DN621427

Overview
NameDN621427
Unique NameDN621427
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5872 contig Csv1_Contig5872:96..841. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN621427 vs. ExPASy Swiss-Prot
Match: PDCD2_RAT (Programmed cell death protein 2 (Fragment) OS=Rattus norvegicus GN=Pdcd2 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.305e-28
Identity = 69/205 (33.66%), Postives = 100/205 (48.78%), Query Frame = -3
Query:  127 CRRAHYCQQKHQVTHWRSGHKVECQKLXXXXXXXXXXXXXAGTTSVASNSLWPEYEMINEDESEYDTEMSEVNGQTNALVSKTGVDDTMKSLLDSFEGDSDRRSWATFQEHVAKAPEQVLRYCRSAGAKALWPTSSGQLSKADIPKCSYCGGPRCFEFQILPQLLFYFGVSNDVDSLDWATMVVYTCESSCEANVSYKEEFVWVQ 741
            C++AHYC ++HQ   W+ GHK  C +                      N L+PE+E++ E E E   E+ E+   +  + S  GV +     +   E   D   +  F+  +A  PEQ+LRY R  G K +W +      + DIP CS CG  R FEFQ++PQLL +        S+DW  + V+TC  SC   + + EEFVW Q
Sbjct:   92 CKQAHYCSKEHQTLDWQLGHKQACTQSDHLDHMVPDH-----------NLLFPEFEIVTETEDEIGPEVVEMEDYSEVIGSMEGVPEEELDSMAKHESKEDH-IFQKFKSKIALEPEQILRYGR--GIKPIWISGENIPQEKDIPDCS-CGVKRIFEFQVMPQLLNHLKADRLGTSVDWGILAVFTCAESCSLGIGFTEEFVWKQ 281          
BLAST of DN621427 vs. ExPASy Swiss-Prot
Match: PDCD2_MOUSE (Programmed cell death protein 2 OS=Mus musculus GN=Pdcd2 PE=2 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 6.474e-28
Identity = 69/205 (33.66%), Postives = 97/205 (47.32%), Query Frame = -3
Query:  127 CRRAHYCQQKHQVTHWRSGHKVECQKLXXXXXXXXXXXXXAGTTSVASNSLWPEYEMINEDESEYDTEMSEVNGQTNALVSKTGVDDTMKSLLDSFEGDSDRRSWATFQEHVAKAPEQVLRYCRSAGAKALWPTSSGQLSKADIPKCSYCGGPRCFEFQILPQLLFYFGVSNDVDSLDWATMVVYTCESSCEANVSYKEEFVWVQ 741
            C++AHYC ++HQ   WR GHK  C +                      N L+PE+E++ E E E   E+ E+   +    S  G+ +     +   E   D   +  F+  +A  PEQ+LRY R  G K +W +      + DIP C  CG  R FEFQ++PQLL +        S+DW  + V+TC  SC     Y EEFVW Q
Sbjct:  148 CKQAHYCSKEHQTLDWRLGHKQACTQSDKIDHMVPDH-----------NFLFPEFEIVTETEDEILPEVVEMEDYSEVTGSMGGIPEEELDSMAKHESKEDH-IFQKFKSKIALEPEQILRYGR--GIKPIWISGENIPQEKDIPDCP-CGAKRIFEFQVMPQLLNHLKADRLGRSIDWGVLAVFTCAESCSLGSGYTEEFVWKQ 337          
BLAST of DN621427 vs. ExPASy Swiss-Prot
Match: PDCD2_BOVIN (Programmed cell death protein 2 OS=Bos taurus GN=PDCD2 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.481e-27
Identity = 67/205 (32.68%), Postives = 98/205 (47.80%), Query Frame = -3
Query:  127 CRRAHYCQQKHQVTHWRSGHKVECQKLXXXXXXXXXXXXXAGTTSVASNSLWPEYEMINEDESEYDTEMSEVNGQTNALVSKTGVDDTMKSLLDSFEGDSDRRSWATFQEHVAKAPEQVLRYCRSAGAKALWPTSSGQLSKADIPKCSYCGGPRCFEFQILPQLLFYFGVSNDVDSLDWATMVVYTCESSCEANVSYKEEFVWVQ 741
            C +AHYC ++HQ   WR GHK  C +                      N L+PE+E++ E E E   E+ E + ++  + +     +     +   E   DR  +  F+  ++  PEQ+LRY R  G   LW +      + DIP C  CG  R FEFQ++PQLL Y        S+DW  + ++TC  SC+  + Y EEFVW Q
Sbjct:  149 CHKAHYCSKEHQSLDWRLGHKQACAQTDNLDNIVPDH-----------NFLFPEFEIVIETEDEIMPEVVERDDESEIIGTMGEAHEEELESMAKHESKEDR-IFRKFKTKISLEPEQILRYGR--GIAPLWISGENTPKEKDIPDCP-CGAKRLFEFQVMPQLLNYLKADRLGRSVDWGVLAIFTCAESCKLGIGYTEEFVWKQ 338          
BLAST of DN621427 vs. ExPASy Swiss-Prot
Match: PDCD2_HUMAN (Programmed cell death protein 2 OS=Homo sapiens GN=PDCD2 PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.763e-25
Identity = 68/207 (32.85%), Postives = 96/207 (46.38%), Query Frame = -3
Query:  127 CRRAHYCQQKHQVTHWRSGHKVECQKLXXXXXXXXXXXXXAGTTSVASNSLWPEYEMINEDESEYDTEMSEVNGQTNALVSKTGVDDTMKSLLDSFEGDSDRRS--WATFQEHVAKAPEQVLRYCRSAGAKALWPTSSGQLSKADIPKCSYCGGPRCFEFQILPQLLFYFGVSNDVDSLDWATMVVYTCESSCEANVSYKEEFVWVQ 741
            C +A+YC ++HQ   WR GHK  C +                      N L+PE+E++ E E E   E+ E    +  + S   + + ++  LDS      R    +  F+  +A  PEQ+LRY R  G   +W +      + DIP C  CG  R  EFQ++PQLL Y        S+DW  + V+TC  SC     Y EEFVW Q
Sbjct:  149 CHKAYYCSKEHQTLDWRLGHKQACAQPDHLDHIIPDH-----------NFLFPEFEIVIETEDEIMPEVVEKEDYSEIIGS---MGEALEEELDSMAKHESREDKIFQKFKTQIALEPEQILRYGR--GIAPIWISGENIPQEKDIPDCP-CGAKRILEFQVMPQLLNYLKADRLGKSIDWGILAVFTCAESCSLGTGYTEEFVWKQ 338          
BLAST of DN621427 vs. ExPASy Swiss-Prot
Match: YA99_SCHPO (Uncharacterized protein C13G6.09 OS=Schizosaccharomyces pombe GN=SPAC13G6.09 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.883e-13
Identity = 46/154 (29.87%), Postives = 76/154 (49.35%), Query Frame = -3
Query:  127 EMINEDESEYDTEMSEVNGQTNALVSKTGVDDTMKSLLDSFEGDSDRRSWATFQEHVAKAPEQVLRYCRSAGAK--ALWPTSSGQLSKADIPKCSYCGGPRCFEFQILPQLLFYFGVSNDV-DSLDWATMVVYTCESSCE-ANVSYKEEFVWVQ 576
            ++I+  E E D E  E N +      K    DT     + +       S+  FQ+ +++AP+Q++RY  +   +   LW   + +   + IP C+ CG  R  EFQILP L+    + +   ++LDW  + +Y C +SC+ AN    EE  W+Q
Sbjct:  113 KLIDSSEIEVDAEPKEENKKEIPEKLKNVKVDTENPSAEPYTKAKGDVSFLKFQKRLSRAPDQIMRYYHATSNEFPGLW--CNNECIPSSIPNCA-CGAKRQLEFQILPTLISSMNIDHSAKNALDWGILSIYVCSASCDLANCGLAEELCWLQ 263          
The following BLAST results are available for this feature:
BLAST of DN621427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PDCD2_RAT1.305e-2833.66Programmed cell death protein 2 (Fragment) OS=Ratt... [more]
PDCD2_MOUSE6.474e-2833.66Programmed cell death protein 2 OS=Mus musculus GN... [more]
PDCD2_BOVIN5.481e-2732.68Programmed cell death protein 2 OS=Bos taurus GN=P... [more]
PDCD2_HUMAN1.763e-2532.85Programmed cell death protein 2 OS=Homo sapiens GN... [more]
YA99_SCHPO5.883e-1329.87Uncharacterized protein C13G6.09 OS=Schizosaccharo... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_06L04_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006L04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621427 ID=DN621427; Name=DN621427; organism=Citrus sinensis; type=EST; length=746bp
TTTTTTTTTTTGAACTATGAAAAGCCAGACAAAATTTTCATTCAAGCAAA
ATTTTACTCCAAGGAGGAACATCTTTTCCTCGACCAAATAAATGCTTCGC
CATCAAGGCACAGATGACAAAGAATGCTGAACCCAAACAAATTCCTCTTT
GTAACTCACATTTGCCTCGCAAGAGCTTTCACACGTGTATACGACCATTG
TCGCCCAATCAAGAGAATCCACATCATTACTTACACCAAAGTAAAAAAGC
AACTGAGGTAATATCTGAAATTCAAAACACCTAGGACCGCCACAGTAGCT
GCATTTAGGGATATCAGCCTTAGATAGTTGGCCACTTGATGTAGGCCATA
GAGCTTTCGCACCAGCGCTCCTACAATACCTTAATACTTGTTCAGGGGCT
TTGGCTACATGCTCTTGAAAAGTGGCCCAACTCCTTCGATCACTGTCTCC
CTCAAAACTGTCCAACAACGATTTCATTGTATCATCAACTCCTGTCTTAG
AAACCAATGCATTGGTTTGTCCATTCACTTCAGACATTTCTGTATCGTAT
TCACTTTCATCCTCGTTTATCATCTCATATTCTGGCCACAGGCTATTGCT
TGCAACTGAAGTGGTTCCAGCATCTGCAAGGTTAGAATCAGATGATGGAG
AAGAAAGGTTGAGCTTTTGACATTCAACTTTATGACCTGATCGCCAGTGG
GTGACCTGGTGTTTCTGTTGGCAATAATGAGCTCTCCTACAGCTAC
back to top