCGCTCTTTGAACACTGTATGGGCTCAGCATC
TTAGTGAGGAGGTGAGAAGAAGGTTCTACAAGAACTGGTGCAAATCCAAG
AAGAAGGCTTTCACAAAATACTCAAAGCAGTATGAAACAGATGAAGGGAA
GAAAAGTATCCAAGCTCAGCTGGAGAAGATCAAGAAGTATGCATCTGTTG
TTCGTGTTCTTGCTCACACTCAGATTAGGAAAATGAAGGGTTTGAAGCAG
AAGAAGGCACACCTGATGGAAA
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