DN621457

Overview
NameDN621457
Unique NameDN621457
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length629
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2169 contig Csv1_Contig2169:1117..1745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN621457 vs. ExPASy Swiss-Prot
Match: EF1A_ORYSJ (Elongation factor 1-alpha OS=Oryza sativa subsp. japonica GN=REFA1 PE=2 SV=2)

HSP 1 Score: 194.126 bits (492), Expect = 4.857e-49
Identity = 94/97 (96.91%), Postives = 97/97 (100.00%), Query Frame = -2 
Query:  338 QIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 628
            QIGNGYAPVLDCHTSHIAVKF+ELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFS+YPPLGRFAVRDMRQTVAVGVIK+VEKKDPTG
Sbjct:  340 QIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG 436
[Close]
BLAST of DN621457 vs. ExPASy Swiss-Prot
Match: EF1A_MAIZE (Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 4.857e-49
Identity = 94/97 (96.91%), Postives = 96/97 (98.97%), Query Frame = -2 
Query:  338 QIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 628
            QIGNGYAPVLDCHTSHIAVKF+ELVTKIDRRSGKELEKEPKFLKNGDAGMVKM+PTKPMVVETFS YPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG
Sbjct:  340 QIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMVPTKPMVVETFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 436
[Close]
BLAST of DN621457 vs. ExPASy Swiss-Prot
Match: EF1A_VICFA (Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.082e-48
Identity = 92/97 (94.85%), Postives = 97/97 (100.00%), Query Frame = -2 
Query:  338 QIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 628
            QIGNGYAPVLDCHTSHIAVKF+EL+TKIDRRSGKE+EKEPKFLKNGDAGMVKMIPTKPMVVETF++YPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG
Sbjct:  340 QIGNGYAPVLDCHTSHIAVKFAELITKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 436
[Close]
BLAST of DN621457 vs. ExPASy Swiss-Prot
Match: EF1A_PEA (Elongation factor 1-alpha OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.082e-48
Identity = 92/97 (94.85%), Postives = 97/97 (100.00%), Query Frame = -2 
Query:  338 QIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 628
            QIGNGYAPVLDCHTSHIAVKF+EL+TKIDRRSGKE+EKEPKFLKNGDAGMVKMIPTKPMVVETF++YPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG
Sbjct:  340 QIGNGYAPVLDCHTSHIAVKFAELITKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 436
[Close]
BLAST of DN621457 vs. ExPASy Swiss-Prot
Match: EF1A_SOYBN (Elongation factor 1-alpha OS=Glycine max GN=TEFS1 PE=3 SV=2)

HSP 1 Score: 191.045 bits (484), Expect = 4.111e-48
Identity = 92/97 (94.85%), Postives = 96/97 (98.97%), Query Frame = -2 
Query:  338 QIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 628
            QIGNGYAPVLDCHTSHIAVKF+EL+TKIDRRSGKELEKEPKFLKNGDAG VKMIPTKPMVVETFS+YPPLGRFAVRDMRQTVAVGVIK+VEKKDPTG
Sbjct:  340 QIGNGYAPVLDCHTSHIAVKFAELMTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG 436
[Close]
BLAST of DN621457 vs. ExPASy Swiss-Prot
Match: EF1A_ARATH (Elongation factor 1-alpha OS=Arabidopsis thaliana GN=A1 PE=1 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 5.370e-48
Identity = 91/97 (93.81%), Postives = 96/97 (98.97%), Query Frame = -2 
Query:  338 QIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 628
            QIGNGYAPVLDCHTSHIAVKFSE++TKIDRRSGKE+EKEPKFLKNGDAGMVKM PTKPMVVETFS+YPPLGRFAVRDMRQTVAVGVIKSV+KKDPTG
Sbjct:  340 QIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPTG 436
[Close]
BLAST of DN621457 vs. ExPASy Swiss-Prot
Match: EF1A_TOBAC (Elongation factor 1-alpha OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 7.013e-48
Identity = 90/97 (92.78%), Postives = 97/97 (100.00%), Query Frame = -2 
Query:  338 QIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 628
            QIGNGYAPVLDCHTSHIAVKF+E++TKIDRRSGKE+EKEPKFLKNGDAGMVKMIPTKPMVVETFS+YPPLGRFAVRDMRQTVAVGVIK+V+KKDPTG
Sbjct:  340 QIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVDKKDPTG 436
[Close]
BLAST of DN621457 vs. ExPASy Swiss-Prot
Match: EF1A_SOLLC (Elongation factor 1-alpha OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.196e-47
Identity = 89/97 (91.75%), Postives = 97/97 (100.00%), Query Frame = -2 
Query:  338 QIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 628
            QIGNGYAPVLDCHTSHIAVKF+E++TKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETF++YPPLGRFAVRDMRQTVAVGV+K+V+KKDPTG
Sbjct:  340 QIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVVKNVDKKDPTG 436
[Close]
BLAST of DN621457 vs. ExPASy Swiss-Prot
Match: EF1A_MANES (Elongation factor 1-alpha OS=Manihot esculenta GN=EF1 PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.665e-47
Identity = 91/97 (93.81%), Postives = 95/97 (97.94%), Query Frame = -2 
Query:  338 QIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 628
            QIGNGYAPVLDCHTSHIAVKF+E++TKIDRRSGKELEKEPKFLKNGDAG VKMIPTKPMVVETFS YPPLGRFAVRDMRQTVAVGVIKSVEKKDP+G
Sbjct:  340 QIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSAYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSG 436
[Close]
BLAST of DN621457 vs. ExPASy Swiss-Prot
Match: EF1A2_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 4.546e-47
Identity = 91/97 (93.81%), Postives = 93/97 (95.88%), Query Frame = -2 
Query:  338 QIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 628
            QIGNGYAPVLDCHTSHIAVKF+E+ TKIDRRSGKELEKEPKFLKNGDAG VKMIPTKPMVVETF  YPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG
Sbjct:  340 QIGNGYAPVLDCHTSHIAVKFAEIQTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFMSYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 436
The following BLAST results are available for this feature:
BLAST of DN621457 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
EF1A_ORYSJ4.857e-4996.91Elongation factor 1-alpha OS=Oryza sativa subsp. j... [more]
EF1A_MAIZE4.857e-4996.91Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3... [more]
EF1A_VICFA1.082e-4894.85Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1[more]
EF1A_PEA1.082e-4894.85Elongation factor 1-alpha OS=Pisum sativum PE=2 SV... [more]
EF1A_SOYBN4.111e-4894.85Elongation factor 1-alpha OS=Glycine max GN=TEFS1 ... [more]
EF1A_ARATH5.370e-4893.81Elongation factor 1-alpha OS=Arabidopsis thaliana ... [more]
EF1A_TOBAC7.013e-4892.78Elongation factor 1-alpha OS=Nicotiana tabacum PE=... [more]
EF1A_SOLLC1.196e-4791.75Elongation factor 1-alpha OS=Solanum lycopersicum ... [more]
EF1A_MANES2.665e-4793.81Elongation factor 1-alpha OS=Manihot esculenta GN=... [more]
EF1A2_DAUCA4.546e-4793.81Elongation factor 1-alpha OS=Daucus carota PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06L20_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006L20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621457 ID=DN621457; Name=DN621457; organism=Citrus sinensis; type=EST; length=629bp
TAATCAAAGAGCTTAAAATGAGCTTCCAAATGTATTAAAACCACCAACTT
TGACATCCAGCAGCTGGTCTATAAACTTCACAACTCAATTTAGTGCTATT
AACCAAATTCAGAATATAAAAATCCGAACACCCACCACAGCCAGTTAAGC
AGAAAGATAACATCCCAATTGCTCAACAGCAAACTGGTGGAAGCAAATAG
GGCTGTTTGCAGAAACATTGATGCAAAACAAAAACAGACAAGAAAATAAA
AAAAGACAGAAAATAAACCCTAACTATTGTAGACAGACCCATAAAAATTT
CTCATTTCTTCTTGGCTGCGGACTTGGTGACCTTCGCACCTGTGGGATCC
TTCTTCTCAACACTCTTGATAACACCCACAGCAACAGTCTGACGCATGTC
CCTAACAGCAAAACGACCAAGGGGTGGGTAATCGGAGAAGGTTTCAACAA
CCATGGGCTTGGTGGGAATCATCTTAACCATTCCGGCGTCTCCATTCTTC
AAGAACTTGGGCTCCTTCTCAAGCTCCTTGCCTGATCGCCTATCAATCTT
CGTCACGAGCTCAGAAAACTTGACGGCAATGTGGGAGGTGTGGCAGTCAA
GCACTGGGGCATATCCATTTCCAATCTGG
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