DN621410

Overview
NameDN621410
Unique NameDN621410
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length583
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621410 vs. ExPASy Swiss-Prot
Match: GRPE1_PONAB (GrpE protein homolog 1, mitochondrial OS=Pongo abelii GN=GRPEL1 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 5.422e-25
Identity = 53/76 (69.74%), Postives = 61/76 (80.26%), Query Frame = 3
Query:  348 ELNDKYKRALAENENIRNRLNKQIQETKLFAIQGFCKDLLEVADVLNKATECVPKTEVTDKNPHLKNLYEGLTMTE 575
            E  +KYKRALA+ EN+R R  K ++E KL+ IQ FCKDLLEVADVL KAT+CVPK E+ D NPHLKNLYEGL MTE
Sbjct:   73 ETVEKYKRALADTENLRQRSQKLVEEAKLYGIQAFCKDLLEVADVLEKATQCVPKEEIKDDNPHLKNLYEGLVMTE 148          
BLAST of DN621410 vs. ExPASy Swiss-Prot
Match: GRPE1_HUMAN (GrpE protein homolog 1, mitochondrial OS=Homo sapiens GN=GRPEL1 PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 5.422e-25
Identity = 53/76 (69.74%), Postives = 61/76 (80.26%), Query Frame = 3
Query:  348 ELNDKYKRALAENENIRNRLNKQIQETKLFAIQGFCKDLLEVADVLNKATECVPKTEVTDKNPHLKNLYEGLTMTE 575
            E  +KYKRALA+ EN+R R  K ++E KL+ IQ FCKDLLEVADVL KAT+CVPK E+ D NPHLKNLYEGL MTE
Sbjct:   73 ETVEKYKRALADTENLRQRSQKLVEEAKLYGIQAFCKDLLEVADVLEKATQCVPKEEIKDDNPHLKNLYEGLVMTE 148          
BLAST of DN621410 vs. ExPASy Swiss-Prot
Match: GRPE1_BOVIN (GrpE protein homolog 1, mitochondrial OS=Bos taurus GN=GRPEL1 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.208e-24
Identity = 51/76 (67.11%), Postives = 62/76 (81.58%), Query Frame = 3
Query:  348 ELNDKYKRALAENENIRNRLNKQIQETKLFAIQGFCKDLLEVADVLNKATECVPKTEVTDKNPHLKNLYEGLTMTE 575
            E  +KYKRALA+ EN+R R  K ++E KL+ IQGFCKDLLEVAD+L KAT+CVP+ E+ D NPHLK+LYEGL MTE
Sbjct:   73 ETMEKYKRALADTENLRQRSQKLVEEAKLYGIQGFCKDLLEVADILEKATQCVPQEEIRDDNPHLKSLYEGLVMTE 148          
BLAST of DN621410 vs. ExPASy Swiss-Prot
Match: GRPE1_RAT (GrpE protein homolog 1, mitochondrial OS=Rattus norvegicus GN=Grpel1 PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 7.830e-24
Identity = 51/76 (67.11%), Postives = 62/76 (81.58%), Query Frame = 3
Query:  348 ELNDKYKRALAENENIRNRLNKQIQETKLFAIQGFCKDLLEVADVLNKATECVPKTEVTDKNPHLKNLYEGLTMTE 575
            E  +KYKRALA+ EN+R R  K ++E KL+ IQGFCKDLLEVAD+L KAT+ VPK EV++ NPHLK+LYEGL MTE
Sbjct:   73 ETMEKYKRALADTENLRQRSQKLVEEAKLYGIQGFCKDLLEVADILEKATQSVPKEEVSNNNPHLKSLYEGLVMTE 148          
BLAST of DN621410 vs. ExPASy Swiss-Prot
Match: GRPE1_MOUSE (GrpE protein homolog 1, mitochondrial OS=Mus musculus GN=Grpel1 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.023e-23
Identity = 50/76 (65.79%), Postives = 62/76 (81.58%), Query Frame = 3
Query:  348 ELNDKYKRALAENENIRNRLNKQIQETKLFAIQGFCKDLLEVADVLNKATECVPKTEVTDKNPHLKNLYEGLTMTE 575
            E  +KYKRALA+ EN+R R  K ++E KL+ IQGFCKDLLEVAD+L KAT+ VPK E+++ NPHLK+LYEGL MTE
Sbjct:   73 ETMEKYKRALADTENLRQRSQKLVEEAKLYGIQGFCKDLLEVADILEKATQSVPKEEISNNNPHLKSLYEGLVMTE 148          
BLAST of DN621410 vs. ExPASy Swiss-Prot
Match: GRPE_DROME (GrpE protein homolog, mitochondrial OS=Drosophila melanogaster GN=Roe1 PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 5.075e-23
Identity = 57/109 (52.29%), Postives = 73/109 (66.97%), Query Frame = 3
Query:  252 PAQKVEKESAEGSDPQVXXXXXXXXXXXXNRDELNDKYKRALAENENIRNRLNKQIQETKLFAIQGFCKDLLEVADVLNKATECVPKTEVTDKNPHLKNLYEGLTMTES 578
            P +  E+++ E S P+V               EL DKYKR+LA++EN+RNRLNKQI + K+F IQ FCKDLLEVAD L  AT+ VPK +++  N  LKNLYEGLTMT +
Sbjct:   40 PEEATEQKATESS-PEVEKLTKELAAAKEQNAELMDKYKRSLADSENMRNRLNKQISDAKIFGIQSFCKDLLEVADTLGHATQAVPKDKLSG-NADLKNLYEGLTMTRA 146          
BLAST of DN621410 vs. ExPASy Swiss-Prot
Match: GRPE_CAEEL (GrpE protein homolog, mitochondrial OS=Caenorhabditis elegans GN=C34C12.8 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.480e-14
Identity = 37/78 (47.44%), Postives = 55/78 (70.51%), Query Frame = 3
Query:  348 ELNDKYKRALAENENIRNRLNKQIQETKLFAIQGFCKDLLEVADVLNKATECVPKTEVTDKNPHLKNLYEGLTMTESI 581
            +  DKY+R+LAE EN+R R  KQ  + K+FAIQ FCKDLLEV+D+L+ A + V   ++      LK+L+EG++MT ++
Sbjct:   92 DFKDKYQRSLAETENVRRRGIKQTDDAKVFAIQSFCKDLLEVSDILDIAVKSVKPEDLESGGKALKDLFEGVSMTRTV 169          
BLAST of DN621410 vs. ExPASy Swiss-Prot
Match: GRPE2_BOVIN (GrpE protein homolog 2, mitochondrial OS=Bos taurus GN=GRPEL2 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.525e-14
Identity = 35/78 (44.87%), Postives = 57/78 (73.08%), Query Frame = 3
Query:  348 ELNDKYKRALAENENIRNRLNKQIQETKLFAIQGFCKDLLEVADVLNKATECV-PKTEVTDKNPHLKNLYEGLTMTES 578
            +L  +Y+RA+A++ENIR R  + +++ K+F IQ FCKDL+EVAD+L K TEC+  +TE  D+   L+ ++ GL++ E+
Sbjct:   74 DLTVRYQRAVADSENIRRRTQRCVEDAKIFGIQSFCKDLVEVADILEKTTECISEETEPADQKLTLEKIFRGLSLLEA 151          
BLAST of DN621410 vs. ExPASy Swiss-Prot
Match: GRPE2_HUMAN (GrpE protein homolog 2, mitochondrial OS=Homo sapiens GN=GRPEL2 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.761e-13
Identity = 34/78 (43.59%), Postives = 55/78 (70.51%), Query Frame = 3
Query:  348 ELNDKYKRALAENENIRNRLNKQIQETKLFAIQGFCKDLLEVADVLNKATECV-PKTEVTDKNPHLKNLYEGLTMTES 578
            +L  +Y+RA+A+ ENIR R  + +++ K+F IQ FCKDL+EVAD+L K TEC+  ++E  D+   L+ ++ GL + E+
Sbjct:   75 DLTVRYQRAIADCENIRRRTQRCVEDAKIFGIQSFCKDLVEVADILEKTTECISEESEPEDQKLTLEKVFRGLLLLEA 152          
BLAST of DN621410 vs. ExPASy Swiss-Prot
Match: GRPE2_PONAB (GrpE protein homolog 2, mitochondrial OS=Pongo abelii GN=GRPEL2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.218e-13
Identity = 34/78 (43.59%), Postives = 55/78 (70.51%), Query Frame = 3
Query:  348 ELNDKYKRALAENENIRNRLNKQIQETKLFAIQGFCKDLLEVADVLNKATECV-PKTEVTDKNPHLKNLYEGLTMTES 578
            +L  +Y+RA+A+ ENIR R  + +++ K+F IQ FCKDL+EVAD+L K TEC+  ++E  D+   L+ ++ GL + E+
Sbjct:   75 DLTVRYQRAVADCENIRRRTQRCVEDAKIFGIQSFCKDLVEVADILEKTTECISEESEPEDQKLTLEKVFRGLLLLEA 152          
The following BLAST results are available for this feature:
BLAST of DN621410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
GRPE1_PONAB5.422e-2569.74GrpE protein homolog 1, mitochondrial OS=Pongo abe... [more]
GRPE1_HUMAN5.422e-2569.74GrpE protein homolog 1, mitochondrial OS=Homo sapi... [more]
GRPE1_BOVIN1.208e-2467.11GrpE protein homolog 1, mitochondrial OS=Bos tauru... [more]
GRPE1_RAT7.830e-2467.11GrpE protein homolog 1, mitochondrial OS=Rattus no... [more]
GRPE1_MOUSE1.023e-2365.79GrpE protein homolog 1, mitochondrial OS=Mus muscu... [more]
GRPE_DROME5.075e-2352.29GrpE protein homolog, mitochondrial OS=Drosophila ... [more]
GRPE_CAEEL1.480e-1447.44GrpE protein homolog, mitochondrial OS=Caenorhabdi... [more]
GRPE2_BOVIN2.525e-1444.87GrpE protein homolog 2, mitochondrial OS=Bos tauru... [more]
GRPE2_HUMAN4.761e-1343.59GrpE protein homolog 2, mitochondrial OS=Homo sapi... [more]
GRPE2_PONAB6.218e-1343.59GrpE protein homolog 2, mitochondrial OS=Pongo abe... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06K19_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006K19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621410 ID=DN621410; Name=DN621410; organism=Citrus sinensis; type=EST; length=583bp
TTTTTTTTTTTTTTTTTACAAACTTCTCGAAAAATCAGCGAAGTAAAAGA
ATGATGCAACTGAAAGCTTGATTAGTAGTTTGGTTTTTTGTCAAAAAAAT
GTCTACCATTCATAAGTTATGGACTTGTGGACGTGTTGCAACGAACACGG
CCTCATTAAATTTAAAAAATTCTCCAGCAATCAAATATCCGACATATTCC
AGTTACCGAGGTATTTGGAGTTCCTTTCTGAAACGAAAAGAAGCTTCGGA
TCCTGCACAAAAGGTCGAAAAAGAGAGTGCTGAAGGCTCGGACCCACAAG
TTGAGGAACTGCTAAAAGCGCTCGAAGAAATGAAAGAGAATCGCGACGAA
TTAAATGATAAGTATAAACGAGCTCTAGCTGAAAATGAAAACATACGTAA
TCGGTTAAATAAACAGATTCAAGAAACTAAATTATTCGCCATTCAAGGAT
TTTGTAAAGATTTACTCGAGGTAGCGGATGTGCTGAACAAAGCTACCGAG
TGTGTTCCAAAAACTGAGGTTACGGATAAGAATCCACATCTTAAAAATCT
GTACGAAGGCTTGACGATGACCGAAAGTATTTT
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