DN621411
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN621411 vs. ExPASy Swiss-Prot
Match: R18A2_ARATH (60S ribosomal protein L18a-2 OS=Arabidopsis thaliana GN=RPL18AB PE=1 SV=2) HSP 1 Score: 203.756 bits (517), Expect = 8.522e-52 Identity = 96/110 (87.27%), Postives = 101/110 (91.82%), Query Frame = -1 Query: 188 KEPNKDKELRIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLRTTYKASRPNLFM 517 K P K IWLRYQSRTGYHNMYKEYRDTTLNGAVEQMY EMASRHRVR PCIQIIKTAT+PAKLCKRESTKQFHNSKIKFPLVFRKVRPP+RKL+TTYKA++PNLFM Sbjct: 69 KNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLKTTYKANKPNLFM 178 HSP 2 Score: 144.436 bits (363), Expect = 6.136e-34 Identity = 68/78 (87.18%), Postives = 72/78 (92.31%), Query Frame = -2 Query: 487 MVTFRFHQYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYG 720 M FRFHQYQVVGRALPTE D PKIYRMKLWATNEVRAKSKFWY+LRKLKKVKKSNGQ+LAINEI+EKNPT IKN+G Sbjct: 1 MGAFRFHQYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIYEKNPTTIKNFG 78
BLAST of DN621411 vs. ExPASy Swiss-Prot
Match: R18A3_ARATH (60S ribosomal protein L18a-3 OS=Arabidopsis thaliana GN=RPL18AC PE=2 SV=1) HSP 1 Score: 201.445 bits (511), Expect = 4.230e-51 Identity = 96/112 (85.71%), Postives = 100/112 (89.29%), Query Frame = -1 Query: 188 F*KEPNKDKELRIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLRTTYKASRPNLFM 523 F K P K IWLRYQSRTGYHNMYKEYRDTTLNG VEQMY EMASRHRVR PCIQIIKTAT+PAKLCKRE TKQFHNSKIKFPLVFRKVRPP+RKL+TTYKAS+PNLFM Sbjct: 67 FEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFPCIQIIKTATVPAKLCKREITKQFHNSKIKFPLVFRKVRPPSRKLKTTYKASKPNLFM 178 HSP 2 Score: 144.821 bits (364), Expect = 4.698e-34 Identity = 67/75 (89.33%), Postives = 70/75 (93.33%), Query Frame = -2 Query: 487 FRFHQYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYG 711 FRFHQYQVVGRALPTE DEHPKIYRMKLW NEV AKSKFWY++RKLKKVKKSNGQ+LAINEIFEKNPT IKNYG Sbjct: 4 FRFHQYQVVGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQMLAINEIFEKNPTTIKNYG 78
BLAST of DN621411 vs. ExPASy Swiss-Prot
Match: RL18A_CASSA (60S ribosomal protein L18a OS=Castanea sativa GN=RPL18A PE=2 SV=1) HSP 1 Score: 200.29 bits (508), Expect = 9.423e-51 Identity = 97/112 (86.61%), Postives = 101/112 (90.18%), Query Frame = -1 Query: 188 F*KEPNKDKELRIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLRTTYKASRPNLFM 523 F K P K K IWLRYQSRTGYHNMYKEYRDTTLNGAVEQMY EMASRHRVR PCIQIIKTATIPAKLCKRES+KQFHNSKIKFPLV RK+RPP+RKL+T YKASRPNLFM Sbjct: 67 FEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYIEMASRHRVRFPCIQIIKTATIPAKLCKRESSKQFHNSKIKFPLVTRKIRPPSRKLKTHYKASRPNLFM 178 HSP 2 Score: 159.073 bits (401), Expect = 2.407e-38 Identity = 74/78 (94.87%), Postives = 77/78 (98.72%), Query Frame = -2 Query: 487 MVTFRFHQYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYG 720 MVTFRFHQYQVVGR LP+ETDEHPKIYRMKLWATNEVRAKSKFWY+LRKLKKVKKSNGQ+LAINEIFEKNPTKIKNYG Sbjct: 1 MVTFRFHQYQVVGRGLPSETDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYG 78
BLAST of DN621411 vs. ExPASy Swiss-Prot
Match: RL18A_ORYSJ (60S ribosomal protein L18a OS=Oryza sativa subsp. japonica GN=RPL18A PE=2 SV=1) HSP 1 Score: 192.586 bits (488), Expect = 1.965e-48 Identity = 92/112 (82.14%), Postives = 98/112 (87.50%), Query Frame = -1 Query: 188 F*KEPNKDKELRIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLRTTYKASRPNLFM 523 F K P K IWLRYQSRTGYHNMYKEYRDTTLNGAVEQMY EMASRHRVR PCIQIIKTAT+ KLCKR++TKQFH S IKFPLV+RKVRPPTRKL+TT+KASRPNLFM Sbjct: 67 FEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHKSDIKFPLVYRKVRPPTRKLKTTFKASRPNLFM 178 HSP 2 Score: 152.14 bits (383), Expect = 2.943e-36 Identity = 71/78 (91.03%), Postives = 73/78 (93.59%), Query Frame = -2 Query: 487 MVTFRFHQYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYG 720 M FRFHQYQVVGR LPT TDEHPKIYRMKLWATNEVRAKSKFWY+LRKLKKVKKSNGQ+LAINEIFEKNPT IKNYG Sbjct: 1 MGAFRFHQYQVVGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAINEIFEKNPTTIKNYG 78
BLAST of DN621411 vs. ExPASy Swiss-Prot
Match: RL18A_DROME (60S ribosomal protein L18a OS=Drosophila melanogaster GN=RpL18A PE=1 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 3.211e-43 Identity = 55/95 (57.89%), Postives = 64/95 (67.37%), Query Frame = -1 Query: 227 PNKDKELRIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPTRKL 511 P K K IWLRY SR+G HNMY+EYRD T+ GAV Q Y +M +RHR R+ IQIIK +IPA +R KQFH+SKIKFPLV R RKL Sbjct: 72 PVKIKNFGIWLRYDSRSGTHNMYREYRDLTVGGAVTQCYRDMGARHRARAHSIQIIKVDSIPAAKTRRVHVKQFHDSKIKFPLVQRVHHKGNRKL 166 HSP 2 Score: 85.8853 bits (211), Expect = 3.211e-43 Identity = 33/71 (46.48%), Postives = 57/71 (80.28%), Query Frame = -2 Query: 487 QYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYG 699 +Y+VVGR LP+E + +Y+M+++A + + AKS+FWY+LR+LKK KK+ G++++I +++E +P KIKN+G Sbjct: 9 EYEVVGRKLPSEKEPQTPLYKMRIFAPDNIVAKSRFWYFLRQLKKFKKTTGEIVSIKQVYETSPVKIKNFG 79
BLAST of DN621411 vs. ExPASy Swiss-Prot
Match: RL20_YEAST (60S ribosomal protein L20 OS=Saccharomyces cerevisiae GN=RPL20A PE=1 SV=2) HSP 1 Score: 99.7525 bits (247), Expect = 3.132e-40 Identity = 41/73 (56.16%), Postives = 64/73 (87.67%), Query Frame = -2 Query: 487 FHQYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYG 705 F +YQV+GR LPTE+ PK++RM+++A+NEV AKS++WY+L+KL KVKK++G++++IN+I E +PTK+KN+G Sbjct: 4 FKEYQVIGRRLPTESVPEPKLFRMRIFASNEVIAKSRYWYFLQKLHKVKKASGEIVSINQINEAHPTKVKNFG 76 HSP 2 Score: 85.1149 bits (209), Expect = 3.132e-40 Identity = 47/108 (43.52%), Postives = 60/108 (55.56%), Query Frame = -1 Query: 191 PNKDKELRIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIKTATIPAKL-CKRESTKQFHNSKIKFPLVFRKVRPPTRKLRTTYKASRPNLF 511 P K K +W+RY SR+G HNMYKE RD + AVE +Y +MA+RHR R I I+K A I KR+ KQF +KFPL R +K T+ RP+ F Sbjct: 69 PTKVKNFGVWVRYDSRSGTHNMYKEIRDVSRVAAVETLYQDMAARHRARFRSIHILKVAEIEKTADVKRQYVKQFLTKDLKFPLPHR-----VQKSTKTFSYKRPSTF 171
BLAST of DN621411 vs. ExPASy Swiss-Prot
Match: RL20_SCHPO (60S ribosomal protein L20 OS=Schizosaccharomyces pombe GN=rpl20a PE=1 SV=3) HSP 1 Score: 88.5817 bits (218), Expect = 2.333e-37 Identity = 48/109 (44.04%), Postives = 63/109 (57.80%), Query Frame = -1 Query: 191 EPNKDKELRIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIKTATIPAKL-CKRESTKQFHNSKIKFPLVFRKVRPPTRKLRTTYKASRPNLF 514 +P K K IW+RY SR+G HNMYKE+RDTT GAVE MY +MA+RHR R I+I+K + K +R KQ N +KFPL R+ + + RP+ F Sbjct: 67 KPLKAKVFGIWIRYDSRSGTHNMYKEFRDTTRVGAVEAMYADMAARHRARFRSIRILKVVEVEKKEDVRRNYVKQLLNPHLKFPLPHRRTGVVGLAGKKVFAPHRPSTF 175 HSP 2 Score: 86.6557 bits (213), Expect = 2.333e-37 Identity = 38/71 (53.52%), Postives = 55/71 (77.46%), Query Frame = -2 Query: 487 QYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYG 699 +YQVVGR +PTE + PK++RM+L+A NE AKS++WY+L+ + KVKK+ G+++AINEI E P K K +G Sbjct: 5 EYQVVGRKVPTEHEPVPKLFRMRLFAPNESVAKSRYWYFLKMINKVKKATGEIVAINEISEPKPLKAKVFG 75
BLAST of DN621411 vs. ExPASy Swiss-Prot
Match: RL18A_DANRE (60S ribosomal protein L18a OS=Danio rerio GN=rpl18a PE=2 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 3.052e-25 Identity = 58/111 (52.25%), Postives = 72/111 (64.86%), Query Frame = -1 Query: 191 F*KEPNKDKELRIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLRTTYKASRPNLF 523 F K P K K IWLRY SR+G HNMY+EYRD T +GAV Q Y +M +RHR R+ IQI+K I A C+R + KQFH+SKIKFPL R +R R+ + + RPN F Sbjct: 68 FEKSPLKVKNFGIWLRYDSRSGTHNMYREYRDLTTSGAVTQCYRDMGARHRARAHAIQIMKVQVIAANKCRRPAIKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175 HSP 2 Score: 82.4185 bits (202), Expect = 2.864e-15 Identity = 33/71 (46.48%), Postives = 56/71 (78.87%), Query Frame = -2 Query: 487 QYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYG 699 +Y+VVGR LP+ + P +YRM+++A N V AKS+FWY++ +L+K+KK++G+++ +FEK+P K+KN+G Sbjct: 9 EYKVVGRLLPSVKNPAPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKASGEIVYCGLVFEKSPLKVKNFG 79
BLAST of DN621411 vs. ExPASy Swiss-Prot
Match: RL18A_HUMAN (60S ribosomal protein L18a OS=Homo sapiens GN=RPL18A PE=1 SV=2) HSP 1 Score: 112.849 bits (281), Expect = 1.978e-24 Identity = 57/111 (51.35%), Postives = 71/111 (63.96%), Query Frame = -1 Query: 191 F*KEPNKDKELRIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLRTTYKASRPNLF 523 F K P + K IWLRY SR+G HNMY+EYRD T GAV Q Y +M +RHR R+ IQI+K I A C+R + KQFH+SKIKFPL R +R R+ + + RPN F Sbjct: 68 FEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175 HSP 2 Score: 86.6557 bits (213), Expect = 1.518e-16 Identity = 35/71 (49.30%), Postives = 56/71 (78.87%), Query Frame = -2 Query: 487 QYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYG 699 +Y+VVGR LPT P +YRM+++A N V AKS+FWY++ +LKK+KKS+G+++ ++FEK+P ++KN+G Sbjct: 9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFG 79
BLAST of DN621411 vs. ExPASy Swiss-Prot
Match: RL18A_BOVIN (60S ribosomal protein L18a OS=Bos taurus GN=RPL18A PE=2 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.978e-24 Identity = 57/111 (51.35%), Postives = 71/111 (63.96%), Query Frame = -1 Query: 191 F*KEPNKDKELRIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLRTTYKASRPNLF 523 F K P + K IWLRY SR+G HNMY+EYRD T GAV Q Y +M +RHR R+ IQI+K I A C+R + KQFH+SKIKFPL R +R R+ + + RPN F Sbjct: 68 FEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175 HSP 2 Score: 86.6557 bits (213), Expect = 1.518e-16 Identity = 35/71 (49.30%), Postives = 56/71 (78.87%), Query Frame = -2 Query: 487 QYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYG 699 +Y+VVGR LPT P +YRM+++A N V AKS+FWY++ +LKK+KKS+G+++ ++FEK+P ++KN+G Sbjct: 9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFG 79 The following BLAST results are available for this feature:
BLAST of DN621411 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 17
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Sequences
The
following sequences are available for this feature:
EST sequence >DN621411 ID=DN621411; Name=DN621411; organism=Citrus sinensis; type=EST; length=751bpback to top |