DN621458

Overview
NameDN621458
Unique NameDN621458
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6051 contig Csv1_Contig6051:1..751. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN621458 vs. ExPASy Swiss-Prot
Match: EI2BB_DICDI (Translation initiation factor eIF-2B subunit beta OS=Dictyostelium discoideum GN=eif2b2 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.586e-20
Identity = 55/90 (61.11%), Postives = 64/90 (71.11%), Query Frame = 1
Query:  472 SEVILTLGSSRTVLEFLFAAKEKKRSFRVFVAEGAPRYQGHLLAKELVARGLQTTLITDSAVFAMISRVNMVIVGAHAVMANGGVIAPVG 741
            +E I+TLG SRTV EFL  A  +KRSF+V V E AP  +G   A  L    + TTLITDSAVFAM+SRVN VI+G HAVMANGG+IA  G
Sbjct:  197 NETIMTLGCSRTVEEFLKEAA-RKRSFKVIVVETAPSLEGQKTAISLSKASIDTTLITDSAVFAMMSRVNKVIIGTHAVMANGGLIATSG 285          
BLAST of DN621458 vs. ExPASy Swiss-Prot
Match: EI2BB_TAKRU (Translation initiation factor eIF-2B subunit beta OS=Takifugu rubripes GN=eif2b2 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.902e-17
Identity = 48/90 (53.33%), Postives = 63/90 (70.00%), Query Frame = 1
Query:  472 SEVILTLGSSRTVLEFLFAAKEKKRSFRVFVAEGAPRYQGHLLAKELVARGLQTTLITDSAVFAMISRVNMVIVGAHAVMANGGVIAPVG 741
            +EVI+T+G SRTV  FL  A  +KR F V VAE AP  QGH +A  L   G++TT+I D+A+FA++SRVN VI+G   V+ANGG+ A  G
Sbjct:  166 NEVIMTVGRSRTVEAFLKDAA-RKRKFHVIVAECAPFCQGHKMATSLSTAGIETTVIADAAIFAVMSRVNKVIIGTQTVLANGGLRAVNG 254          
BLAST of DN621458 vs. ExPASy Swiss-Prot
Match: EI2BB_SCHPO (Probable translation initiation factor eIF-2B subunit beta OS=Schizosaccharomyces pombe GN=tif222 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.902e-17
Identity = 49/96 (51.04%), Postives = 65/96 (67.71%), Query Frame = 1
Query:  472 SEVILTLGSSRTVLEFL-FAAKEKKRSFRVFVAEGAPRYQ--GHLLAKELVARGLQTTLITDSAVFAMISRVNMVIVGAHAVMANGGVIAPVGMNL 750
            +E+ILT G S+TV  FL FAAK  KR F V VAEG P  Q   H +AK L   G+ TT+I+D+ +FA++SRVN VI+G HA++ NGG++   G  L
Sbjct:  202 NEIILTQGCSKTVEAFLRFAAK--KRKFSVIVAEGFPNNQKGSHAMAKRLAQAGIDTTVISDATIFAIMSRVNKVILGTHAILGNGGLVTYSGAQL 295          
BLAST of DN621458 vs. ExPASy Swiss-Prot
Match: EI2BB_MOUSE (Translation initiation factor eIF-2B subunit beta OS=Mus musculus GN=Eif2b2 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.590e-16
Identity = 46/90 (51.11%), Postives = 63/90 (70.00%), Query Frame = 1
Query:  472 SEVILTLGSSRTVLEFLFAAKEKKRSFRVFVAEGAPRYQGHLLAKELVARGLQTTLITDSAVFAMISRVNMVIVGAHAVMANGGVIAPVG 741
            +EVI+T+G SRTV  FL  A  +KR F V VAE AP  QGH +A  L   G++TT++TD+A+FA++SRVN VI+G   ++ANG + A  G
Sbjct:  162 NEVIMTIGYSRTVEAFLKEAA-RKRKFHVIVAECAPFCQGHEMAVNLSKEGIETTVMTDAAIFAVMSRVNKVIIGTKTILANGSLRAVAG 250          
BLAST of DN621458 vs. ExPASy Swiss-Prot
Match: EI2BB_RABIT (Translation initiation factor eIF-2B subunit beta OS=Oryctolagus cuniculus GN=EIF2B2 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.383e-16
Identity = 46/90 (51.11%), Postives = 63/90 (70.00%), Query Frame = 1
Query:  472 SEVILTLGSSRTVLEFLFAAKEKKRSFRVFVAEGAPRYQGHLLAKELVARGLQTTLITDSAVFAMISRVNMVIVGAHAVMANGGVIAPVG 741
            +EVI+T+G SRTV  FL  A  +KR F V VAE AP  QGH +A  L   G++TT++TD+A+FA++SRVN VI+G   ++ANG + A  G
Sbjct:  162 NEVIMTIGLSRTVEAFLREAA-RKRKFHVIVAECAPFCQGHEMAVNLSKAGIETTVMTDAAIFAVMSRVNKVIIGTKTILANGALRAVTG 250          
BLAST of DN621458 vs. ExPASy Swiss-Prot
Match: EI2BB_HUMAN (Translation initiation factor eIF-2B subunit beta OS=Homo sapiens GN=EIF2B2 PE=1 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 3.383e-16
Identity = 46/90 (51.11%), Postives = 63/90 (70.00%), Query Frame = 1
Query:  472 SEVILTLGSSRTVLEFLFAAKEKKRSFRVFVAEGAPRYQGHLLAKELVARGLQTTLITDSAVFAMISRVNMVIVGAHAVMANGGVIAPVG 741
            +EVI+T+G SRTV  FL  A  +KR F V VAE AP  QGH +A  L   G++TT++TD+A+FA++SRVN VI+G   ++ANG + A  G
Sbjct:  162 NEVIMTIGFSRTVEAFLKEAA-RKRKFHVIVAECAPFCQGHEMAVNLSKAGIETTVMTDAAIFAVMSRVNKVIIGTKTILANGALRAVTG 250          
BLAST of DN621458 vs. ExPASy Swiss-Prot
Match: EI2BB_BOVIN (Translation initiation factor eIF-2B subunit beta OS=Bos taurus GN=EIF2B2 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.383e-16
Identity = 46/90 (51.11%), Postives = 63/90 (70.00%), Query Frame = 1
Query:  472 SEVILTLGSSRTVLEFLFAAKEKKRSFRVFVAEGAPRYQGHLLAKELVARGLQTTLITDSAVFAMISRVNMVIVGAHAVMANGGVIAPVG 741
            +EVI+T+G SRTV  FL  A  +KR F V VAE AP  QGH +A  L   G++TT++TD+A+FA++SRVN VI+G   ++ANG + A  G
Sbjct:  162 NEVIMTIGFSRTVEAFLREAA-RKRKFHVIVAECAPFCQGHEMAVNLSKAGIETTVMTDAAIFAVMSRVNKVIIGTKTILANGALRAVAG 250          
BLAST of DN621458 vs. ExPASy Swiss-Prot
Match: EI2BB_RAT (Translation initiation factor eIF-2B subunit beta OS=Rattus norvegicus GN=Eif2b2 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.842e-16
Identity = 45/90 (50.00%), Postives = 62/90 (68.89%), Query Frame = 1
Query:  472 SEVILTLGSSRTVLEFLFAAKEKKRSFRVFVAEGAPRYQGHLLAKELVARGLQTTLITDSAVFAMISRVNMVIVGAHAVMANGGVIAPVG 741
            +EVI+T+G SRTV  FL  A +K R F V  AE AP  QGH +A  L   G++TT++TD+A+FA++SRVN VI+G   ++ANG + A  G
Sbjct:  162 NEVIMTIGFSRTVEAFLREAAQK-RKFHVIAAECAPFCQGHEMAVNLSEAGIETTVMTDAAIFAVMSRVNKVIIGTKTILANGSLRAVAG 250          
BLAST of DN621458 vs. ExPASy Swiss-Prot
Match: EI2BB_YEAST (Translation initiation factor eIF-2B subunit beta OS=Saccharomyces cerevisiae GN=GCD7 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.055e-12
Identity = 41/90 (45.56%), Postives = 57/90 (63.33%), Query Frame = 1
Query:  475 EVILT-LGSSRTVLEFLFAAKEKK-RSFRVFVAEGAPRY--QGHLLAKELVARGLQTTLITDSAVFAMISRVNMVIVGAHAVMANGGVIA 732
            E++LT    S+TVL+FL  A+E+  R+F V V EG P      H  AK+L    ++T ++ DSAVFA++SRV  VI+G  AV  NGG I+
Sbjct:  184 EILLTPTPDSKTVLKFLITARERSNRTFTVLVTEGFPNNTKNAHEFAKKLAQHNIETLVVPDSAVFALMSRVGKVIIGTKAVFVNGGTIS 273          
The following BLAST results are available for this feature:
BLAST of DN621458 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
EI2BB_DICDI6.586e-2061.11Translation initiation factor eIF-2B subunit beta ... [more]
EI2BB_TAKRU8.902e-1753.33Translation initiation factor eIF-2B subunit beta ... [more]
EI2BB_SCHPO8.902e-1751.04Probable translation initiation factor eIF-2B subu... [more]
EI2BB_MOUSE2.590e-1651.11Translation initiation factor eIF-2B subunit beta ... [more]
EI2BB_RABIT3.383e-1651.11Translation initiation factor eIF-2B subunit beta ... [more]
EI2BB_HUMAN3.383e-1651.11Translation initiation factor eIF-2B subunit beta ... [more]
EI2BB_BOVIN3.383e-1651.11Translation initiation factor eIF-2B subunit beta ... [more]
EI2BB_RAT9.842e-1650.00Translation initiation factor eIF-2B subunit beta ... [more]
EI2BB_YEAST5.055e-1245.56Translation initiation factor eIF-2B subunit beta ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_06L21_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006L21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621458 ID=DN621458; Name=DN621458; organism=Citrus sinensis; type=EST; length=751bp
GTTCCTCAGACTTCCTCTATCTGGGGGTGATTCTGAAGGAAAAAGCAAAT
CTGCTGATAAAAGTTCAAGAAGTCGGAAGCTGAAGCATGATGTTATTGAA
GCGGTTAATGAACAGATTGCTGATATTGTCATTTGCCATGAACAGATTGC
TGAACAAGCAGTGGAGCATATACATCAGAAGAATTGTAGGATGATAATTT
CATGTATCGATGATGAACTGGTCCACTAAGTTTCCGCTACAATCCCGAGT
TGCCACTTGTTGGCGTGCTCATCCCTGACCTATGGTTCCACCTTTCTTCG
GATGCTGCTTCCATATCATCTGCTAGTTGCTGCCAATCTCGTTCGACTAC
ATTGTCTGGTTGGGGCCATTCTTGAAGGTCTAGCCATTCGGCCATTTCTT
CAAGCTCGTTCCTCCATCTATCAATATCTGGAGTATCCAAATAATTGACC
TCTCTTGGCCCATGCCTGATAAGTGAGGTAATATTAACTTTAGGCAGTTC
AAGGACGGTGTTGGAATTTCTTTTTGCTGCAAAGGAGAAAAAAAGATCAT
TCCGGGTATTTGTTGCAGAGGGTGCTCCAAGGTATCAGGGGCATCTGCTT
GCAAAAGAATTGGTAGCAAGAGGTTTACAGACCACACTGATTACTGATTC
TGCAGTTTTTGCCATGATTTCCCGAGTAAACATGGTTATAGTTGGAGCTC
ATGCTGTCATGGCCAATGGTGGGGTTATAGCACCTGTTGGGATGAATTTG
G
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