DN621406 | Citrus Genome Database

Overview


Name	DN621406
Unique Name	DN621406
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	793

Libraries


Library Name	Type
Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig6352	contig	Csv1_Contig6352:1114..1906.	BLAST: Citrus Unigene V1 Contigs to TAIR9

Homology

[Close]

BLAST of DN621406 vs. ExPASy Swiss-Prot
Match: YCF3_VITVI (Photosystem I assembly protein ycf3 OS=Vitis vinifera GN=ycf3 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.292e-39
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = -2

Query:   16 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 243
            MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY
Sbjct:   43 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 118

[Close]

BLAST of DN621406 vs. ExPASy Swiss-Prot
Match: YCF3_TOBAC (Photosystem I assembly protein ycf3 OS=Nicotiana tabacum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.292e-39
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = -2

Query:   16 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 243
            MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY
Sbjct:   43 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 118

[Close]

BLAST of DN621406 vs. ExPASy Swiss-Prot
Match: YCF3_SPIOL (Photosystem I assembly protein ycf3 OS=Spinacia oleracea GN=ycf3 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.292e-39
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = -2

Query:   16 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 243
            MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY
Sbjct:   40 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 115

[Close]

BLAST of DN621406 vs. ExPASy Swiss-Prot
Match: YCF3_SOYBN (Photosystem I assembly protein ycf3 OS=Glycine max GN=ycf3 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.292e-39
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = -2

Query:   16 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 243
            MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY
Sbjct:   43 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 118

[Close]

BLAST of DN621406 vs. ExPASy Swiss-Prot
Match: YCF3_SOLTU (Photosystem I assembly protein ycf3 OS=Solanum tuberosum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.292e-39
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = -2

Query:   16 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 243
            MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY
Sbjct:   43 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 118

[Close]

BLAST of DN621406 vs. ExPASy Swiss-Prot
Match: YCF3_SOLLC (Photosystem I assembly protein ycf3 OS=Solanum lycopersicum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.292e-39
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = -2

Query:   16 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 243
            MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY
Sbjct:   43 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 118

[Close]

BLAST of DN621406 vs. ExPASy Swiss-Prot
Match: YCF3_SOLBU (Photosystem I assembly protein ycf3 OS=Solanum bulbocastanum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.292e-39
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = -2

Query:   16 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 243
            MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY
Sbjct:   43 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 118

[Close]

BLAST of DN621406 vs. ExPASy Swiss-Prot
Match: YCF3_SINAL (Photosystem I assembly protein ycf3 OS=Sinapis alba GN=ycf3 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.292e-39
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = -2

Query:   16 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 243
            MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY
Sbjct:   43 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 118

[Close]

BLAST of DN621406 vs. ExPASy Swiss-Prot
Match: YCF3_POPTR (Photosystem I assembly protein ycf3 OS=Populus trichocarpa GN=ycf3 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.292e-39
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = -2

Query:   16 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 243
            MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY
Sbjct:   43 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 118

[Close]

BLAST of DN621406 vs. ExPASy Swiss-Prot
Match: YCF3_POPAL (Photosystem I assembly protein ycf3 OS=Populus alba GN=ycf3 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.292e-39
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = -2

Query:   16 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 243
            MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY
Sbjct:   43 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 118

The following BLAST results are available for this feature:

BLAST of DN621406 vs. ExPASy Swiss-Prot

BLAST of DN621406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136


Match Name	E-value	Identity	Description
YCF3_VITVI	5.292e-39	100.00	Photosystem I assembly protein ycf3 OS=Vitis vinif...	[more]
YCF3_TOBAC	5.292e-39	100.00	Photosystem I assembly protein ycf3 OS=Nicotiana t...	[more]
YCF3_SPIOL	5.292e-39	100.00	Photosystem I assembly protein ycf3 OS=Spinacia ol...	[more]
YCF3_SOYBN	5.292e-39	100.00	Photosystem I assembly protein ycf3 OS=Glycine max...	[more]
YCF3_SOLTU	5.292e-39	100.00	Photosystem I assembly protein ycf3 OS=Solanum tub...	[more]
YCF3_SOLLC	5.292e-39	100.00	Photosystem I assembly protein ycf3 OS=Solanum lyc...	[more]
YCF3_SOLBU	5.292e-39	100.00	Photosystem I assembly protein ycf3 OS=Solanum bul...	[more]
YCF3_SINAL	5.292e-39	100.00	Photosystem I assembly protein ycf3 OS=Sinapis alb...	[more]
YCF3_POPTR	5.292e-39	100.00	Photosystem I assembly protein ycf3 OS=Populus tri...	[more]
YCF3_POPAL	5.292e-39	100.00	Photosystem I assembly protein ycf3 OS=Populus alb...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS11_06K17_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006K17, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DN621406 ID=DN621406; Name=DN621406; organism=Citrus sinensis; type=EST; length=793bp
TAGAGATAGTCGCACGTAATGACAGATCACAGCCATATTATTAAAAGCTT
GTGGTAAGAACGGATTTCGTTCTAGTGCCCGAAAATAATATTCTAAAGCT
TTTGTATGTTCTCCGTTACTTGTGTGGATAAGGCCTATGTTATAGAGTAT
ATAGCTTCGATCGTAAGGATCAATTTCTAGTCGCATAGCTTCATAATAAT
TCTGTAAAGCTTCCGCATAATTGCCTTCAGATTGAGCTGACATCCGTTAC
GGTCGTCATTCGATTCAAAGAATTCTCCGTTTCAAAACCGTACATGAGAT
GAAAATCTCATACGGCTCCTCCTTTATGTGCATTATGAGAATAATCCATG
AAATCAAAAAAGATTGAAATATTCTCATTATGAACTAAGTGGGGCTAATG
TTTTTACAAGAAATCTCTAGCCAACCTTCCTGCAAAAGCTTTTTTCTTAA
TATCACGCGTGTTGGTACTAGATAAAACCGGAAACTCCAACAATTTCTTT
GTTCTCAACGCCCCTTAATTTACAGGAATTAATCACTTCAACAGTCTTCG
ATGGTTATACGGGTATCCACAGTACGAACGAGATGGATGTTTGTTATCCC
AACCATTCTTCTTAGTCCCGATCCCGCTAAGGAAAGGGGGCAGTTTATAA
CAGAGTTTTCGTGTTGCTGATTCCTAGACGTAGCGCCTCTTCCCCTATGC
CGCCTATTGGTACTGGTGTAGTAAGGTTGACTTGCAATACAGAACCCATA
GGTGTAACCTTTCGCTCAATACTAGAATCGACAATTGAAGCAT