DN621441

Overview
NameDN621441
Unique NameDN621441
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2190 contig Csv1_Contig2190:923..1647. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN621441 vs. ExPASy Swiss-Prot
Match: FDFT_NICBE (Squalene synthetase OS=Nicotiana benthamiana PE=2 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 3.305e-90
Identity = 163/215 (75.81%), Postives = 179/215 (83.26%), Query Frame = 3
Query:    3 LSNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDHAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAKVIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLSRVEAIQKACMDSGVLNKRKSYIIQSELRYSSTMXXXXXXXXXXXXSYLSSTRA 647
            LSNSMGLFLQKTNIIRDYLEDINE+PKCRMFWPREIWSKYVNKLE+LKYE+NS KAVQCLNDMVTNAL HVEDCL YMSALRD +IFRFCAIPQ+MAIGTLA+CY+NIEVFRGVVKMRRGLTAKVIDRT  + DVY AF+DFS +LK K+N NDPNATKTL R+E I K C DSG LNKRKSYII+SE  YS  +            + LS  R+
Sbjct:  197 LSNSMGLFLQKTNIIRDYLEDINEVPKCRMFWPREIWSKYVNKLEELKYEDNSAKAVQCLNDMVTNALPHVEDCLTYMSALRDPSIFRFCAIPQVMAIGTLAMCYDNIEVFRGVVKMRRGLTAKVIDRTRTIADVYGAFFDFSCMLKSKVNNNDPNATKTLKRLEVILKTCRDSGTLNKRKSYIIRSEPNYSPVLIVVIFIILAIILAQLSGNRS 411          
BLAST of DN621441 vs. ExPASy Swiss-Prot
Match: FDFT_ARATH (Squalene synthetase OS=Arabidopsis thaliana GN=SQS1 PE=2 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 1.216e-84
Identity = 148/184 (80.43%), Postives = 168/184 (91.30%), Query Frame = 3
Query:    3 LSNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDHAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAKVIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLSRVEAIQKACMDSGVLNKRKSYI 554
            +SNSMGLFLQKTNIIRDYLEDINEIPK RMFWPREIW KY +KLEDLKYEEN++K+VQCLN+MVTNALMH+EDCLKYM +LRD +IFRFCAIPQIMAIGTLALCYNN +VFRGVVK+RRGLTAKVIDRT  M DVY AFYDFS +LK K++KNDPNA+KTL+R+EA+QK C D+GVL  RKSY+
Sbjct:  199 ISNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWGKYADKLEDLKYEENTNKSVQCLNEMVTNALMHIEDCLKYMVSLRDPSIFRFCAIPQIMAIGTLALCYNNEQVFRGVVKLRRGLTAKVIDRTKTMADVYGAFYDFSCMLKTKVDKNDPNASKTLNRLEAVQKLCRDAGVLQNRKSYV 382          
BLAST of DN621441 vs. ExPASy Swiss-Prot
Match: FDFT_DICDI (Squalene synthetase OS=Dictyostelium discoideum GN=fdfT PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.826e-46
Identity = 89/174 (51.15%), Postives = 122/174 (70.11%), Query Frame = 3
Query:    6 SNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDHAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAKVID--RTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLSRVEAIQKACMD 521
            SN MGLFLQKTNIIRDYLEDINE    R+FWPR++W++Y   LE+ K  +    A+ CLND++TNAL H    L YMS L++  +  FCAIPQ+MAIGTL  CYNN  VF GVVK+R+G  A ++D  ++  +T  Y  F+ F+N ++ K+  NDP+A KT+  +E+I+K C++
Sbjct:  204 SNQMGLFLQKTNIIRDYLEDINEK---RIFWPRDVWARYTLHLENFKEAKYQIPALHCLNDLITNALSHALIALDYMSRLKNPQVINFCAIPQVMAIGTLNACYNNYNVFTGVVKIRKGQRALIVDAIQSKGLTATYELFFKFANEMRHKVPPNDPSAKKTIQHLESIEKLCIE 374          
BLAST of DN621441 vs. ExPASy Swiss-Prot
Match: FDFT_RAT (Squalene synthetase OS=Rattus norvegicus GN=Fdft1 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.607e-44
Identity = 88/182 (48.35%), Postives = 119/182 (65.38%), Query Frame = 3
Query:    6 SNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDHAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAKVIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLSRVEAIQKACMDSGVLNKRKSY 551
            +NSMGLFLQKTNIIRDYLED  E    R FWP+E+W KYV KLED    EN D AV+CLN+++TNAL H+ D + Y+S LR+ ++F FCAIPQ+MAI TLA CYNN +VF+GVVK+R+G    ++    NM  V    Y +   +  ++  +DP+A+K    +  I+   + +  L  R  Y
Sbjct:  204 ANSMGLFLQKTNIIRDYLEDQQE---GRQFWPQEVWGKYVKKLEDFVKPENVDVAVKCLNELITNALQHIPDVITYLSRLRNQSVFNFCAIPQVMAIATLAACYNNHQVFKGVVKIRKGQAVTLMMDATNMPAVKAIIYQYIEEIYHRVPNSDPSASKAKQLISNIRTQSLPNCQLISRSHY 382          
BLAST of DN621441 vs. ExPASy Swiss-Prot
Match: FDFT_MOUSE (Squalene synthetase OS=Mus musculus GN=Fdft1 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.099e-44
Identity = 88/182 (48.35%), Postives = 119/182 (65.38%), Query Frame = 3
Query:    6 SNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDHAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAKVIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLSRVEAIQKACMDSGVLNKRKSY 551
            +NSMGLFLQKTNIIRDYLED  E    R FWP+E+W +Y+ KLED    EN D AVQCLN+++TN L H+ D L Y+S LR+ ++F FCAIPQ+MAI TLA CYNN +VF+GVVK+R+G    ++    NM  V    Y +   +  +I  +DP+++KT   +  I+   + +  L  R  Y
Sbjct:  204 ANSMGLFLQKTNIIRDYLEDQQE---GRKFWPQEVWGRYIKKLEDFAKPENVDVAVQCLNELITNTLQHIPDVLTYLSRLRNQSVFNFCAIPQVMAIATLAACYNNQQVFKGVVKIRKGQAVTLMMDATNMPAVKAIIYQYIEEIYHRIPNSDPSSSKTKQVISKIRTQNLPNCQLISRSHY 382          
BLAST of DN621441 vs. ExPASy Swiss-Prot
Match: FDFT_BOVIN (Squalene synthetase OS=Bos taurus GN=FDFT1 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.031e-43
Identity = 90/182 (49.45%), Postives = 117/182 (64.29%), Query Frame = 3
Query:    6 SNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDHAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAKVIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLSRVEAIQKACMDSGVLNKRKSY 551
            +NSMGLFLQKTNIIRDYLED  E    R FWP+E WSKYV KL D    EN D AVQCLN+++TN L H+ D + Y+S LR+ +IF FCAIPQ+MAI TLA CYNN +VF+GVVK+R+G    ++    NM  V    + +   +  +I  +DP +TKT   +  I+   + +  L  R  Y
Sbjct:  204 ANSMGLFLQKTNIIRDYLEDQRE---GREFWPQETWSKYVKKLGDFAKPENIDLAVQCLNELITNTLHHIPDVITYLSRLRNQSIFNFCAIPQVMAIATLAACYNNQQVFKGVVKIRKGQAVTLMMDATNMPAVKAIIHQYMEEIYHRIPNSDPCSTKTQQIISTIRTQNLPNCQLVSRSHY 382          
BLAST of DN621441 vs. ExPASy Swiss-Prot
Match: FDFT_PONAB (Squalene synthetase OS=Pongo abelii GN=FDFT1 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.753e-43
Identity = 87/182 (47.80%), Postives = 118/182 (64.84%), Query Frame = 3
Query:    6 SNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDHAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAKVIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLSRVEAIQKACMDSGVLNKRKSY 551
            +NSMGLFLQKTNIIRDYLED       R FWP+E+WS+YV KL D    EN D AVQCLN+++TNAL H+ D + Y+S LR+ ++F FCAIPQ+MAI TLA CYNN +VF+G VK+R+G    ++    NM  V    Y +   +  +I  +DP+++KT   +  I+   + +  L  R  Y
Sbjct:  204 ANSMGLFLQKTNIIRDYLEDQQG---GREFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLRNQSVFNFCAIPQVMAIATLAACYNNQQVFKGAVKIRKGQAVTLMMDATNMPAVKAIIYQYMEEIYHRIPDSDPSSSKTRQIISTIRTQNLPNCQLISRSHY 382          
BLAST of DN621441 vs. ExPASy Swiss-Prot
Match: FDFT_HUMAN (Squalene synthetase OS=Homo sapiens GN=FDFT1 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.753e-43
Identity = 87/182 (47.80%), Postives = 118/182 (64.84%), Query Frame = 3
Query:    6 SNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDHAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAKVIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLSRVEAIQKACMDSGVLNKRKSY 551
            +NSMGLFLQKTNIIRDYLED       R FWP+E+WS+YV KL D    EN D AVQCLN+++TNAL H+ D + Y+S LR+ ++F FCAIPQ+MAI TLA CYNN +VF+G VK+R+G    ++    NM  V    Y +   +  +I  +DP+++KT   +  I+   + +  L  R  Y
Sbjct:  204 ANSMGLFLQKTNIIRDYLEDQQG---GREFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLRNQSVFNFCAIPQVMAIATLAACYNNQQVFKGAVKIRKGQAVTLMMDATNMPAVKAIIYQYMEEIYHRIPDSDPSSSKTRQIISTIRTQNLPNCQLISRSHY 382          
BLAST of DN621441 vs. ExPASy Swiss-Prot
Match: FDFT_CANAL (Squalene synthetase OS=Candida albicans GN=ERG9 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 7.232e-37
Identity = 79/173 (45.66%), Postives = 109/173 (63.01%), Query Frame = 3
Query:    6 SNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDK---AVQCLNDMVTNALMHVEDCLKYMSALRDHAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAKVIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLSRVEAIQKAC 515
            ++SMGLFLQKTNIIRDY ED+ +    R FWPREIWSKY   L+D    +   K    V C+N++V NAL HV DCL Y+S ++D + F FCAIPQ+MA+ TLA  YNN +V  GVVK+R+G T ++I  +  +  V   F ++  ++  K +  DPN  K   +   I++ C
Sbjct:  212 ADSMGLFLQKTNIIRDYHEDLQD---GRSFWPREIWSKYTENLQDFHKVKTPAKEFAGVSCINELVLNALGHVTDCLDYLSLVKDPSSFSFCAIPQVMAVATLAEVYNNPKVLHGVVKIRKGTTCRLILESRTLPGVVKIFKEYIQVINHKSSVRDPNYLKIGIKCGEIEQYC 381          
BLAST of DN621441 vs. ExPASy Swiss-Prot
Match: FDFT_SCHPO (Squalene synthetase OS=Schizosaccharomyces pombe GN=erg9 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 6.122e-36
Identity = 77/159 (48.43%), Postives = 103/159 (64.78%), Query Frame = 3
Query:    3 LSNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDHAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAKVIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATK 479
            +SNS+GLFLQK NIIRDY ED ++    R FWPREIWSKY +   DL   +NS+KA++CL+DM  NAL H  D L Y+S L+   IF FCAIPQ+MAI TLA  + N +VF+  VK+R+G   ++I  + N+ +V   F  ++  +  K    DPN  K
Sbjct:  207 ISNSLGLFLQKVNIIRDYREDFDDN---RHFWPREIWSKYTSSFGDLCLPDNSEKALECLSDMTANALTHATDALVYLSQLKTQEIFNFCAIPQVMAIATLAAVFRNPDVFQTNVKIRKGQAVQIILHSVNLKNVCDLFLRYTRDIHYKNTPKDPNFLK 362          
The following BLAST results are available for this feature:
BLAST of DN621441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
FDFT_NICBE3.305e-9075.81Squalene synthetase OS=Nicotiana benthamiana PE=2 ... [more]
FDFT_ARATH1.216e-8480.43Squalene synthetase OS=Arabidopsis thaliana GN=SQS... [more]
FDFT_DICDI3.826e-4651.15Squalene synthetase OS=Dictyostelium discoideum GN... [more]
FDFT_RAT1.607e-4448.35Squalene synthetase OS=Rattus norvegicus GN=Fdft1 ... [more]
FDFT_MOUSE2.099e-4448.35Squalene synthetase OS=Mus musculus GN=Fdft1 PE=2 ... [more]
FDFT_BOVIN3.031e-4349.45Squalene synthetase OS=Bos taurus GN=FDFT1 PE=2 SV... [more]
FDFT_PONAB6.753e-4347.80Squalene synthetase OS=Pongo abelii GN=FDFT1 PE=2 ... [more]
FDFT_HUMAN6.753e-4347.80Squalene synthetase OS=Homo sapiens GN=FDFT1 PE=1 ... [more]
FDFT_CANAL7.232e-3745.66Squalene synthetase OS=Candida albicans GN=ERG9 PE... [more]
FDFT_SCHPO6.122e-3648.43Squalene synthetase OS=Schizosaccharomyces pombe G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06L11_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006L11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621441 ID=DN621441; Name=DN621441; organism=Citrus sinensis; type=EST; length=725bp
GTCTTTCCAACTCGATGGGTTTATTTCTTCAGAAAACAAATATCATTCGA
GATTATCTGGAAGATATTAATGAGATACCGAAGTGTCGCATGTTTTGGCC
TCGTGAGATCTGGAGTAAATATGTTAATAAACTTGAGGACTTAAAATATG
AGGAAAACTCTGACAAAGCAGTACAGTGCTTGAATGATATGGTCACCAAT
GCTCTGATGCATGTGGAAGATTGTTTGAAGTACATGTCTGCTTTAAGGGA
TCATGCTATATTCCGATTCTGTGCTATCCCTCAGATCATGGCTATTGGAA
CACTAGCATTATGCTACAACAATATTGAAGTCTTCAGAGGTGTAGTCAAA
ATGAGGCGTGGACTCACCGCTAAAGTCATTGACCGAACAAACAACATGAC
TGATGTCTATCTTGCCTTCTATGATTTTTCCAATATTCTGAAACCCAAGA
TTAACAAGAATGATCCAAATGCGACAAAAACATTGAGCAGGGTGGAAGCA
ATACAGAAAGCTTGCATGGACTCTGGAGTCCTAAACAAAAGAAAATCTTA
CATTATTCAAAGTGAGCTGCGATATAGTTCAACCATGATTGTCATATTTT
TCATCATACTGGCCATTATTTTCTCTTACCTCTCTTCCACCCGAGCAAGC
AAGTAGTAGGATCACCACCATCTTTAACTTATTGCCGGGACCATCCATTG
TGCGACCAATCAAGTGTTTGCCTTA
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