DN621436

Overview
NameDN621436
Unique NameDN621436
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN621436_ssr88 microsatellite DN621436_ssr88:88..99. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5821 contig Csv1_Contig5821:93..765. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN621436 vs. ExPASy Swiss-Prot
Match: MPPB_ARATH (Probable mitochondrial-processing peptidase subunit beta OS=Arabidopsis thaliana GN=At3g02090 PE=1 SV=2)

HSP 1 Score: 291.582 bits (745), Expect = 2.547e-78
Identity = 152/228 (66.67%), Postives = 175/228 (76.75%), Query Frame = 1
Query:   10 MAFKHLLTLARRSHR-------PSSTALFTAIRXXXXXXXXXXXXXXXXXXXXXXNVMIYDRLAEAVKAKLKNLENPDPKFLKYGSPHPTLTSHTHILAAPETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREM 672
            MA K+LL+LARRS R         S++ F+AI                       ++M YD  AE +K K+K LENPD +FLKY SPHP L SH HIL+APET++TTLPNGLRVATESNL+AKTATVGVWIDAGSRFE+DETNGTAHFLEHMIFKGT++RT R LEEEIE++GGHLNAYTSREQTTYYAKVLD +VN ALD+LADILQNS F++ RI RERDVILREM
Sbjct:    1 MAMKNLLSLARRSQRRLFLTQATRSSSSFSAI------DSVPASASPTALSPPPPHLMPYDHAAEIIKNKIKKLENPDKRFLKYASPHPILASHNHILSAPETRVTTLPNGLRVATESNLSAKTATVGVWIDAGSRFESDETNGTAHFLEHMIFKGTDRRTVRALEEEIEDIGGHLNAYTSREQTTYYAKVLDSNVNQALDVLADILQNSKFEEQRINRERDVILREM 222          
BLAST of DN621436 vs. ExPASy Swiss-Prot
Match: MPPB_RAT (Mitochondrial-processing peptidase subunit beta OS=Rattus norvegicus GN=Pmpcb PE=1 SV=3)

HSP 1 Score: 178.718 bits (452), Expect = 2.406e-44
Identity = 89/132 (67.42%), Postives = 104/132 (78.79%), Query Frame = 1
Query:  277 ILAAPETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREM 672
            +L  PET++T L NGLRVA+E N    T TVG+WIDAGSR+E ++ NGTAHFLEHM FKGT+KR+  DLE EIENMG HLNAYTSREQT YYAK   KD+  A++ILADI+QNST  +A I RER VILREM
Sbjct:   52 VLNVPETQVTCLENGLRVASE-NSGISTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILREM 182          
BLAST of DN621436 vs. ExPASy Swiss-Prot
Match: MPPB_BOVIN (Mitochondrial-processing peptidase subunit beta OS=Bos taurus GN=PMPCB PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.105e-44
Identity = 89/132 (67.42%), Postives = 105/132 (79.55%), Query Frame = 1
Query:  277 ILAAPETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREM 672
            +L  PET++T L NGLRVA+E +  A T TVG+WIDAGSR+E ++ NGTAHFLEHM FKGT+KR+  DLE EIENMG HLNAYTSREQT YYAK   KD+  A++ILADI+QNST  +A I RER VILREM
Sbjct:   53 VLNVPETRVTCLENGLRVASEDSGLA-TCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILREM 183          
BLAST of DN621436 vs. ExPASy Swiss-Prot
Match: MPPB_MOUSE (Mitochondrial-processing peptidase subunit beta OS=Mus musculus GN=Pmpcb PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.361e-44
Identity = 88/132 (66.67%), Postives = 104/132 (78.79%), Query Frame = 1
Query:  277 ILAAPETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREM 672
            +L  PET++T L NGLRVA+E N    T TVG+WIDAGSR+E ++ NGTAHFLEHM FKGT+KR+  DLE EIENMG HLNAYTSREQT YYAK   +D+  A++ILADI+QNST  +A I RER VILREM
Sbjct:   52 VLNVPETQVTCLENGLRVASE-NSGLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSRDLPRAVEILADIIQNSTLGEAEIERERGVILREM 182          
BLAST of DN621436 vs. ExPASy Swiss-Prot
Match: MPPB_NEUCR (Mitochondrial-processing peptidase subunit beta OS=Neurospora crassa GN=pep PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.144e-44
Identity = 98/165 (59.39%), Postives = 120/165 (72.73%), Query Frame = 1
Query:  175 LAEAVKAKLKNLENPDPKFLKYGSPHPTLTSHTHILAAPETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILRE 669
            LA+ VKA+   + NP  + L   +PH    S T I    +T+ TTL NGL VA++ +  A+T+TVG+WIDAGSR ETDETNGTAHFLEH+ FKGT KRT + LE EIENMG HLNAYTSRE T Y+AK L++DV   +DIL DILQNS  +++ I RERDVILRE
Sbjct:   10 LAQGVKARAGGVINPFRRGL--ATPH----SGTGI----KTQTTTLKNGLTVASQYSPYAQTSTVGMWIDAGSRAETDETNGTAHFLEHLAFKGTTKRTQQQLELEIENMGAHLNAYTSRENTVYFAKALNEDVPKCVDILQDILQNSKLEESAIERERDVILRE 164          
BLAST of DN621436 vs. ExPASy Swiss-Prot
Match: MPPB_BLAEM (Mitochondrial-processing peptidase subunit beta OS=Blastocladiella emersonii GN=MPP1 PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.194e-43
Identity = 89/131 (67.94%), Postives = 101/131 (77.10%), Query Frame = 1
Query:  277 ILAAPETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILRE 669
            +L  P+T++T LPNGL VATESN A  TATVGVWID+GSR ET   NG AHFLEH+ FKGT++RT   LE EIENMGGHLNAYTSREQT YYAK+  +DV   ++IL DILQNST D   I RER VILRE
Sbjct:   29 LLNVPKTQVTRLPNGLTVATESNPALATATVGVWIDSGSRAETKANNGVAHFLEHISFKGTKQRTQSGLEIEIENMGGHLNAYTSREQTVYYAKLFSQDVAKGVNILGDILQNSTLDPGAIDRERAVILRE 159          
BLAST of DN621436 vs. ExPASy Swiss-Prot
Match: MPPB_PONAB (Mitochondrial-processing peptidase subunit beta OS=Pongo abelii GN=PMPCB PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.560e-43
Identity = 87/132 (65.91%), Postives = 104/132 (78.79%), Query Frame = 1
Query:  277 ILAAPETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREM 672
            +L  PET++T L +GLRVA+E +    T TVG+WIDAGSR+E ++ NGTAHFLEHM FKGT+KR+  DLE EIENMG HLNAYTSREQT YYAK   KD+  A++ILADI+QNST  +A I RER VILREM
Sbjct:   52 VLNVPETRVTCLESGLRVASEDS-GLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILREM 182          
BLAST of DN621436 vs. ExPASy Swiss-Prot
Match: MPPB_HUMAN (Mitochondrial-processing peptidase subunit beta OS=Homo sapiens GN=PMPCB PE=1 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 1.560e-43
Identity = 87/132 (65.91%), Postives = 104/132 (78.79%), Query Frame = 1
Query:  277 ILAAPETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREM 672
            +L  PET++T L +GLRVA+E +    T TVG+WIDAGSR+E ++ NGTAHFLEHM FKGT+KR+  DLE EIENMG HLNAYTSREQT YYAK   KD+  A++ILADI+QNST  +A I RER VILREM
Sbjct:   52 VLNVPETRVTCLESGLRVASEDS-GLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILREM 182          
BLAST of DN621436 vs. ExPASy Swiss-Prot
Match: MPPB_LENED (Mitochondrial-processing peptidase subunit beta OS=Lentinula edodes GN=mppB PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.660e-43
Identity = 89/127 (70.08%), Postives = 101/127 (79.53%), Query Frame = 1
Query:  289 PETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILRE 669
            P T+I+TL NGL VATES   A+TATVGVWIDAGSR ETD+TNGTAHFLEHM FKGT +R+   LE E+EN+G HLNAYTSREQT YYAK   KDV  A+DI++DILQNS  +   I RERDVILRE
Sbjct:   27 PFTEISTLSNGLTVATESQPHAQTATVGVWIDAGSRAETDKTNGTAHFLEHMAFKGTGRRSQHALELEVENIGAHLNAYTSREQTVYYAKSFSKDVPVAVDIISDILQNSKLESGAIERERDVILRE 153          
BLAST of DN621436 vs. ExPASy Swiss-Prot
Match: MPPB_DICDI (Mitochondrial-processing peptidase subunit beta OS=Dictyostelium discoideum GN=mppB PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.046e-39
Identity = 83/134 (61.94%), Postives = 104/134 (77.61%), Query Frame = 1
Query:  271 THILAAPETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKR-TARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILRE 669
            +++  +PETKITTL NG+RVATE     + A+VGVW+D+GS +ETD+ NG AHFLEHMIFKGT KR T + +E EIENMGG LNA+TSRE + YY KVL  +V NA+DIL+DILQNS F+ + I +ERD IL E
Sbjct:   27 SYLKISPETKITTLSNGIRVATEQTYG-EVASVGVWVDSGSVYETDKNNGVAHFLEHMIFKGTAKRPTPQSIETEIENMGGSLNAFTSREHSAYYMKVLKDNVPNAVDILSDILQNSKFETSLIEQERDTILSE 159          
The following BLAST results are available for this feature:
BLAST of DN621436 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
MPPB_ARATH2.547e-7866.67Probable mitochondrial-processing peptidase subuni... [more]
MPPB_RAT2.406e-4467.42Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_BOVIN4.105e-4467.42Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_MOUSE5.361e-4466.67Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_NEUCR9.144e-4459.39Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_BLAEM1.194e-4367.94Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_PONAB1.560e-4365.91Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_HUMAN1.560e-4365.91Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_LENED2.660e-4370.08Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_DICDI1.046e-3961.94Mitochondrial-processing peptidase subunit beta OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06L08_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006L08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621436 ID=DN621436; Name=DN621436; organism=Citrus sinensis; type=EST; length=673bp
GTCCAAACGATGGCGTTTAAGCATCTCCTAACCCTAGCTCGCCGGTCTCA
CAGGCCTTCGTCCACGGCCCTCTTTACCGCCATCCGATCCTCCTCCTCCG
CCTCACCCCTCGCCACGTCACCATCGTCTCCGCCGCCGTCCCCGCCTCCC
CCAAATGTCATGATCTACGACCGTCTCGCCGAAGCCGTCAAAGCCAAGCT
CAAAAACCTAGAAAACCCCGACCCGAAGTTCTTAAAGTACGGATCCCCGC
ACCCAACCCTTACTTCCCACACGCACATCCTCGCCGCGCCGGAGACCAAA
ATCACGACTTTGCCTAACGGACTCCGCGTCGCCACCGAGTCGAACCTCGC
CGCGAAGACGGCCACAGTTGGAGTTTGGATTGACGCCGGCTCGAGGTTCG
AGACTGATGAGACGAACGGGACGGCTCATTTCTTGGAGCATATGATATTC
AAGGGGACGGAGAAGCGGACTGCGAGAGATTTGGAGGAGGAGATCGAGAA
TATGGGGGGGCATTTGAATGCTTACACTAGCAGGGAACAGACGACCTATT
ATGCCAAGGTGTTGGATAAGGATGTGAATAATGCTTTGGATATTTTGGCA
GATATTTTGCAGAACTCGACGTTTGATCAAGCGAGGATCACCAGGGAACG
GGATGTTATTTTGAGAGAAATGG
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