DN621420

Overview
NameDN621420
Unique NameDN621420
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length501
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN621420_ssr22 microsatellite DN621420_ssr22:22..51. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1856 contig Csv1_Contig1856:916..1416. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: GOX2_ARATH (Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 OS=Arabidopsis thaliana GN=At3g14420 PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.087e-43
Identity = 86/103 (83.50%), Postives = 94/103 (91.26%), Query Frame = -2
Query:  192 TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVTHWDTPGAVARL 500
            T+ ALEEVV+A +GR+PVFLDGGVRRGTDVFKALALGASG+F+GRPV FSLA +GEAGVRKVLQMLRDEFELTMALSGCRSLKEI+RNHI T WDTP   ARL
Sbjct:  265 TISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTEWDTPRPSARL 367          
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: GOX1_ARATH (Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 OS=Arabidopsis thaliana GN=At3g14415 PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 4.129e-43
Identity = 85/103 (82.52%), Postives = 94/103 (91.26%), Query Frame = -2
Query:  192 TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVTHWDTPGAVARL 500
            T+ ALEEVV+A +GRVPVFLDGGVRRGTDVFKALALGASG+F+GRPV F+LA +GEAGV+KVLQMLRDEFELTMALSGCRSL EITRNHIVT WDTP  + RL
Sbjct:  265 TISALEEVVKATQGRVPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFALAAEGEAGVKKVLQMLRDEFELTMALSGCRSLSEITRNHIVTEWDTPRHLPRL 367          
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: GOX_SPIOL (Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 5.963e-42
Identity = 85/105 (80.95%), Postives = 96/105 (91.43%), Query Frame = -2
Query:  192 TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVTHWDTPG--AVARL 500
            T+MALEEVV+AA+GR+PVFLDGGVRRGTDVFKALALGA+GVF+GRPV FSLA +GEAGV+KVLQM+RDEFELTMALSGCRSLKEI+R+HI   WD P   AVARL
Sbjct:  265 TIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLAAEGEAGVKKVLQMMRDEFELTMALSGCRSLKEISRSHIAADWDGPSSRAVARL 369          
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: HAOX1_HUMAN (Hydroxyacid oxidase 1 OS=Homo sapiens GN=HAO1 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.249e-23
Identity = 52/87 (59.77%), Postives = 69/87 (79.31%), Query Frame = -2
Query:  240 TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITR 500
            T+  L E+V+A +G+V VFLDGGVR+GTDV KALALGA  VFVGRP+ + LA  GE GV+ VL++L++EF L MALSGC+++K I +
Sbjct:  271 TIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVWGLAFQGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDK 357          
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: HAOX1_MOUSE (Hydroxyacid oxidase 1 OS=Mus musculus GN=Hao1 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.631e-23
Identity = 52/87 (59.77%), Postives = 69/87 (79.31%), Query Frame = -2
Query:  240 TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITR 500
            T+  L E+V+A +G+V VFLDGGVR+GTDV KALALGA  VFVGRP+ + LA  GE GV+ VL++L++EF L MALSGC+++K I +
Sbjct:  271 TIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPIIWGLAFQGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDK 357          
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: HAOX2_HUMAN (Hydroxyacid oxidase 2 OS=Homo sapiens GN=HAO2 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.077e-22
Identity = 51/88 (57.95%), Postives = 67/88 (76.14%), Query Frame = -2
Query:  237 TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRN 500
            ++ AL EVV A KG++ V+LDGGVR G DV KALALGA  +F+GRP+ + LA  GE GV++VL +L +EF  +MAL+GCRS+ EI RN
Sbjct:  257 SIDALTEVVAAVKGKIEVYLDGGVRTGNDVLKALALGAKCIFLGRPILWGLACKGEHGVKEVLNILTNEFHTSMALTGCRSVAEINRN 344          
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: HAOX2_BOVIN (Hydroxyacid oxidase 2 OS=Bos taurus GN=HAO2 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.169e-21
Identity = 51/90 (56.67%), Postives = 68/90 (75.56%), Query Frame = -2
Query:  231 TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHI 500
            ++ AL EVV A KG+V V+LDGG+R G DV KALALGA  VFVGRP+ + LA  GE GV++VL +L++EF  +M L+GCRS+ EI ++ I
Sbjct:  259 SIDALTEVVAAVKGKVEVYLDGGIRTGNDVLKALALGAKCVFVGRPILWGLAYKGEHGVKEVLDILKNEFHTSMTLTGCRSVAEINQDLI 348          
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: HAOX2_MOUSE (Hydroxyacid oxidase 2 OS=Mus musculus GN=Hao2 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.761e-20
Identity = 47/86 (54.65%), Postives = 64/86 (74.42%), Query Frame = -2
Query:  243 TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEIT 500
            ++ AL EVV A  G++ V++DGGVR G DV KALALGA  +F+GRP+ + LA  GE GV++VL +L++E    MALSGCRS+ EI+
Sbjct:  259 SIDALREVVAAVNGKIEVYMDGGVRTGNDVLKALALGARCIFLGRPIIWGLACKGEDGVKEVLDILKEELHTCMALSGCRSVAEIS 344          
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: HAOX2_RAT (Hydroxyacid oxidase 2 OS=Rattus norvegicus GN=Hao2 PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.867e-19
Identity = 47/86 (54.65%), Postives = 63/86 (73.26%), Query Frame = -2
Query:  243 TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEIT 500
            ++ AL EVV A KG++ V++DGGVR GTDV KALALGA  +F+GRP+ + LA  GE GV++VL +L  E    M LSGC+S+ EI+
Sbjct:  259 SIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLGRPILWGLACKGEDGVKEVLDILTAELHRCMTLSGCQSVAEIS 344          
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: HAOX_DICDI (Hydroxyacid oxidase OS=Dictyostelium discoideum GN=haox PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 7.842e-18
Identity = 44/95 (46.32%), Postives = 63/95 (66.32%), Query Frame = -2
Query:  216 TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVTHWD 500
            T+  L  + +  +GRVP+ LDGG+RRGTDV KALA GA+ V +GRP+ + L+  G+ GV KVL +L  E +L MAL+G  ++ +I  + I   WD
Sbjct:  290 TIEVLPYISKVVRGRVPLILDGGIRRGTDVLKALAFGANAVCIGRPIIWGLSTGGKDGVLKVLNLLNSELQLAMALTGITNISDINNSII---WD 381          
The following BLAST results are available for this feature:
BLAST of DN621420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
GOX2_ARATH1.087e-4383.50Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 ... [more]
GOX1_ARATH4.129e-4382.52Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 ... [more]
GOX_SPIOL5.963e-4280.95Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia... [more]
HAOX1_HUMAN1.249e-2359.77Hydroxyacid oxidase 1 OS=Homo sapiens GN=HAO1 PE=1... [more]
HAOX1_MOUSE1.631e-2359.77Hydroxyacid oxidase 1 OS=Mus musculus GN=Hao1 PE=2... [more]
HAOX2_HUMAN3.077e-2257.95Hydroxyacid oxidase 2 OS=Homo sapiens GN=HAO2 PE=2... [more]
HAOX2_BOVIN1.169e-2156.67Hydroxyacid oxidase 2 OS=Bos taurus GN=HAO2 PE=2 S... [more]
HAOX2_MOUSE3.761e-2054.65Hydroxyacid oxidase 2 OS=Mus musculus GN=Hao2 PE=2... [more]
HAOX2_RAT1.867e-1954.65Hydroxyacid oxidase 2 OS=Rattus norvegicus GN=Hao2... [more]
HAOX_DICDI7.842e-1846.32Hydroxyacid oxidase OS=Dictyostelium discoideum GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06K24_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006K24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621420 ID=DN621420; Name=DN621420; organism=Citrus sinensis; type=EST; length=501bp
TTTTTTTTTTTTTTAAAAGCCCCAAGCCAAGCCAAGCCAAGCCAAGCCAA
GCCGCACCTCCCTTTATTTAATTAATTCATACATCCTTGTCGTCTTAACA
ATATCCTAATCCCTGAATCCGGGATTAGGTTATTCGAATCACAGTTGTTT
AAAAATGAAAAGTTTTAATGTTGATGTTGGAGACCATCTTACAATCTGGC
TACAGCTCCTGGAGTGTCCCAATGAGTCACAATGTGGTTGCGTGTAATCT
CCTTGAGCGAACGGCACCCACTTAATGCCATTGTTAGCTCAAACTCATCA
CGAAGCATCTGAAGCACTTTTCTCACACCAGCCTCTCCATCAACTGCCAG
CGAGAATGGTACTGGCCTTCCAACAAATACTCCAGATGCTCCTAGAGCCA
AAGCCTTGAAGACATCGGTTCCACGACGAACCCCACCATCAAGGAAAACA
GGAACTCGGCCTTTTGCAGCTTGAACAACCTCTTCCAAAGCCATAACAGT
T
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