DN621409

Overview
NameDN621409
Unique NameDN621409
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length734
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621409 vs. ExPASy Swiss-Prot
Match: GRPE1_PONAB (GrpE protein homolog 1, mitochondrial OS=Pongo abelii GN=GRPEL1 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.003e-25
Identity = 58/94 (61.70%), Postives = 66/94 (70.21%), Query Frame = -1
Query:  453 TECVSKTEVTDKNPHLKNLYEGLTMTESILKSVFQKHGLEQMNPVDEKFNPNLHEALFEQAVEGKPAGXXXXVSKTGYKLHDRVIRPPLVGVSK 734
            T+CV K E+ D NPHLKNLYEGL MTE  ++ VF KHGL ++NPV  KF+P  HEALF   VEGK  G    VSK GYKLH R +RP LVGV K
Sbjct:  122 TQCVPKEEIKDDNPHLKNLYEGLVMTEVQIQKVFTKHGLLKLNPVGAKFDPYEHEALFHTPVEGKEPGTVALVSKVGYKLHGRTLRPALVGVVK 215          
BLAST of DN621409 vs. ExPASy Swiss-Prot
Match: GRPE1_HUMAN (GrpE protein homolog 1, mitochondrial OS=Homo sapiens GN=GRPEL1 PE=1 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 1.003e-25
Identity = 58/94 (61.70%), Postives = 66/94 (70.21%), Query Frame = -1
Query:  453 TECVSKTEVTDKNPHLKNLYEGLTMTESILKSVFQKHGLEQMNPVDEKFNPNLHEALFEQAVEGKPAGXXXXVSKTGYKLHDRVIRPPLVGVSK 734
            T+CV K E+ D NPHLKNLYEGL MTE  ++ VF KHGL ++NPV  KF+P  HEALF   VEGK  G    VSK GYKLH R +RP LVGV K
Sbjct:  122 TQCVPKEEIKDDNPHLKNLYEGLVMTEVQIQKVFTKHGLLKLNPVGAKFDPYEHEALFHTPVEGKEPGTVALVSKVGYKLHGRTLRPALVGVVK 215          
BLAST of DN621409 vs. ExPASy Swiss-Prot
Match: GRPE1_BOVIN (GrpE protein homolog 1, mitochondrial OS=Bos taurus GN=GRPEL1 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.502e-24
Identity = 54/94 (57.45%), Postives = 66/94 (70.21%), Query Frame = -1
Query:  453 TECVSKTEVTDKNPHLKNLYEGLTMTESILKSVFQKHGLEQMNPVDEKFNPNLHEALFEQAVEGKPAGXXXXVSKTGYKLHDRVIRPPLVGVSK 734
            T+CV + E+ D NPHLK+LYEGL MTE  ++ VF KHGL ++NP+  KF+P  HEALF   VEGK  G    V+K GYKLH R +RP LVGV K
Sbjct:  122 TQCVPQEEIRDDNPHLKSLYEGLVMTEVQIQKVFTKHGLLRLNPLGAKFDPYEHEALFHTPVEGKEPGTVALVNKVGYKLHGRTLRPALVGVVK 215          
BLAST of DN621409 vs. ExPASy Swiss-Prot
Match: GRPE1_RAT (GrpE protein homolog 1, mitochondrial OS=Rattus norvegicus GN=Grpel1 PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 3.567e-23
Identity = 54/94 (57.45%), Postives = 66/94 (70.21%), Query Frame = -1
Query:  453 TECVSKTEVTDKNPHLKNLYEGLTMTESILKSVFQKHGLEQMNPVDEKFNPNLHEALFEQAVEGKPAGXXXXVSKTGYKLHDRVIRPPLVGVSK 734
            T+ V K EV++ NPHLK+LYEGL MTE  ++ VF KHGL +++P+  KF+P  HEALF   VEGK  G    VSK GYKLH R +RP LVGV K
Sbjct:  122 TQSVPKEEVSNNNPHLKSLYEGLVMTEVQIQKVFTKHGLLRLDPIGAKFDPYEHEALFHTPVEGKEPGTVALVSKVGYKLHGRTLRPALVGVVK 215          
BLAST of DN621409 vs. ExPASy Swiss-Prot
Match: GRPE1_MOUSE (GrpE protein homolog 1, mitochondrial OS=Mus musculus GN=Grpel1 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.658e-23
Identity = 53/94 (56.38%), Postives = 66/94 (70.21%), Query Frame = -1
Query:  453 TECVSKTEVTDKNPHLKNLYEGLTMTESILKSVFQKHGLEQMNPVDEKFNPNLHEALFEQAVEGKPAGXXXXVSKTGYKLHDRVIRPPLVGVSK 734
            T+ V K E+++ NPHLK+LYEGL MTE  ++ VF KHGL +++P+  KF+P  HEALF   VEGK  G    VSK GYKLH R +RP LVGV K
Sbjct:  122 TQSVPKEEISNNNPHLKSLYEGLVMTEVQIQKVFTKHGLLRLDPIGAKFDPYEHEALFHTPVEGKEPGTVALVSKVGYKLHGRTLRPALVGVVK 215          
BLAST of DN621409 vs. ExPASy Swiss-Prot
Match: GRPE_DROME (GrpE protein homolog, mitochondrial OS=Drosophila melanogaster GN=Roe1 PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.832e-19
Identity = 49/94 (52.13%), Postives = 67/94 (71.28%), Query Frame = -1
Query:  453 TECVSKTEVTDKNPHLKNLYEGLTMTESILKSVFQKHGLEQMNPVDEKFNPNLHEALFEQAVEGKPAGXXXXVSKTGYKLHDRVIRPPLVGVSK 734
            T+ V K +++  N  LKNLYEGLTMT + L  VF++HGLE ++P+++KF+PN HEALF++  +         V+K GYKLH+R IRP LVGVSK
Sbjct:  120 TQAVPKDKLSG-NADLKNLYEGLTMTRASLLQVFKRHGLEPLDPINQKFDPNQHEALFQKEDKTVEPNTVVEVTKLGYKLHERCIRPALVGVSK 212          
BLAST of DN621409 vs. ExPASy Swiss-Prot
Match: GRPE_KLULA (GrpE protein homolog, mitochondrial OS=Kluyveromyces lactis GN=mge1 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.096e-15
Identity = 39/89 (43.82%), Postives = 54/89 (60.67%), Query Frame = -1
Query:  453 KTEVTDKNPHLKNLYEGLTMTESILKSVFQKHGLEQMNPVDEKFNPNLHEALFEQAVEGKPAGXXXXVSKTGYKLHDRVIRPPLVGVSK 719
            K E  +++  L +LY G+ MT  + +   +KHG+EQ+NP+ E F+PN HEA FE     K  G    V + GY L+DRVIRP  VG+ K
Sbjct:  151 KPETLEQSQELSDLYTGVKMTRDVFEKTLKKHGIEQLNPIGESFDPNKHEATFELPQPDKEPGTVFHVQQIGYTLNDRVIRPAKVGIVK 239          
BLAST of DN621409 vs. ExPASy Swiss-Prot
Match: GRPE_NEUCR (GrpE protein homolog, mitochondrial OS=Neurospora crassa GN=mge-1 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.040e-14
Identity = 45/92 (48.91%), Postives = 57/92 (61.96%), Query Frame = -1
Query:  453 KTEVTDKNPHLK---NLYEGLTMTESILKSVFQKHGLEQMNPVDEKFNPNLHEALFEQAVEGKPAGXXXXVSKTGYKLHDRVIRPPLVGVSK 719
            K +  +++ HLK   NLYEGL MTESIL S  +KHGLE++ P  E FNPN HEA F   +  K       V + G+KL+ RV+RP  VGV K
Sbjct:  145 KLKSEEQSEHLKDLVNLYEGLKMTESILLSTLKKHGLERIEPEGEVFNPNEHEATFMAPMPDKEHNVVFHVQQKGFKLNGRVLRPAQVGVVK 236          
BLAST of DN621409 vs. ExPASy Swiss-Prot
Match: GRPE_DEBHA (GrpE protein homolog, mitochondrial OS=Debaryomyces hansenii GN=mge1 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.358e-14
Identity = 37/89 (41.57%), Postives = 55/89 (61.80%), Query Frame = -1
Query:  453 KTEVTDKNPHLKNLYEGLTMTESILKSVFQKHGLEQMNPVDEKFNPNLHEALFEQAVEGKPAGXXXXVSKTGYKLHDRVIRPPLVGVSK 719
            K +    N  +KNLY+G+ MT ++ +    +HG+E+++P+ E+F+PN HEA FE A   K  G    V + GY L+ RV+RP  VGV K
Sbjct:  151 KEDTLKNNSEVKNLYDGVDMTRNVFEKTLARHGIEKVDPIGEQFDPNQHEATFEIAQPDKEPGTVFHVQQNGYTLNSRVLRPAKVGVVK 239          
BLAST of DN621409 vs. ExPASy Swiss-Prot
Match: GRPE_DICDI (GrpE protein homolog, mitochondrial OS=Dictyostelium discoideum GN=grpE PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.026e-14
Identity = 39/87 (44.83%), Postives = 54/87 (62.07%), Query Frame = -1
Query:  453 EVTDKNPHLKNLYEGLTMTESILKSVFQKHGLEQMNPVDEKFNPNLHEALFEQAVEGKPAGXXXXVSKTGYKLHDRVIRPPLVGVSK 713
            E  D+N  LK+L+EG+ MTE +   +    GL++ NP+ EKF+ N H A+FE     K       V K GYKLHDR++RP +VGV+K
Sbjct:  123 EKLDENKELKDLHEGVKMTEQLFLKIMGNQGLQRFNPIGEKFDFNNHHAIFELNDPTKENNTVGHVVKQGYKLHDRLVRPAMVGVNK 209          
The following BLAST results are available for this feature:
BLAST of DN621409 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
GRPE1_PONAB1.003e-2561.70GrpE protein homolog 1, mitochondrial OS=Pongo abe... [more]
GRPE1_HUMAN1.003e-2561.70GrpE protein homolog 1, mitochondrial OS=Homo sapi... [more]
GRPE1_BOVIN5.502e-2457.45GrpE protein homolog 1, mitochondrial OS=Bos tauru... [more]
GRPE1_RAT3.567e-2357.45GrpE protein homolog 1, mitochondrial OS=Rattus no... [more]
GRPE1_MOUSE4.658e-2356.38GrpE protein homolog 1, mitochondrial OS=Mus muscu... [more]
GRPE_DROME1.832e-1952.13GrpE protein homolog, mitochondrial OS=Drosophila ... [more]
GRPE_KLULA2.096e-1543.82GrpE protein homolog, mitochondrial OS=Kluyveromyc... [more]
GRPE_NEUCR1.040e-1448.91GrpE protein homolog, mitochondrial OS=Neurospora ... [more]
GRPE_DEBHA1.358e-1441.57GrpE protein homolog, mitochondrial OS=Debaryomyce... [more]
GRPE_DICDI3.026e-1444.83GrpE protein homolog, mitochondrial OS=Dictyosteli... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06K19_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006K19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621409 ID=DN621409; Name=DN621409; organism=Citrus sinensis; type=EST; length=734bp
TTTTTTTTTTTTTTTCTATTGTATGGCGATAACTCTTTAATACGTGATTT
TGCCTGTATGACAAATTCGAAATTGATAGTCAGTTTAGTTCTGTACAGAA
GTTTTCTAACATGAGATGAACAGATGATAAACAGAAGATTCGTAGATATA
ACAACATGAACATTATGAGAAGTTTGATAATCATAGAAATATTCAACATT
ATTATTTATAGGTTTGATCATCATAGAAGTACGAGAATCATTTCTGCATT
CCAACACAATTAATCATGTATCAAAAGAATACTCCGTTGGAAGAGCGTTC
CTTCTCAAGAATTCATCTAGGAAATTCCGGAATGCATTACTACCATTAAC
AACTGTACAACTTAACTACTCAACTTCACCGGCTTATAAATTTCGGAATT
ATTGGTAGTTTTAACGTTGGCATGGACGATGGTGAATTACTAGGTGTTCT
CATTTGGAAACACCAACCAGTGGGGGTCGTATAACTCGGTCGTGTAATTT
GTATCCTGTTTTAGAGACAACGACGACAACACCAGCAGGTTTGCCTTCCA
CCGCTTGTTCAAATAGAGCTTCGTGAAGGTTTGGATTGAATTTCTCATCA
ACCGGATTCATCTGTTCTAAACCGTGTTTCTGGAATACACTTTTCAAAAT
ACTTTCGGTCATCGTCAAGCCTTCGTACAGATTTTTAAGATGTGGATTCT
TATCCGTAACCTCAGTTTTTGAAACACACTCGGT
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