DN621435

Overview
NameDN621435
Unique NameDN621435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig168 contig Csv1_Contig168:261..1019. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN621435 vs. ExPASy Swiss-Prot
Match: MPPB_ARATH (Probable mitochondrial-processing peptidase subunit beta OS=Arabidopsis thaliana GN=At3g02090 PE=1 SV=2)

HSP 1 Score: 322.398 bits (825), Expect = 1.668e-87
Identity = 157/182 (86.26%), Postives = 171/182 (93.96%), Query Frame = -3
Query:  212 PDSMTLMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRTYWNRY 757
            PDS+ LMVMQ MLGSWNKN  GGKH+GS+L QRV INEIAES+MAFNTNYKDTGLFGVYAVAK DCLDDL+YAIMYE TKLAYRVS+ADVTRARNQLKSSLLLH+DGTSP+AEDIGRQLLTYGRRIP AELFARID+VDASTVKRVAN++IYD+DIAI+A+GPIQ LPDYN FRRRTYWNRY
Sbjct:  350 PDSVALMVMQTMLGSWNKNVGGGKHVGSDLTQRVAINEIAESIMAFNTNYKDTGLFGVYAVAKADCLDDLSYAIMYEVTKLAYRVSDADVTRARNQLKSSLLLHMDGTSPIAEDIGRQLLTYGRRIPTAELFARIDAVDASTVKRVANKYIYDKDIAISAIGPIQDLPDYNKFRRRTYWNRY 531          
BLAST of DN621435 vs. ExPASy Swiss-Prot
Match: MPPB_MOUSE (Mitochondrial-processing peptidase subunit beta OS=Mus musculus GN=Pmpcb PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.642e-42
Identity = 81/181 (44.75%), Postives = 124/181 (68.51%), Query Frame = -3
Query:  215 PDSMTLMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRTYWNR 757
            PD++ LMV   ++G+W+++  GG ++ S+LAQ      +  S  +FNT+Y DTGL+G+Y V +   + D+ + +  E  +L   V+E++V RA+N LK+++LL +DG++P+ EDIGRQ+L Y RRIP  EL ARID+VDA TV+RV  ++I+D+  AIAA+GPI+ LPD+N       W R
Sbjct:  308 PDTICLMVANTLIGNWDRSFGGGMNLSSKLAQLTCHGNLCHSFQSFNTSYTDTGLWGLYMVCEQATVADMLHVVQNEWKRLCTDVTESEVARAKNLLKTNMLLQLDGSTPICEDIGRQMLCYNRRIPIPELEARIDAVDAETVRRVCTKYIHDKSPAIAALGPIERLPDFNQICSNMRWIR 488          
BLAST of DN621435 vs. ExPASy Swiss-Prot
Match: MPPB_PONAB (Mitochondrial-processing peptidase subunit beta OS=Pongo abelii GN=PMPCB PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.756e-42
Identity = 80/181 (44.20%), Postives = 123/181 (67.96%), Query Frame = -3
Query:  215 PDSMTLMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRTYWNR 757
            PD++ LMV   ++G+W+++  GG ++ S+LAQ      +  S  +FNT+Y DTGL+G+Y V +P  + D+ + +  E  +L   V+E++V RARN LK+++LL +DG++P+ EDIGRQ+L Y RRIP  EL ARID+V+A T++ V  ++IY+R  AIAA+GPI+ LPD+        W R
Sbjct:  308 PDTICLMVANTLIGNWDRSFGGGMNLSSKLAQLTCHGNLCHSFQSFNTSYTDTGLWGLYMVCEPSTVADMLHVVQKEWMRLCTSVTESEVARARNLLKTNMLLQLDGSTPICEDIGRQMLCYNRRIPIPELEARIDAVNAETIREVCTKYIYNRSPAIAAVGPIEQLPDFKQICSNMCWLR 488          
BLAST of DN621435 vs. ExPASy Swiss-Prot
Match: MPPB_RAT (Mitochondrial-processing peptidase subunit beta OS=Rattus norvegicus GN=Pmpcb PE=1 SV=3)

HSP 1 Score: 171.014 bits (432), Expect = 6.212e-42
Identity = 81/181 (44.75%), Postives = 122/181 (67.40%), Query Frame = -3
Query:  215 PDSMTLMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRTYWNR 757
            PD++ LMV   ++G+W+++  GG ++ S+LAQ      +  S  +FNT+Y DTGL+G+Y V +   + D+ +A+  E  +L   VSE++V RA+N LK+++LL +DG++P+ EDIGRQ+L Y RRIP  EL ARID+VDA  V+ V  ++IY +  AIAA+GPI+ LPD+N       W R
Sbjct:  308 PDTICLMVANTLIGNWDRSFGGGMNLSSKLAQLTCHGNLCHSFQSFNTSYTDTGLWGLYMVCEQATVADMLHAVQKEWMRLCTAVSESEVARAKNLLKTNMLLQLDGSTPICEDIGRQMLCYNRRIPIPELEARIDAVDAEMVREVCTKYIYGKSPAIAALGPIERLPDFNQICSNMRWTR 488          
BLAST of DN621435 vs. ExPASy Swiss-Prot
Match: MPPB_HUMAN (Mitochondrial-processing peptidase subunit beta OS=Homo sapiens GN=PMPCB PE=1 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 6.212e-42
Identity = 80/181 (44.20%), Postives = 123/181 (67.96%), Query Frame = -3
Query:  215 PDSMTLMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRTYWNR 757
            PD++ LMV   ++G+W+++  GG ++ S+LAQ      +  S  +FNT+Y DTGL+G+Y V +   + D+ + +  E  +L   V+E++V RARN LK+++LL +DG++P+ EDIGRQ+L Y RRIP  EL ARID+V+A T++ V  ++IY+R  AIAA+GPI+ LPD+   R    W R
Sbjct:  308 PDTICLMVANTLIGNWDRSFGGGMNLSSKLAQLTCHGNLCHSFQSFNTSYTDTGLWGLYMVCESSTVADMLHVVQKEWMRLCTSVTESEVARARNLLKTNMLLQLDGSTPICEDIGRQMLCYNRRIPIPELEARIDAVNAETIREVCTKYIYNRSPAIAAVGPIKQLPDFKQIRSNMCWLR 488          
BLAST of DN621435 vs. ExPASy Swiss-Prot
Match: MPPB_BOVIN (Mitochondrial-processing peptidase subunit beta OS=Bos taurus GN=PMPCB PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.384e-41
Identity = 77/179 (43.02%), Postives = 122/179 (68.16%), Query Frame = -3
Query:  221 PDSMTLMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRTYW 757
            PD++ LMV   ++G+W+++  GG ++ S+LAQ      +  S  +FNT+Y DTGL+G+Y V +P  + D+ + +  E  +L   V+E++V RA+N LK+++LL +DG++P+ EDIGRQ+L Y RRIP  EL ARID+V+A  ++ V  ++IYD+  A+AA+GPI+ LPD+N       W
Sbjct:  309 PDTICLMVANTLIGNWDRSFGGGMNLSSKLAQLTCHGNLCHSFQSFNTSYTDTGLWGIYMVCEPATVADMLHVVQKEWMRLCTSVTESEVARAKNLLKTNMLLQLDGSTPICEDIGRQMLCYNRRIPIPELEARIDAVNAEIIREVCTKYIYDKSPAVAAVGPIEQLPDFNQICSNMRW 487          
BLAST of DN621435 vs. ExPASy Swiss-Prot
Match: MPPB_BLAEM (Mitochondrial-processing peptidase subunit beta OS=Blastocladiella emersonii GN=MPP1 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.814e-40
Identity = 90/182 (49.45%), Postives = 121/182 (66.48%), Query Frame = -3
Query:  212 DSMTLMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKP-DCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRTYWNRY 754
            D   L+V  AM+GS+++ + G  H  S+LAQ V  + +A S  +FNT Y DTGL+G+Y  +   D LDDLA+  + E  +LA   SE +V  A+ QLK+SLLL +DGT+PVAE+IGRQ+L YGRR+   E+   +D+V    VKRVAN FIYDRD+AI A+GP++ LPDYN  R      RY
Sbjct:  285 DHWPLLVASAMIGSYDR-AAGNAHPSSKLAQIVAKHNLANSFTSFNTTYSDTGLWGIYIQSNNRDNLDDLAHFTVREWMRLATAPSEGEVAIAKQQLKTSLLLALDGTTPVAEEIGRQMLAYGRRLSPFEIDRLVDAVTVEDVKRVANEFIYDRDLAIVAVGPVECLPDYNRIRSAMNLLRY 465          
BLAST of DN621435 vs. ExPASy Swiss-Prot
Match: QCR1_MOUSE (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Mus musculus GN=Uqcrc1 PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 6.428e-39
Identity = 76/182 (41.76%), Postives = 116/182 (63.74%), Query Frame = -3
Query:  212 PDSMTLMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRTYWNRY 757
            PD++TL V  A++G ++    GG H+ S LA     N++ +S   FN +Y DTGL G + V     +DD+ + +  +  +L    +E++VTR +N L+++L+ H+DGT+PV EDIGR LLTYGRRIP AE  +RI  VDA  ++ + +++ YD+  A+A  GPI+ LPDYN  R   +W R+
Sbjct:  299 PDNVTLQVANAIIGHYDCTCGGGVHLSSPLASVAVANKLCQSFQTFNISYSDTGLLGAHFVCDAMSIDDMVFFLQGQWMRLCTSATESEVTRGKNILRNALVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIQEVDAQMLRDICSKYFYDQCPAVAGYGPIEQLPDYNRIRSGMFWLRF 480          
BLAST of DN621435 vs. ExPASy Swiss-Prot
Match: QCR1_BOVIN (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Bos taurus GN=UQCRC1 PE=1 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 4.167e-38
Identity = 76/182 (41.76%), Postives = 113/182 (62.09%), Query Frame = -3
Query:  212 PDSMTLMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRTYWNRY 757
            PD++ L V  A++G ++    GG H+ S LA     N++ +S   FN  Y DTGL G + V     +DD+ + +  +  +L    +E++V R +N L+++L+ H+DGT+PV EDIGR LLTYGRRIP AE  +RI  VDA  V+ V +++ YD+  A+A  GPI+ LPDYN  R   +W R+
Sbjct:  299 PDNVALQVANAIIGHYDCTYGGGAHLSSPLASIAATNKLCQSFQTFNICYADTGLLGAHFVCDHMSIDDMMFVLQGQWMRLCTSATESEVLRGKNLLRNALVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEVDARVVREVCSKYFYDQCPAVAGFGPIEQLPDYNRIRSGMFWLRF 480          
BLAST of DN621435 vs. ExPASy Swiss-Prot
Match: QCR1_RAT (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Rattus norvegicus GN=Uqcrc1 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 9.282e-38
Identity = 75/182 (41.21%), Postives = 115/182 (63.19%), Query Frame = -3
Query:  212 PDSMTLMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRTYWNRY 757
            PD++ L V  A++G ++    GG H+ S LA     N++ +S   FN +Y +TGL G + V     +DD+ + +  +  +L    +E++VTR +N L+++L+ H+DGT+PV EDIGR LLTYGRRIP AE  +RI+ VDA  V+ V +++ YD+  A+A  GPI+ L DYN  R   +W R+
Sbjct:  299 PDNVALQVANAIIGHYDCTYGGGVHLSSPLASVAVANKLCQSFQTFNISYSETGLLGAHFVCDAMSIDDMIFFLQGQWMRLCTSATESEVTRGKNILRNALISHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIEEVDAQMVREVCSKYFYDQCPAVAGYGPIEQLSDYNRIRSGMFWLRF 480          
The following BLAST results are available for this feature:
BLAST of DN621435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
MPPB_ARATH1.668e-8786.26Probable mitochondrial-processing peptidase subuni... [more]
MPPB_MOUSE3.642e-4244.75Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_PONAB4.756e-4244.20Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_RAT6.212e-4244.75Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_HUMAN6.212e-4244.20Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_BOVIN1.384e-4143.02Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_BLAEM5.814e-4049.45Mitochondrial-processing peptidase subunit beta OS... [more]
QCR1_MOUSE6.428e-3941.76Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
QCR1_BOVIN4.167e-3841.76Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
QCR1_RAT9.282e-3841.21Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06L08_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006L08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621435 ID=DN621435; Name=DN621435; organism=Citrus sinensis; type=EST; length=759bp
CCCTTTTTTTTGGAGAGTGAAGACAGCTTACTTATTTCCTGAACAAATTA
TGAAGTTACAGAAGCAAGAGCTAGAAAAGAATTCAATAAAATACCATAGC
CCTGAAGCCTCTCCCAAGGGCATTGATTGTGTAAATTGCAACCCAAAAAT
TGTTTGAAATCTCCGCCCAGGAAGGCGGGGATGCAGTAATGAACAACCAT
GAGATAACTTAGTATCTATTCCAGTAGGTTCTGCGTCTGAACCAGTTGTA
GTCGGGTAAACCTTGAATTGGACCCATTGCAGCAATTGCGATATCCCTGT
CGTAAATAAATCTGTTTGCAACGCGCTTGACAGTGCTTGCATCTACGGAG
TCTATCCTAGCAAACAATTCAGCAAATGGGATTCTTCGACCATATGTAAG
CAGCTGGCGTCCAATATCTTCAGCTACAGGGCTTGTTCCATCAATGTGAA
GCAACAGGGATGATTTCAACTGATTACGGGCACGAGTGACATCAGCTTCT
GAAACCCGATAAGCTAACTTGGTAGTCTCGTACATAATTGCATAGGCCAA
ATCATCTAAGCAATCCGGCTTAGCAACAGCATAAACACCAAACAGACCAG
TGTCTTTGTAGTTCGTGTTGAAGGCCATCATGCTTTCTGCAATTTCATTA
ATGCCAACTCTCTGTGCCAGCTCGGAACCCATGTGCTTTCCACCCACTGA
ATTTTTATTCCATGAACCCAACATTGCCTGCATAACCATCAAGGTCATTG
AATCTGGAT
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