DN621448

Overview
NameDN621448
Unique NameDN621448
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621448 vs. ExPASy Swiss-Prot
Match: AMYB_MEDSA (Beta-amylase OS=Medicago sativa GN=BMY1 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.670e-19
Identity = 53/150 (35.33%), Postives = 82/150 (54.67%), Query Frame = -3
Query:  257 VNTSAKVGGIHWHYGTPSHPSELTAGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGFLRQLLLAARICEIPLEGENSATSLDDAAFQQVIKMSKFYSEGLEKP----SFSFNFLRMDKNMFEYHNWVRFTRFV 694
            V  + KV GIHW Y  P+H +ELTAGYYN   RDG+ PIA+I  R+   L  +C EMRD  E+  +  SSP+  ++Q+L       I + GEN+ +  D  A+ Q+I  ++      + P     +   +LR+  ++ +  N+  F +FV
Sbjct:  291 VKLAIKVSGIHWWYKAPNHAAELTAGYYNLDDRDGYRPIAKIVSRHHAILNFTCLEMRD-SEQSSDAHSSPQKLVQQVLSGGWRENIEVAGENALSRYDATAYNQIILNARPQGVNKDGPPKLRMYGVTYLRLSDDLMQQSNFDIFKKFV 439          
BLAST of DN621448 vs. ExPASy Swiss-Prot
Match: AMYB_MAIZE (Beta-amylase OS=Zea mays GN=BMY1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.720e-19
Identity = 57/181 (31.49%), Postives = 94/181 (51.93%), Query Frame = -3
Query:  170 VNTSAKVGGIHWHYGTPSHPSELTAGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGFLRQLLLAARICEIPLEGENSATSLDDAAFQQVIKMSKFYSEGLEKPS------FSFNFLRMDKNMFEYHNWVRFTRFVRQLSGSSIFRAKLDFRGDIRPSSASDFAK 694
            V  + KV GIHW Y  P+H +ELTAGYYN   RDG+  IA +  R+  ++  +C EMRD  E+     S+PE  ++Q+L A     + L  EN+    D  A+  +++ ++   +G+ K          F +LR+   +F+  N+  F  FVR++       A LD+  ++ P +  + +K
Sbjct:  288 VQLAIKVSGIHWWYNVPNHAAELTAGYYNLDDRDGYRTIAHMLTRHRASMNFTCAEMRD-SEQSSEAKSAPEELVQQVLSAGWREGLNLACENALNRYDATAYNTILRNAR--PQGINKNGPPEHKLHGFTYLRVSDELFQEQNYTTFKTFVRRM------HANLDYNPNVDPVAPLERSK 459          
BLAST of DN621448 vs. ExPASy Swiss-Prot
Match: AMYB_IPOBA (Beta-amylase OS=Ipomoea batatas GN=BMY1 PE=1 SV=4)

HSP 1 Score: 95.1301 bits (235), Expect = 3.720e-19
Identity = 54/153 (35.29%), Postives = 85/153 (55.56%), Query Frame = -3
Query:  248 VNTSAKVGGIHWHYGTPSHPSELTAGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGFLRQLLLAARICEIPLEGENSATSLDDAAFQQVIKMSKFYSEGLEKP----SFSFNFLRMDKNMFEYHNWVRFTRFVRQL 694
            VN +AKV GIHW Y   SH +ELTAG+YN + RDG+ PIAR+  R+  TL  +C EMRD  E+     S+P+  ++Q+L +     I + GEN+    D  A+ Q++   +     L  P         +LR+  ++ +  N+  F +FV+++
Sbjct:  293 VNIAAKVSGIHWWYNHVSHAAELTAGFYNVAGRDGYRPIARMLARHHATLNFTCLEMRD-SEQPAEAKSAPQELVQQVLSSGWKEYIDVAGENALPRYDATAYNQMLLNVRPNGVNLNGPPKLKMSGLTYLRLSDDLLQTDNFELFKKFVKKM 444          
BLAST of DN621448 vs. ExPASy Swiss-Prot
Match: AMYB_HORVU (Beta-amylase OS=Hordeum vulgare GN=BMY1 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.858e-19
Identity = 52/153 (33.99%), Postives = 83/153 (54.25%), Query Frame = -3
Query:  248 VNTSAKVGGIHWHYGTPSHPSELTAGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGFLRQLLLAARICEIPLEGENSATSLDDAAFQQVIKMSKFYSEGLEKPS----FSFNFLRMDKNMFEYHNWVRFTRFVRQL 694
            V  + K+ GIHW Y  PSH +ELTAGYYN   RDG+  IAR+  R+  ++  +C EMRD+ E+     S+PE  ++Q+L A     + +  EN+    D  A+  +++ ++ +      P     F F +LR+   + E  N+V F  FV ++
Sbjct:  288 VQLAIKISGIHWWYKVPSHAAELTAGYYNLHDRDGYRTIARMLKRHRASINFTCAEMRDL-EQSSQAMSAPEELVQQVLSAGWREGLNVACENALPRYDPTAYNTILRNARPHGINQSGPPEHKLFGFTYLRLSNQLVEGQNYVNFKTFVDRM 439          
BLAST of DN621448 vs. ExPASy Swiss-Prot
Match: AMYB_HORSP (Beta-amylase OS=Hordeum spontaneum GN=BMY1 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.345e-19
Identity = 52/153 (33.99%), Postives = 82/153 (53.59%), Query Frame = -3
Query:  248 VNTSAKVGGIHWHYGTPSHPSELTAGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGFLRQLLLAARICEIPLEGENSATSLDDAAFQQVIKMSKFYSEGLEKPS----FSFNFLRMDKNMFEYHNWVRFTRFVRQL 694
            V  + K+ GIHW Y  PSH +ELTAGYYN   RDG+  IAR+  R+  ++  +C EMRD  E+     S+PE  ++Q+L A     + +  EN+    D  A+  +++ ++ +      P     F F +LR+   + E  N+V F  FV ++
Sbjct:  288 VQLAIKISGIHWWYKVPSHAAELTAGYYNLHDRDGYRTIARMLKRHRASINFTCAEMRD-SEQSSQAMSAPEELVQQVLSAGWREGLNVACENALPRYDPTAYNTILRNARPHGINQSGPPEHKLFGFTYLRLSNQLVEGQNYVNFKTFVDRM 439          
BLAST of DN621448 vs. ExPASy Swiss-Prot
Match: AMYB_VIGUN (Beta-amylase OS=Vigna unguiculata GN=BMY1 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.411e-18
Identity = 51/150 (34.00%), Postives = 81/150 (54.00%), Query Frame = -3
Query:  257 VNTSAKVGGIHWHYGTPSHPSELTAGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGFLRQLLLAARICEIPLEGENSATSLDDAAFQQVIKMSKFYSEGLEKP----SFSFNFLRMDKNMFEYHNWVRFTRFV 694
            VN + KV GIHW Y   +H +ELTAGYYN   RDG+ PIA++  R+  +L  +C EMRD  E+  +  S P+  ++Q+L       I + GEN+ +  D  A+ Q+I  ++      + P     +   +LR+   + +  N+  F +FV
Sbjct:  291 VNLAIKVSGIHWWYKAQNHAAELTAGYYNLDDRDGYRPIAKMVSRHHASLNFTCLEMRD-SEQSSDAQSGPQELVQQVLSGGWRENIEVAGENALSRYDATAYNQIILNARPQGVNKDGPPKHRMYGVTYLRLSDELLQQSNFDIFKKFV 439          
BLAST of DN621448 vs. ExPASy Swiss-Prot
Match: AMYB_SOYBN (Beta-amylase OS=Glycine max GN=BMY1 PE=1 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 2.411e-18
Identity = 55/153 (35.95%), Postives = 85/153 (55.56%), Query Frame = -3
Query:  248 VNTSAKVGGIHWHYGTPSHPSELTAGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGFLRQLLLAARICEIPLEGENSATSLDDAAFQQVIKMSK---FYSEGLEKPS-FSFNFLRMDKNMFEYHNWVRFTRFVRQL 694
            V  + KV GIHW Y   +H +ELTAGYYN + RDG+ PIAR+  R+   L  +C EMRD  E+  +  S P+  ++Q+L      +I + GEN+    D  A+ Q+I  +K     + G  K S F   +LR+  ++ +  N+  F +FV ++
Sbjct:  291 VKLAIKVSGIHWWYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRD-SEQPSDAKSGPQELVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNAKPQGVNNNGPPKLSMFGVTYLRLSDDLLQKSNFNIFKKFVLKM 442          
BLAST of DN621448 vs. ExPASy Swiss-Prot
Match: AMYB_ARATH (Beta-amylase OS=Arabidopsis thaliana GN=BMY1 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.112e-18
Identity = 57/170 (33.53%), Postives = 91/170 (53.53%), Query Frame = -3
Query:  203 VNTSAKVGGIHWHYGTPSHPSELTAGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGFLRQLLLAARICEIPLEGENSATSLDDAAFQQVIKMSKFYSEGLE---KPS---FSFNFLRMDKNMFEYHNWVRFTRFVRQLSGSSIFRAKLDFRGD 694
            VN +AKV GIHW Y   SH +ELTAGYYN   RDG+ PIAR+  ++   L  +C EM+D D       S+P+  ++++L  A    I + GEN+  +     + Q++  ++    G+    KP    + F +LR+   +F+ +N+  F + VR++       A  D+ GD
Sbjct:  293 VNLAAKVSGIHWLYNHHSHAAELTAGYYNLFKRDGYRPIARMLSKHYGILNFTCLEMKDTD-NTAEALSAPQELVQEVLSKAWKEGIEVAGENALETYGAKGYNQILLNAR--PNGVNPNGKPKLRMYGFTYLRLSDTVFQENNFELFKKLVRKM------HADQDYCGD 453          
BLAST of DN621448 vs. ExPASy Swiss-Prot
Match: AMYB_WHEAT (Beta-amylase OS=Triticum aestivum GN=BMY1 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.197e-17
Identity = 51/155 (32.90%), Postives = 83/155 (53.55%), Query Frame = -3
Query:  248 VNTSAKVGGIHWHYGTPSHPSELTAGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGFLRQLLLAARICEIPLEGENSATSLDDAAFQQVIKMSKFYSEGLEKPS------FSFNFLRMDKNMFEYHNWVRFTRFVRQL 694
            V  + K+ GIHW Y  P+H +ELTAGYYN   RDG+  IAR+  R+  ++  +C EMRD  E+     S+PE  ++Q+L A     + +  EN+    D  A+  +++ ++   +G+ K        F F +LR+   + E  N+  F  FV ++
Sbjct:  288 VQLAIKISGIHWWYRVPNHAAELTAGYYNLDDRDGYRTIARMLTRHHASMNFTCAEMRD-SEQSEEAKSAPEELVQQVLSAGWREGLHVACENALGRYDATAYNTILRNAR--PKGINKNGPPEHKLFGFTYLRLSNELLEGQNYATFQTFVEKM 439          
BLAST of DN621448 vs. ExPASy Swiss-Prot
Match: AMYB_TRIRP (Beta-amylase OS=Trifolium repens GN=BMY1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.563e-17
Identity = 50/150 (33.33%), Postives = 81/150 (54.00%), Query Frame = -3
Query:  257 VNTSAKVGGIHWHYGTPSHPSELTAGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGFLRQLLLAARICEIPLEGENSATSLDDAAFQQVIKMSKFYSEGLEKP----SFSFNFLRMDKNMFEYHNWVRFTRFV 694
            V  + KV GIHW Y   +H +ELTAGYYN   RDG+ PIA++  R+   L  +C EMRD  E+  +  S+P+  ++Q+L       I + GEN+ +  D  A+ Q+I  ++      + P     +   +LR+  ++ +  N+  F +FV
Sbjct:  291 VKLAIKVSGIHWWYKAQNHAAELTAGYYNLDDRDGYRPIAKMVSRHHGILNFTCLEMRD-SEQSSDAQSAPQELVQQVLSGGWRENIEVAGENALSRYDATAYNQIILNARPQGVNKDGPPKLRMYGVTYLRLSDDLLQESNFEIFKKFV 439          
The following BLAST results are available for this feature:
BLAST of DN621448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
AMYB_MEDSA1.670e-1935.33Beta-amylase OS=Medicago sativa GN=BMY1 PE=2 SV=1[more]
AMYB_MAIZE3.720e-1931.49Beta-amylase OS=Zea mays GN=BMY1 PE=2 SV=1[more]
AMYB_IPOBA3.720e-1935.29Beta-amylase OS=Ipomoea batatas GN=BMY1 PE=1 SV=4[more]
AMYB_HORVU4.858e-1933.99Beta-amylase OS=Hordeum vulgare GN=BMY1 PE=1 SV=1[more]
AMYB_HORSP6.345e-1933.99Beta-amylase OS=Hordeum spontaneum GN=BMY1 PE=1 SV... [more]
AMYB_VIGUN2.411e-1834.00Beta-amylase OS=Vigna unguiculata GN=BMY1 PE=2 SV=... [more]
AMYB_SOYBN2.411e-1835.95Beta-amylase OS=Glycine max GN=BMY1 PE=1 SV=3[more]
AMYB_ARATH4.112e-1833.53Beta-amylase OS=Arabidopsis thaliana GN=BMY1 PE=2 ... [more]
AMYB_WHEAT1.197e-1732.90Beta-amylase OS=Triticum aestivum GN=BMY1 PE=2 SV=... [more]
AMYB_TRIRP1.563e-1733.33Beta-amylase OS=Trifolium repens GN=BMY1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06L16_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006L16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621448 ID=DN621448; Name=DN621448; organism=Citrus sinensis; type=EST; length=696bp
TTTTTTTTTTTTTTTTTAAAAAATGAGGCATTACTACACATTTCACAACA
GAGGATCAGAGATCATCGTATTATGTATAGGCTTTACACAGCAATTGAAG
GGGTGGAAGTGTAAGGTTTGCATGATGGCCTATATTCCTTAACTAGCAAT
ATGCAAAAGCCAGTCCAACTTTGGCAAAATCTGATGCAGAAGATGGCCGA
ATATCCCCTCTAAAATCTAACTTAGCTCGAAAAATACTGGAACCAGACAA
TTGCCTCACAAAACGAGTAAAACGGACCCAGTTGTGGTATTCAAACATAT
TTTTGTCCATCCTCAGAAAGTTGAATGAGAATGAAGGCTTTTCAAGACCC
TCCGAATAAAATTTTGACATCTTTATCACCTGTTGAAATGCTGCATCATC
TAGACTGGTTGCAGAATTTTCACCTTCAAGTGGAATCTCACAAATCCGTG
CAGCCAATAAAAGCTGTCTAAGAAAGCCCTCTGGGCTACTAAAAGGGTTC
ATCTGTTTCTCATCCACATCTCGCATTTCAAAACATGAGCAGCACAAAGT
AAAACCATACCTACCAAATATGCGAGCAATCGGTAAAAACCCATCTCTAG
TTGAAGTATTGTAATAGCCAGCCGTTAGCTCAGAGGGATGTGATGGTGTG
CCATAATGCCAGTGAATTCCACCTACTTTTGCAGAGGTATTTACTC
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