DN621449

Overview
NameDN621449
Unique NameDN621449
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length668
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN621449_ssr231 microsatellite DN621449_ssr231:231..242. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11634 contig Csv1_Contig11634:14..681. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN621449 vs. ExPASy Swiss-Prot
Match: AMYB_IPOBA (Beta-amylase OS=Ipomoea batatas GN=BMY1 PE=1 SV=4)

HSP 1 Score: 91.6633 bits (226), Expect = 3.799e-18
Identity = 36/73 (49.32%), Postives = 52/73 (71.23%), Query Frame = 3
Query:  450 PGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYIS 668
            P  YDW  Y +L  L   CGLK++A+++FHQCG   GD  ++P+PQW+L+  DK+PD+ Y++R G RN EY+S
Sbjct:   66 PKQYDWSAYRELFQLVKKCGLKIQAIMSFHQCGGNVGDAVFIPIPQWILQIGDKNPDIFYTNRAGNRNQEYLS 138          
BLAST of DN621449 vs. ExPASy Swiss-Prot
Match: AMYB_MEDSA (Beta-amylase OS=Medicago sativa GN=BMY1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.644e-16
Identity = 36/73 (49.32%), Postives = 49/73 (67.12%), Query Frame = 3
Query:  450 PGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYIS 668
            P  YDW  Y  L  L   CGLK++A+++FHQCG   GD   +PLP+WVL+  + DPD+ Y++R G RN EY+S
Sbjct:   65 PKEYDWSAYKSLFQLVQKCGLKLQAIMSFHQCGGNVGDVVNIPLPKWVLDIGESDPDIFYTNRSGIRNQEYLS 137          
BLAST of DN621449 vs. ExPASy Swiss-Prot
Match: AMYB_VIGUN (Beta-amylase OS=Vigna unguiculata GN=BMY1 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.065e-16
Identity = 41/127 (32.28%), Postives = 63/127 (49.61%), Query Frame = 3
Query:  288 NGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALXXXXXXXXXXXXXXXXXXRDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYIS 668
            N  PV+V LP     +    +  + + +    L                  +  P  YDW  Y  L  L   CGLK++A+++FHQCG   GD   +P+PQWVL+  + DPD+ Y++R G R+ EY++
Sbjct:   11 NYVPVYVMLPLGVVSVNNVFEDPEGLKEQLVQLREAGVDGVMVDVWWGIIEQKGPKQYDWSAYKSLFQLVQECGLKLQAIMSFHQCGGNVGDVVNIPIPQWVLDIGESDPDIFYTNRSGTRDKEYLT 137          
BLAST of DN621449 vs. ExPASy Swiss-Prot
Match: AMYB_HORVU (Beta-amylase OS=Hordeum vulgare GN=BMY1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.921e-16
Identity = 39/123 (31.71%), Postives = 61/123 (49.59%), Query Frame = 3
Query:  300 VFVKLPEDSTMIGGKVKRRKAMAQSFKALXXXXXXXXXXXXXXXXXXRDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYIS 668
            V+V LP D+  +  + ++   +    + L                     P  YDW  Y  L  L    GLK++A+++FHQCG   GD   +P+PQWV +   +DPD+ Y+D  G RN+EY++
Sbjct:   12 VYVMLPLDAVSVNNRFEKGDELRAQLRKLVEAGVDGVMVDVWWGLVEGKGPKAYDWSAYKQLFELVQKAGLKLQAIMSFHQCGGNVGDAVNIPIPQWVRDVGTRDPDIFYTDGHGTRNIEYLT 134          
BLAST of DN621449 vs. ExPASy Swiss-Prot
Match: AMYB_HORSP (Beta-amylase OS=Hordeum spontaneum GN=BMY1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.921e-16
Identity = 39/123 (31.71%), Postives = 61/123 (49.59%), Query Frame = 3
Query:  300 VFVKLPEDSTMIGGKVKRRKAMAQSFKALXXXXXXXXXXXXXXXXXXRDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYIS 668
            V+V LP D+  +  + ++   +    + L                     P  YDW  Y  L  L    GLK++A+++FHQCG   GD   +P+PQWV +   +DPD+ Y+D  G RN+EY++
Sbjct:   12 VYVMLPLDAVSVNNRFEKGDELRAQLRKLVEAGVDGVMVDVWWGLVEGKGPKAYDWSAYKQLFELVQKAGLKLQAIMSFHQCGGNVGDAVNIPIPQWVRDVGTRDPDIFYTDGHGTRNIEYLT 134          
BLAST of DN621449 vs. ExPASy Swiss-Prot
Match: AMYB_TRIRP (Beta-amylase OS=Trifolium repens GN=BMY1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.035e-15
Identity = 34/73 (46.58%), Postives = 49/73 (67.12%), Query Frame = 3
Query:  450 PGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYIS 668
            P  YDW  Y  L  L   CGLK++A+++FHQCG   GD   +P+PQWVL+  + DPD+ Y++R G R+ EY++
Sbjct:   65 PKEYDWSAYKSLFQLVQECGLKLQAIMSFHQCGGNVGDVVTIPIPQWVLDIGESDPDIFYTNRSGTRDKEYLT 137          
BLAST of DN621449 vs. ExPASy Swiss-Prot
Match: AMYB_ARATH (Beta-amylase OS=Arabidopsis thaliana GN=BMY1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.706e-15
Identity = 34/73 (46.58%), Postives = 49/73 (67.12%), Query Frame = 3
Query:  450 PGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYIS 668
            P  YDW  Y  L  L +  GLK++A+++FHQCG   GD   +P+PQWV +  D DPD+ Y++R G R++EY+S
Sbjct:   67 PKQYDWTAYKTLFQLIARLGLKIQAIMSFHQCGGNVGDIVTIPIPQWVRDVGDNDPDIYYTNRKGTRDIEYLS 139          
BLAST of DN621449 vs. ExPASy Swiss-Prot
Match: AMYB_WHEAT (Beta-amylase OS=Triticum aestivum GN=BMY1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.758e-15
Identity = 40/123 (32.52%), Postives = 60/123 (48.78%), Query Frame = 3
Query:  300 VFVKLPEDSTMIGGKVKRRKAMAQSFKALXXXXXXXXXXXXXXXXXXRDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYIS 668
            V+V LP D   +  K ++   +    K L                     P  YDW  Y  +  L    GLK++A+++FHQCG   GD   +P+PQWV +    DPD+ Y++R G RN+EY++
Sbjct:   12 VYVMLPLDVVSVDNKFEKGDEIRAQLKKLTEAGVDGVMIDVWWGLVEGKGPKAYDWSAYKQVFDLVHEAGLKLQAIMSFHQCGGNVGDVVNIPIPQWVRDVGATDPDIFYTNRGGTRNIEYLT 134          
BLAST of DN621449 vs. ExPASy Swiss-Prot
Match: AMYB_SOYBN (Beta-amylase OS=Glycine max GN=BMY1 PE=1 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 2.548e-14
Identity = 33/73 (45.21%), Postives = 48/73 (65.75%), Query Frame = 3
Query:  450 PGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYIS 668
            P  YDWR Y  L  L   CGL ++A+++FHQCG   GD   +P+PQWVL+  + + D+ Y++R G RN EY++
Sbjct:   65 PKQYDWRAYRSLFQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTRNKEYLT 137          
BLAST of DN621449 vs. ExPASy Swiss-Prot
Match: AMYB_MAIZE (Beta-amylase OS=Zea mays GN=BMY1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.414e-14
Identity = 38/123 (30.89%), Postives = 58/123 (47.15%), Query Frame = 3
Query:  300 VFVKLPEDSTMIGGKVKRRKAMAQSFKALXXXXXXXXXXXXXXXXXXRDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYIS 668
            V+V LP D   +    ++        K L                     PGVYDW  Y  +  L    GLK++A+++ HQCG   GD   +P+PQWV +    +PD+ Y++R G  N+EY++
Sbjct:   12 VYVMLPLDVITVDNTFEKEDETRAQLKKLTEAGADGVMIDVWWGLVEGKEPGVYDWSAYRQVFKLVQEAGLKLQAIMSCHQCGGNVGDVVNIPIPQWVRDVGKSNPDIFYTNRSGLTNIEYLT 134          
The following BLAST results are available for this feature:
BLAST of DN621449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
AMYB_IPOBA3.799e-1849.32Beta-amylase OS=Ipomoea batatas GN=BMY1 PE=1 SV=4[more]
AMYB_MEDSA4.644e-1649.32Beta-amylase OS=Medicago sativa GN=BMY1 PE=2 SV=1[more]
AMYB_VIGUN6.065e-1632.28Beta-amylase OS=Vigna unguiculata GN=BMY1 PE=2 SV=... [more]
AMYB_HORVU7.921e-1631.71Beta-amylase OS=Hordeum vulgare GN=BMY1 PE=1 SV=1[more]
AMYB_HORSP7.921e-1631.71Beta-amylase OS=Hordeum spontaneum GN=BMY1 PE=1 SV... [more]
AMYB_TRIRP1.035e-1546.58Beta-amylase OS=Trifolium repens GN=BMY1 PE=2 SV=1[more]
AMYB_ARATH6.706e-1546.58Beta-amylase OS=Arabidopsis thaliana GN=BMY1 PE=2 ... [more]
AMYB_WHEAT8.758e-1532.52Beta-amylase OS=Triticum aestivum GN=BMY1 PE=2 SV=... [more]
AMYB_SOYBN2.548e-1445.21Beta-amylase OS=Glycine max GN=BMY1 PE=1 SV=3[more]
AMYB_MAIZE7.414e-1430.89Beta-amylase OS=Zea mays GN=BMY1 PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_06L16_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006L16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621449 ID=DN621449; Name=DN621449; organism=Citrus sinensis; type=EST; length=668bp
CTTCTAAGTTTCTGCAAAAACATTTTAATTCGATTTTAATTCGAAAACCC
AACCCTAACATTAAAACAATGGCAATTGCAACGTTTGCCCCATCGTTCTG
CTGTACTCGGACCGAGCCAACTCAGTTGCCTCGGTTCCGCTTAACTCACT
CACACAAACTCCAGAGCCAAACGCGAAGACTCAGCGTCTCCTGCCGTCTC
AATTCATCCAATTCGTTATCTCCGGCCGATAACAACAACAACAATAGATA
CAAACTCCACGATGGCGCCTCGTCGCAGGGCCGTCGGAACGGTTCACCAG
TCTTCGTGAAGCTTCCGGAAGATTCTACAATGATAGGAGGAAAAGTGAAG
CGACGGAAGGCGATGGCGCAGTCGTTCAAGGCTCTGGCAGCGGCCGGCGT
GGAGGGCGTCGTGGTGGAGGTGTGGTGGGGCGTCGTGGAGAGGGATCGGC
CGGGCGTTTATGATTGGAGAGGTTATTTTGACTTGATTGTTTTGGCCAGC
AATTGTGGTTTGAAAGTTCGAGCCCTTTTGGCGTTTCATCAGTGTGGTTC
TGGCCCCGGCGACCCCAAATGGGTTCCTCTTCCCCAATGGGTGCTTGAAG
AAATTGATAAAGATCCAGATTTAGCATATTCTGACAGATTTGGAAGAAGA
AATATGGAATACATTTCC
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