FC922062

Overview
NameFC922062
Unique NameFC922062
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length734
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC922062 vs. ExPASy Swiss-Prot
Match: SCAM3_ARATH (Secretory carrier-associated membrane protein 3 OS=Arabidopsis thaliana GN=SCAMP3 PE=1 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 2.787e-68
Identity = 129/208 (62.02%), Postives = 145/208 (69.71%), Query Frame = 3
Query:  114 MAGRYDSNPF-DEEEVNPFSDPAVRXXXXXXXXXXXXXXXTTNSASVPPATNSRLSPLPHEPAGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRT 734
            MA RYD NPF +EEEVNPF+                      N+  VPPA+NSRLSPLP EP GF++ R   I +                      +RREQD++RKE+AAARAGIV+E KNWPPFFP+IHHDIANEIP+HLQRLQYV FATYLGL LCL WNI+AVTTAWIKGEGV IW LA+IYFIAGVPG YVLWYRPLYRAFRT
Sbjct:    1 MANRYDPNPFAEEEEVNPFA----------------------NARGVPPASNSRLSPLPPEPVGFDYGRTVDIPLDRAGTQDLKKKEKELQAKEAELKRREQDLKRKEDAAARAGIVIEVKNWPPFFPLIHHDIANEIPVHLQRLQYVTFATYLGLVLCLFWNIIAVTTAWIKGEGVTIWLLALIYFIAGVPGGYVLWYRPLYRAFRT 186          
BLAST of FC922062 vs. ExPASy Swiss-Prot
Match: SCAM_PEA (Secretory carrier-associated membrane protein OS=Pisum sativum GN=PSAM2 PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 3.767e-65
Identity = 126/207 (60.87%), Postives = 140/207 (67.63%), Query Frame = 3
Query:  114 MAGRYDSNPFDEEEVNPFSDPAVRXXXXXXXXXXXXXXXTTNSASVPPATNSRLSPLPHEPAGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRT 734
            MAGRYD NPFDEE+VNPFS+P                       S   ATNSR +PL  + A +N+     +DIP                     R+REQ+VRRKEEA ARAGIV+EEKNWPPFFPIIHHDI NEIPIHL+ LQYVAF + LGL LCL WN+V+VT AWIKGEGVKIWFLAIIYFIAGVPGAY LWYRPLYRAFRT
Sbjct:    1 MAGRYDPNPFDEEQVNPFSNPR----------------------SAASATNSRPAPLNPDRADYNYGFGPTVDIPLDTSTDGKKKERDLQAKEAELRKREQEVRRKEEAIARAGIVIEEKNWPPFFPIIHHDITNEIPIHLRTLQYVAFFSLLGLVLCLTWNVVSVTAAWIKGEGVKIWFLAIIYFIAGVPGAYALWYRPLYRAFRT 185          
BLAST of FC922062 vs. ExPASy Swiss-Prot
Match: SCAM5_ARATH (Secretory carrier-associated membrane protein 5 OS=Arabidopsis thaliana GN=SCAMP5 PE=2 SV=2)

HSP 1 Score: 246.128 bits (627), Expect = 1.431e-64
Identity = 126/210 (60.00%), Postives = 144/210 (68.57%), Query Frame = 3
Query:  114 MAGRYDSNPFDEE-EVNPFSDPAVRXXXXXXXXXXXXXXXTTNSASVPPATNSRLSPLPHEPAGFNFER--DAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRT 734
            M GRYD N FDE+ EVNPF++P                       SVP A+NSRLSPLP EPAGF + R  D P+D P                     RRREQD++RK++AAARAGIV+E KNWP FFP+IHHDIANEI + LQRLQY+AFATYLGL L L WNI+AVTTAWIKGEGV IW LA+IYFI+GVPG YVLWYRPLYRAFR+
Sbjct:    1 MGGRYDRNTFDEQDEVNPFANPG----------------------SVPAASNSRLSPLPPEPAGFGYGRTVDIPLDRPGSGAQDLKKKEKELQAKEADLRRREQDLKRKQDAAARAGIVIEAKNWPTFFPLIHHDIANEILVRLQRLQYIAFATYLGLVLALFWNIIAVTTAWIKGEGVTIWLLAVIYFISGVPGGYVLWYRPLYRAFRS 188          
BLAST of FC922062 vs. ExPASy Swiss-Prot
Match: SCAM2_ORYSJ (Secretory carrier-associated membrane protein 2 OS=Oryza sativa subsp. japonica GN=SCAMP2 PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.869e-64
Identity = 121/207 (58.45%), Postives = 141/207 (68.12%), Query Frame = 3
Query:  114 MAGRYDSNPFDEEEVNPFSDPAVRXXXXXXXXXXXXXXXTTNSASVPPATNSRLSPLPHEPAGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRT 734
            MAGRYD NPFDE++VNPF+                         SVPPA+NSR+ PLPHEP GF  +R A +DIP                      +RE ++RR+EEAA+RAGIV+EEKNWPPFFPIIHHDI+NEIPIHLQR+QY+AF++ LGL  CL WNI+A T AWIKG GV IW LAIIYFI+GVPGAYVLWYRPLY A RT
Sbjct:    1 MAGRYDRNPFDEDDVNPFA-----------------------GGSVPPASNSRMPPLPHEP-GFYNDRGATVDIPLDSTKDMKKKEKELQAKEAELNKRESELRRREEAASRAGIVIEEKNWPPFFPIIHHDISNEIPIHLQRMQYLAFSSLLGLAACLFWNIIATTAAWIKGAGVMIWLLAIIYFISGVPGAYVLWYRPLYNAMRT 183          
BLAST of FC922062 vs. ExPASy Swiss-Prot
Match: SCAM1_ORYSJ (Secretory carrier-associated membrane protein 1 OS=Oryza sativa subsp. japonica GN=SCAMP1 PE=2 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.441e-64
Identity = 122/208 (58.65%), Postives = 146/208 (70.19%), Query Frame = 3
Query:  114 MAGRYDSNPFDEEEVNPFSDPAVRXXXXXXXXXXXXXXXTTNSASVPP-ATNSRLSPLPHEPAGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRT 734
            MAGRYDSNPF+E++VNPFS+ A R                 N  +VP  ++NSRLSPLP EPA F     A +DIP                      +RE++++R+EEAAARAGIV+EEKNWPPF P+IHHDI NEIP HLQR+QYVAFA++LGL  CL WN++AVT+AW+KGEGVKIW LAIIYFI+GVPGAYVLWYRPLY A RT
Sbjct:    1 MAGRYDSNPFEEDDVNPFSEQA-RGKAGGQPSYGGGAFYMPNPRNVPSVSSNSRLSPLPPEPAAFG----ATVDIPLDSSKDLKNREKELQAREAELNKREKELKRREEAAARAGIVIEEKNWPPFLPLIHHDITNEIPSHLQRMQYVAFASFLGLACCLFWNVIAVTSAWVKGEGVKIWLLAIIYFISGVPGAYVLWYRPLYNAMRT 203          
BLAST of FC922062 vs. ExPASy Swiss-Prot
Match: SCAM1_ORYSI (Putative secretory carrier-associated membrane protein 1 OS=Oryza sativa subsp. indica GN=SCAMP1 PE=3 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.441e-64
Identity = 122/208 (58.65%), Postives = 146/208 (70.19%), Query Frame = 3
Query:  114 MAGRYDSNPFDEEEVNPFSDPAVRXXXXXXXXXXXXXXXTTNSASVPP-ATNSRLSPLPHEPAGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRT 734
            MAGRYDSNPF+E++VNPFS+ A R                 N  +VP  ++NSRLSPLP EPA F     A +DIP                      +RE++++R+EEAAARAGIV+EEKNWPPF P+IHHDI NEIP HLQR+QYVAFA++LGL  CL WN++AVT+AW+KGEGVKIW LAIIYFI+GVPGAYVLWYRPLY A RT
Sbjct:    1 MAGRYDSNPFEEDDVNPFSEQA-RGKAGGQPSYGGGAFYMPNPRNVPSMSSNSRLSPLPPEPAAFG----ATVDIPLDSSKDLKNREKELQAREAELNKREKELKRREEAAARAGIVIEEKNWPPFLPLIHHDITNEIPSHLQRMQYVAFASFLGLACCLFWNVIAVTSAWVKGEGVKIWLLAIIYFISGVPGAYVLWYRPLYNAMRT 203          
BLAST of FC922062 vs. ExPASy Swiss-Prot
Match: SCAM4_ORYSJ (Secretory carrier-associated membrane protein 4 OS=Oryza sativa subsp. japonica GN=SCAMP4 PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 5.629e-61
Identity = 124/212 (58.49%), Postives = 142/212 (66.98%), Query Frame = 3
Query:  114 MAGR--YDSNPFDE---EEVNPFSDPAVRXXXXXXXXXXXXXXXTTNSA-SVPPATNSRLSPLPHEPAGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFR 731
            MAGR  YD NPF+E   +EVNPF+D A +               TT S  S PPAT+  LSPLP EPA F  +   P+DIP                      RRE++++R+EEAAARAGIVLE+KNWPPFFPIIH+DI NEIP+HLQR QYVAFA+ LGL LCL WNI+ VT AWIKGEG KIWFLA+IYFI G PGAY LWYRPLYRA R
Sbjct:    1 MAGRSRYD-NPFEEGGGDEVNPFADKASKGGSAGQSSYSGGAFYTTQSRPSAPPATH--LSPLPPEPADFYNDFSTPVDIPMDTSKDMKTREKELLAKEAELNRREKEIKRREEAAARAGIVLEDKNWPPFFPIIHNDIGNEIPVHLQRTQYVAFASLLGLVLCLFWNIICVTAAWIKGEGPKIWFLAVIYFILGCPGAYYLWYRPLYRAMR 209          
BLAST of FC922062 vs. ExPASy Swiss-Prot
Match: SCAM1_ARATH (Secretory carrier-associated membrane protein 1 OS=Arabidopsis thaliana GN=SCAMP1 PE=1 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.254e-60
Identity = 118/204 (57.84%), Postives = 141/204 (69.12%), Query Frame = 3
Query:  123 RYDSNPFDEEEVNPFSDPAVRXXXXXXXXXXXXXXXTTNSASVPPATNSRLSPLPHEPAGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRT 734
            RY S+ FD+ E+NPF++P                       SVP AT S+LSPLP EP    ++R A +DIP                     +RREQ+++RKE+A A+AGIV+EEKNWPPFFP+IHHDI+NEIPIHLQR+QYVAF + LGL +CLLWNIVAVTTAWIKGEG  IWFLAIIYFI+GVPGAYV+WYRPLYRA RT
Sbjct:    3 RYQSHSFDDGEINPFANPT----------------------SVPAAT-SKLSPLPPEP----YDRGATMDIPLDSGKDLKAKEKELREKEAELKRREQEIKRKEDAIAQAGIVIEEKNWPPFFPLIHHDISNEIPIHLQRIQYVAFTSMLGLVVCLLWNIVAVTTAWIKGEGPTIWFLAIIYFISGVPGAYVMWYRPLYRAMRT 179          
BLAST of FC922062 vs. ExPASy Swiss-Prot
Match: SCAM2_ARATH (Secretory carrier-associated membrane protein 2 OS=Arabidopsis thaliana GN=SCAMP2 PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 6.880e-59
Identity = 113/204 (55.39%), Postives = 135/204 (66.18%), Query Frame = 3
Query:  123 RYDSNPFDEEEVNPFSDPAVRXXXXXXXXXXXXXXXTTNSASVPPATNSRLSPLPHEPAGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRT 734
            R+D NPF +EE+NPF+                      N  SVPPA+NS L PLP EP    ++R A +DIP                     +R+EQ+++R+E+A AR G+V+EEKNWP FFP+IHHDI NEIPIHLQ++QYVAF T LGL  CLLWNIVAVT AWIKGEG  IW L+IIYF+AGVPGAYVLWYRPLYRA RT
Sbjct:    3 RHDPNPFADEEINPFA----------------------NHTSVPPASNSYLKPLPPEP----YDRGATVDIPLDSGNDLRAKEMELQAKENELKRKEQELKRREDAIARTGVVIEEKNWPEFFPLIHHDIPNEIPIHLQKIQYVAFTTLLGLVGCLLWNIVAVTVAWIKGEGPTIWLLSIIYFLAGVPGAYVLWYRPLYRATRT 180          
BLAST of FC922062 vs. ExPASy Swiss-Prot
Match: SCAM3_ORYSJ (Secretory carrier-associated membrane protein 3 OS=Oryza sativa subsp. japonica GN=SCAMP3 PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.533e-58
Identity = 111/207 (53.62%), Postives = 138/207 (66.67%), Query Frame = 3
Query:  114 MAGRYDSNPFDEEEVNPFSDPAVRXXXXXXXXXXXXXXXTTNSASVPPATNSRLSPLPHEPAGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRT 734
            MAG++  N F++++VNPF+                         SVPPA NSRL PL HEPA F       +DIP                      +RE++++RKEEAAA+AGIV+E+KNWPPFFP+IHH+I+NEIPIHLQR+QY+AF+++LGL  CL WNI+A TTAW+KGEGV IW LAIIYFI+GVPGAYVLWYRPLY A RT
Sbjct:    1 MAGKHGRNGFEDDDVNPFA-----------------------GGSVPPANNSRLPPLSHEPADFY-----NVDIPLDSSKDLKKKEKELQAMEAELNKRERELKRKEEAAAQAGIVIEDKNWPPFFPLIHHNISNEIPIHLQRMQYLAFSSFLGLAACLFWNIIATTTAWVKGEGVIIWLLAIIYFISGVPGAYVLWYRPLYNAMRT 179          
The following BLAST results are available for this feature:
BLAST of FC922062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
SCAM3_ARATH2.787e-6862.02Secretory carrier-associated membrane protein 3 OS... [more]
SCAM_PEA3.767e-6560.87Secretory carrier-associated membrane protein OS=P... [more]
SCAM5_ARATH1.431e-6460.00Secretory carrier-associated membrane protein 5 OS... [more]
SCAM2_ORYSJ1.869e-6458.45Secretory carrier-associated membrane protein 2 OS... [more]
SCAM1_ORYSJ2.441e-6458.65Secretory carrier-associated membrane protein 1 OS... [more]
SCAM1_ORYSI2.441e-6458.65Putative secretory carrier-associated membrane pro... [more]
SCAM4_ORYSJ5.629e-6158.49Secretory carrier-associated membrane protein 4 OS... [more]
SCAM1_ARATH1.254e-6057.84Secretory carrier-associated membrane protein 1 OS... [more]
SCAM2_ARATH6.880e-5955.39Secretory carrier-associated membrane protein 2 OS... [more]
SCAM3_ORYSJ1.533e-5853.62Secretory carrier-associated membrane protein 3 OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAM1DB02RM1 SLH Citrus sinensis cDNA clone KN0AAM1DB02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC922062 ID=FC922062; Name=FC922062; organism=Citrus sinensis; type=EST; length=734bp
ACAATTCTCCCGCTGACTGAAGACGAGTCCAACGACTTTCATATCATCTC
TCTCTCTTTAAATCGTTCTCCGATTTCTCTCAAGATTTGGTGAAAAAGTT
ATAACCGCTTGTGATGGCCGGCCGTTACGACAGCAATCCCTTCGATGAAG
AGGAAGTGAATCCTTTCTCCGACCCAGCTGTTAGGGGGAAAAGCTCGGGC
CAATCGAGGTTTGGTGGAGGTGGATTTTTTACAACAAACAGTGCAAGTGT
TCCACCTGCAACTAATTCAAGGCTTTCACCTCTTCCTCATGAACCAGCTG
GTTTCAATTTTGAACGTGATGCGCCTATTGACATTCCTCTTGATACAGCT
GCGGATTTGAAGAAGAAAGAGAAGGAACTTCAAGCTAAGGAGGCTGAATT
AAGAAGGCGGGAGCAGGATGTAAGAAGGAAAGAAGAAGCTGCAGCACGAG
CTGGAATTGTTCTTGAGGAGAAAAACTGGCCACCATTTTTCCCCATTATT
CATCATGACATTGCAAACGAAATACCAATTCATCTACAAAGGCTGCAATA
TGTTGCATTTGCAACATATTTAGGATTGTTTTTGTGTCTCCTGTGGAACA
TCGTAGCTGTTACCACAGCATGGATCAAAGGCGAAGGTGTAAAAATCTGG
TTTCTCGCCATTATTTACTTCATAGCAGGAGTTCCAGGAGCTTATGTGCT
GTGGTATCGTCCACTCTATCGTGCTTTCAGGACT
back to top