DN621422

Overview
NameDN621422
Unique NameDN621422
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length642
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12513 contig Csv1_Contig12513:611..1252. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN621422 vs. ExPASy Swiss-Prot
Match: HDDC2_BOVIN (HD domain-containing protein 2 OS=Bos taurus GN=HDDC2 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.516e-12
Identity = 41/102 (40.20%), Postives = 61/102 (59.80%), Query Frame = -1
Query:  340 RMEQEALNEMCKVLGGGMRAEEIQELWAEYENNASIEANLVKDFDKVEMILQALEYEMEHGKV--LDEFFLSTAGKFQTEIGKRWAAEINSRRNSRLANKLS 639
            R E+EA+ ++ ++L   ++ +E+ ELW EYE  +S EA  VK  D+ EMILQA EYE    K   L +F+ STAGKF      +  +E+ + RN+ +A   S
Sbjct:  101 RREEEAMKQLTQLLPEDLQ-KELYELWEEYETQSSAEAKFVKQLDQCEMILQASEYEDLENKPGRLQDFYDSTAGKFSHPEIVQLVSELEAERNANIAGAAS 201          
BLAST of DN621422 vs. ExPASy Swiss-Prot
Match: HDDC2_MOUSE (HD domain-containing protein 2 OS=Mus musculus GN=Hddc2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.453e-11
Identity = 41/98 (41.84%), Postives = 60/98 (61.22%), Query Frame = -1
Query:  352 RMEQEALNEMCKVLGGGMRAEEIQELWAEYENNASIEANLVKDFDKVEMILQALEYEMEHGKV--LDEFFLSTAGKFQTEIGKRWAAEINSRRNSRLA 639
            R E+EA+ ++ ++L   +R +E+ ELW EYE  +S EA  VK  D+ EMILQA EYE    K   L +F+ STAGKF      +  +E+ + RN+ +A
Sbjct:   95 RREEEAMKQITQLLPEDLR-KELYELWEEYETQSSEEAKFVKQLDQCEMILQASEYEDLENKPGRLQDFYDSTAGKFSHPEIVQLVSELETERNASMA 191          
BLAST of DN621422 vs. ExPASy Swiss-Prot
Match: HDDC2_HUMAN (HD domain-containing protein 2 OS=Homo sapiens GN=HDDC2 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.453e-11
Identity = 42/99 (42.42%), Postives = 64/99 (64.65%), Query Frame = -1
Query:  352 RMEQEALNEMCKVLGGGMRAEEIQELWAEYENNASIEANLVKDFDKVEMILQALEYE-MEH--GKVLDEFFLSTAGKFQTEIGKRWAAEINSRRNSRLA 639
            R E+EA+ ++ ++L   +R +E+ ELW EYE  +S EA  VK  D+ EMILQA EYE +EH  G+ L +F+ STAGKF      +  +E+ + R++ +A
Sbjct:  100 RREEEAMKQITQLLPEDLR-KELYELWEEYETQSSAEAKFVKQLDQCEMILQASEYEDLEHKPGR-LQDFYDSTAGKFNHPEIVQLVSELEAERSTNIA 196          
BLAST of DN621422 vs. ExPASy Swiss-Prot
Match: HDDC2_DICDI (HD domain-containing protein 2 homolog OS=Dictyostelium discoideum GN=hddc2 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.478e-11
Identity = 43/96 (44.79%), Postives = 58/96 (60.42%), Query Frame = -1
Query:  367 RMEQEALNEMCKVLGGGMRAEEIQELWAEYENNASIEANLVKDFDKVEMILQALEYE-----MEHGKVLDEFFLSTAGKFQTEIGKRWAAEINSRR 639
            ++E+ A+ E+   L G +  +EI +LW EYE+  + EA LVKDFDK EMILQA EYE     +E+   L  FF ST GKF   + K  A ++ S R
Sbjct:   95 QLEKNAIIEITNTLSGEV-GKEIFDLWQEYEDCKTNEALLVKDFDKFEMILQAYEYEKQPHQLENKIKLQSFFDSTRGKFHHPLFKSLALQLESDR 189          
BLAST of DN621422 vs. ExPASy Swiss-Prot
Match: HDDC2_DANRE (HD domain-containing protein 2 OS=Danio rerio GN=hddc2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.478e-11
Identity = 39/77 (50.65%), Postives = 51/77 (66.23%), Query Frame = -1
Query:  415 RMEQEALNEMCKVLGGGMRAEEIQELWAEYENNASIEANLVKDFDKVEMILQALEYEMEHGKV--LDEFFLSTAGKF 639
            R E++A+  +  +L  G+R +EI  LW EYE  +S EA LVK+ D +EMI+QA EYE   GK   L EFF+ST GKF
Sbjct:   87 RREKDAMVHITGLLDDGLR-KEIYNLWEEYETQSSPEAKLVKELDNLEMIIQAHEYEELEGKPGRLQEFFVSTEGKF 162          
The following BLAST results are available for this feature:
BLAST of DN621422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
HDDC2_BOVIN8.516e-1240.20HD domain-containing protein 2 OS=Bos taurus GN=HD... [more]
HDDC2_MOUSE1.453e-1141.84HD domain-containing protein 2 OS=Mus musculus GN=... [more]
HDDC2_HUMAN1.453e-1142.42HD domain-containing protein 2 OS=Homo sapiens GN=... [more]
HDDC2_DICDI2.478e-1144.79HD domain-containing protein 2 homolog OS=Dictyost... [more]
HDDC2_DANRE2.478e-1150.65HD domain-containing protein 2 OS=Danio rerio GN=h... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_06L01_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006L01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621422 ID=DN621422; Name=DN621422; organism=Citrus sinensis; type=EST; length=642bp
TTTTTAACTACTAACAATTATAATTCCACTGCTAACCCCAAAAAAAAGTT
AAAAAAAATTACTACATGCTTGTCTGATTAAAAGTCAGTATCAGCAGGAT
ATAGAAGCTGCTATGTTGAATTTCCAGATTTTAACAGCTTTTCTTATCCA
GTAGTCGCCAATGGAAGCTCCTTTCGGGTTGCTTCTAGATAAAAAGTCAG
TAGTTGACCTACTCAAATAAAGAGGGAAGACGAACAAGGTTCGCCTACCT
AGAGGACGGTTCTCAGTCCTGTGATTACCACTCAAAAAAGTTTGGTTTGG
CTTCACTTGGCAAAGAACCATGACCAGACCACGAGATCAACTGAGTTTGT
TCGCCAACCTTGAGTTTCTTCTTGAATTGATCTCGGCTGCCCAACGCTTT
CCTATTTCTGTCTGAAATTTTCCTGCTGTGGAAAGGAAAAACTCATCCAG
CACCTTCCCATGCTCCATTTCATACTCCAATGCCTGCAAAATCATCTCAA
CTTTGTCAAAATCTTTCACAAGATTAGCTTCTATGGAGGCATTATTTTCA
TACTCCGCCCATAATTCTTGGATCTCTTCAGCCCTCATCCCTCCGCCAAG
AACTTTGCACATTTCATTTAAAGCTTCCTGCTCCATTCTGCT
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