DN621441
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DN621441 vs. ExPASy Swiss-Prot
Match: FDFT_NICBE (Squalene synthetase OS=Nicotiana benthamiana PE=2 SV=1) HSP 1 Score: 331.257 bits (848), Expect = 3.305e-90 Identity = 163/215 (75.81%), Postives = 179/215 (83.26%), Query Frame = 3 Query: 3 LSNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDHAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAKVIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLSRVEAIQKACMDSGVLNKRKSYIIQSELRYSSTMXXXXXXXXXXXXSYLSSTRA 647 LSNSMGLFLQKTNIIRDYLEDINE+PKCRMFWPREIWSKYVNKLE+LKYE+NS KAVQCLNDMVTNAL HVEDCL YMSALRD +IFRFCAIPQ+MAIGTLA+CY+NIEVFRGVVKMRRGLTAKVIDRT + DVY AF+DFS +LK K+N NDPNATKTL R+E I K C DSG LNKRKSYII+SE YS + + LS R+ Sbjct: 197 LSNSMGLFLQKTNIIRDYLEDINEVPKCRMFWPREIWSKYVNKLEELKYEDNSAKAVQCLNDMVTNALPHVEDCLTYMSALRDPSIFRFCAIPQVMAIGTLAMCYDNIEVFRGVVKMRRGLTAKVIDRTRTIADVYGAFFDFSCMLKSKVNNNDPNATKTLKRLEVILKTCRDSGTLNKRKSYIIRSEPNYSPVLIVVIFIILAIILAQLSGNRS 411
BLAST of DN621441 vs. ExPASy Swiss-Prot
Match: FDFT_ARATH (Squalene synthetase OS=Arabidopsis thaliana GN=SQS1 PE=2 SV=1) HSP 1 Score: 312.768 bits (800), Expect = 1.216e-84 Identity = 148/184 (80.43%), Postives = 168/184 (91.30%), Query Frame = 3 Query: 3 LSNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDHAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAKVIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLSRVEAIQKACMDSGVLNKRKSYI 554 +SNSMGLFLQKTNIIRDYLEDINEIPK RMFWPREIW KY +KLEDLKYEEN++K+VQCLN+MVTNALMH+EDCLKYM +LRD +IFRFCAIPQIMAIGTLALCYNN +VFRGVVK+RRGLTAKVIDRT M DVY AFYDFS +LK K++KNDPNA+KTL+R+EA+QK C D+GVL RKSY+ Sbjct: 199 ISNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWGKYADKLEDLKYEENTNKSVQCLNEMVTNALMHIEDCLKYMVSLRDPSIFRFCAIPQIMAIGTLALCYNNEQVFRGVVKLRRGLTAKVIDRTKTMADVYGAFYDFSCMLKTKVDKNDPNASKTLNRLEAVQKLCRDAGVLQNRKSYV 382
BLAST of DN621441 vs. ExPASy Swiss-Prot
Match: FDFT_DICDI (Squalene synthetase OS=Dictyostelium discoideum GN=fdfT PE=3 SV=1) HSP 1 Score: 184.882 bits (468), Expect = 3.826e-46 Identity = 89/174 (51.15%), Postives = 122/174 (70.11%), Query Frame = 3 Query: 6 SNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDHAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAKVID--RTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLSRVEAIQKACMD 521 SN MGLFLQKTNIIRDYLEDINE R+FWPR++W++Y LE+ K + A+ CLND++TNAL H L YMS L++ + FCAIPQ+MAIGTL CYNN VF GVVK+R+G A ++D ++ +T Y F+ F+N ++ K+ NDP+A KT+ +E+I+K C++ Sbjct: 204 SNQMGLFLQKTNIIRDYLEDINEK---RIFWPRDVWARYTLHLENFKEAKYQIPALHCLNDLITNALSHALIALDYMSRLKNPQVINFCAIPQVMAIGTLNACYNNYNVFTGVVKIRKGQRALIVDAIQSKGLTATYELFFKFANEMRHKVPPNDPSAKKTIQHLESIEKLCIE 374
BLAST of DN621441 vs. ExPASy Swiss-Prot
Match: FDFT_RAT (Squalene synthetase OS=Rattus norvegicus GN=Fdft1 PE=2 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 1.607e-44 Identity = 88/182 (48.35%), Postives = 119/182 (65.38%), Query Frame = 3 Query: 6 SNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDHAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAKVIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLSRVEAIQKACMDSGVLNKRKSY 551 +NSMGLFLQKTNIIRDYLED E R FWP+E+W KYV KLED EN D AV+CLN+++TNAL H+ D + Y+S LR+ ++F FCAIPQ+MAI TLA CYNN +VF+GVVK+R+G ++ NM V Y + + ++ +DP+A+K + I+ + + L R Y Sbjct: 204 ANSMGLFLQKTNIIRDYLEDQQE---GRQFWPQEVWGKYVKKLEDFVKPENVDVAVKCLNELITNALQHIPDVITYLSRLRNQSVFNFCAIPQVMAIATLAACYNNHQVFKGVVKIRKGQAVTLMMDATNMPAVKAIIYQYIEEIYHRVPNSDPSASKAKQLISNIRTQSLPNCQLISRSHY 382
BLAST of DN621441 vs. ExPASy Swiss-Prot
Match: FDFT_MOUSE (Squalene synthetase OS=Mus musculus GN=Fdft1 PE=2 SV=1) HSP 1 Score: 179.104 bits (453), Expect = 2.099e-44 Identity = 88/182 (48.35%), Postives = 119/182 (65.38%), Query Frame = 3 Query: 6 SNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDHAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAKVIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLSRVEAIQKACMDSGVLNKRKSY 551 +NSMGLFLQKTNIIRDYLED E R FWP+E+W +Y+ KLED EN D AVQCLN+++TN L H+ D L Y+S LR+ ++F FCAIPQ+MAI TLA CYNN +VF+GVVK+R+G ++ NM V Y + + +I +DP+++KT + I+ + + L R Y Sbjct: 204 ANSMGLFLQKTNIIRDYLEDQQE---GRKFWPQEVWGRYIKKLEDFAKPENVDVAVQCLNELITNTLQHIPDVLTYLSRLRNQSVFNFCAIPQVMAIATLAACYNNQQVFKGVVKIRKGQAVTLMMDATNMPAVKAIIYQYIEEIYHRIPNSDPSSSKTKQVISKIRTQNLPNCQLISRSHY 382
BLAST of DN621441 vs. ExPASy Swiss-Prot
Match: FDFT_BOVIN (Squalene synthetase OS=Bos taurus GN=FDFT1 PE=2 SV=1) HSP 1 Score: 175.252 bits (443), Expect = 3.031e-43 Identity = 90/182 (49.45%), Postives = 117/182 (64.29%), Query Frame = 3 Query: 6 SNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDHAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAKVIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLSRVEAIQKACMDSGVLNKRKSY 551 +NSMGLFLQKTNIIRDYLED E R FWP+E WSKYV KL D EN D AVQCLN+++TN L H+ D + Y+S LR+ +IF FCAIPQ+MAI TLA CYNN +VF+GVVK+R+G ++ NM V + + + +I +DP +TKT + I+ + + L R Y Sbjct: 204 ANSMGLFLQKTNIIRDYLEDQRE---GREFWPQETWSKYVKKLGDFAKPENIDLAVQCLNELITNTLHHIPDVITYLSRLRNQSIFNFCAIPQVMAIATLAACYNNQQVFKGVVKIRKGQAVTLMMDATNMPAVKAIIHQYMEEIYHRIPNSDPCSTKTQQIISTIRTQNLPNCQLVSRSHY 382
BLAST of DN621441 vs. ExPASy Swiss-Prot
Match: FDFT_PONAB (Squalene synthetase OS=Pongo abelii GN=FDFT1 PE=2 SV=1) HSP 1 Score: 174.096 bits (440), Expect = 6.753e-43 Identity = 87/182 (47.80%), Postives = 118/182 (64.84%), Query Frame = 3 Query: 6 SNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDHAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAKVIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLSRVEAIQKACMDSGVLNKRKSY 551 +NSMGLFLQKTNIIRDYLED R FWP+E+WS+YV KL D EN D AVQCLN+++TNAL H+ D + Y+S LR+ ++F FCAIPQ+MAI TLA CYNN +VF+G VK+R+G ++ NM V Y + + +I +DP+++KT + I+ + + L R Y Sbjct: 204 ANSMGLFLQKTNIIRDYLEDQQG---GREFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLRNQSVFNFCAIPQVMAIATLAACYNNQQVFKGAVKIRKGQAVTLMMDATNMPAVKAIIYQYMEEIYHRIPDSDPSSSKTRQIISTIRTQNLPNCQLISRSHY 382
BLAST of DN621441 vs. ExPASy Swiss-Prot
Match: FDFT_HUMAN (Squalene synthetase OS=Homo sapiens GN=FDFT1 PE=1 SV=1) HSP 1 Score: 174.096 bits (440), Expect = 6.753e-43 Identity = 87/182 (47.80%), Postives = 118/182 (64.84%), Query Frame = 3 Query: 6 SNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDHAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAKVIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLSRVEAIQKACMDSGVLNKRKSY 551 +NSMGLFLQKTNIIRDYLED R FWP+E+WS+YV KL D EN D AVQCLN+++TNAL H+ D + Y+S LR+ ++F FCAIPQ+MAI TLA CYNN +VF+G VK+R+G ++ NM V Y + + +I +DP+++KT + I+ + + L R Y Sbjct: 204 ANSMGLFLQKTNIIRDYLEDQQG---GREFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLRNQSVFNFCAIPQVMAIATLAACYNNQQVFKGAVKIRKGQAVTLMMDATNMPAVKAIIYQYMEEIYHRIPDSDPSSSKTRQIISTIRTQNLPNCQLISRSHY 382
BLAST of DN621441 vs. ExPASy Swiss-Prot
Match: FDFT_CANAL (Squalene synthetase OS=Candida albicans GN=ERG9 PE=3 SV=1) HSP 1 Score: 154.066 bits (388), Expect = 7.232e-37 Identity = 79/173 (45.66%), Postives = 109/173 (63.01%), Query Frame = 3 Query: 6 SNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDK---AVQCLNDMVTNALMHVEDCLKYMSALRDHAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAKVIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLSRVEAIQKAC 515 ++SMGLFLQKTNIIRDY ED+ + R FWPREIWSKY L+D + K V C+N++V NAL HV DCL Y+S ++D + F FCAIPQ+MA+ TLA YNN +V GVVK+R+G T ++I + + V F ++ ++ K + DPN K + I++ C Sbjct: 212 ADSMGLFLQKTNIIRDYHEDLQD---GRSFWPREIWSKYTENLQDFHKVKTPAKEFAGVSCINELVLNALGHVTDCLDYLSLVKDPSSFSFCAIPQVMAVATLAEVYNNPKVLHGVVKIRKGTTCRLILESRTLPGVVKIFKEYIQVINHKSSVRDPNYLKIGIKCGEIEQYC 381
BLAST of DN621441 vs. ExPASy Swiss-Prot
Match: FDFT_SCHPO (Squalene synthetase OS=Schizosaccharomyces pombe GN=erg9 PE=1 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 6.122e-36 Identity = 77/159 (48.43%), Postives = 103/159 (64.78%), Query Frame = 3 Query: 3 LSNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDHAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAKVIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATK 479 +SNS+GLFLQK NIIRDY ED ++ R FWPREIWSKY + DL +NS+KA++CL+DM NAL H D L Y+S L+ IF FCAIPQ+MAI TLA + N +VF+ VK+R+G ++I + N+ +V F ++ + K DPN K Sbjct: 207 ISNSLGLFLQKVNIIRDYREDFDDN---RHFWPREIWSKYTSSFGDLCLPDNSEKALECLSDMTANALTHATDALVYLSQLKTQEIFNFCAIPQVMAIATLAAVFRNPDVFQTNVKIRKGQAVQIILHSVNLKNVCDLFLRYTRDIHYKNTPKDPNFLK 362 The following BLAST results are available for this feature:
BLAST of DN621441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 17
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DN621441 ID=DN621441; Name=DN621441; organism=Citrus sinensis; type=EST; length=725bpback to top |