DN621404

Overview
NameDN621404
Unique NameDN621404
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length779
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1086 contig Csv1_Contig1086:374..1152. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN621404 vs. ExPASy Swiss-Prot
Match: ATHB6_ARATH (Homeobox-leucine zipper protein ATHB-6 OS=Arabidopsis thaliana GN=ATHB-6 PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.214e-48
Identity = 109/162 (67.28%), Postives = 125/162 (77.16%), Query Frame = 3
Query:  309 MKRSLCSSDDSLGALMSICP--ATDEQSPRNNQVYSREFQTMXXXXXXXXXXXXXXX-HV--SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLNYDSLSHDNEALL*EIRELKSKLN 779
            MKR   SS DS+G L+S+CP  +TDEQSPR  +   REFQ+M                HV  SEKKRRLS++QVKALEKNFE+ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLE+DYGVLK  YD+L+ N+DSL  DNE+LL EI +LK+KLN
Sbjct:    2 MKR--LSSSDSVGGLISLCPTTSTDEQSPR--RYGGREFQSMLEGYEEEEEAIVEERGHVGLSEKKRRLSINQVKALEKNFELENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLEKDYGVLKTQYDSLRHNFDSLRRDNESLLQEISKLKTKLN 159          
BLAST of DN621404 vs. ExPASy Swiss-Prot
Match: ATB16_ARATH (Homeobox-leucine zipper protein ATHB-16 OS=Arabidopsis thaliana GN=ATHB-16 PE=2 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 3.423e-43
Identity = 99/163 (60.74%), Postives = 116/163 (71.17%), Query Frame = 3
Query:  309 MKRSLCSSDDSLGALMSICPATDEQSPRNNQVYSREFQTMXXXXXXXXXXXXXXXH------VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLNYDSLSHDNEALL*EIRELKSKLN 779
            MKR   SS DS+  L+S   +TDEQSPR    Y   +Q+M                      +SEKKRRL VDQVKALEKNFE+ENKLEPERK KLAQELGLQPRQVAVWFQNRRARWKTKQLE+DYGVLK  YD+L+ N+DSL  DN++LL EI ++K+K+N
Sbjct:    1 MKR--LSSSDSMCGLIST--STDEQSPRG---YGSNYQSMLEGYDEDATLIEEYSGNHHHMGLSEKKRRLKVDQVKALEKNFELENKLEPERKTKLAQELGLQPRQVAVWFQNRRARWKTKQLEKDYGVLKGQYDSLRHNFDSLRRDNDSLLQEISKIKAKVN 156          
BLAST of DN621404 vs. ExPASy Swiss-Prot
Match: ATHB5_ARATH (Homeobox-leucine zipper protein ATHB-5 OS=Arabidopsis thaliana GN=ATHB-5 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 7.625e-43
Identity = 100/169 (59.17%), Postives = 115/169 (68.05%), Query Frame = 3
Query:  309 MKRSLCSSDDSLGALMSICPATDEQ-SPRNNQV---------YSREFQTMXXXXXXXXXXXXXXXH--VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLNYDSLSHDNEALL*EIRELKSKLN 779
            MKRS  SSD   G L      TD+Q SPR             YS+ F  +                   +EKKRRL V+QVKALEKNFE++NKLEPERKVKLAQELGLQPRQVA+WFQNRRARWKTKQLERDYGVLK+N+DALK N DSL  DN++LL +I+ELK+KLN
Sbjct:    1 MKRSRGSSDSLSGFLPIRHSTTDKQISPRPTTTGFLYSGAGDYSQMFDALEDDGSLEDLGGVGHASSTAAEKKRRLGVEQVKALEKNFEIDNKLEPERKVKLAQELGLQPRQVAIWFQNRRARWKTKQLERDYGVLKSNFDALKRNRDSLQRDNDSLLGQIKELKAKLN 169          
BLAST of DN621404 vs. ExPASy Swiss-Prot
Match: HOX4_ORYSJ (Homeobox-leucine zipper protein HOX4 OS=Oryza sativa subsp. japonica GN=HOX4 PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.066e-36
Identity = 73/98 (74.49%), Postives = 90/98 (91.84%), Query Frame = 3
Query:  483 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLNYDSLSHDNEALL*EIRELKSKL 776
            EKKRRLSV+QV+ALE++FEVENKLEPERK +LA++LGLQPRQVAVWFQNRRARWKTKQLERDY  L+ +YD+L+L++D+L  D +ALL EI+ELK+KL
Sbjct:   50 EKKRRLSVEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRHSYDSLRLDHDALRRDKDALLAEIKELKAKL 147          
BLAST of DN621404 vs. ExPASy Swiss-Prot
Match: HOX4_ORYSI (Homeobox-leucine zipper protein HOX4 OS=Oryza sativa subsp. indica GN=HOX4 PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.066e-36
Identity = 73/98 (74.49%), Postives = 90/98 (91.84%), Query Frame = 3
Query:  483 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLNYDSLSHDNEALL*EIRELKSKL 776
            EKKRRLSV+QV+ALE++FEVENKLEPERK +LA++LGLQPRQVAVWFQNRRARWKTKQLERDY  L+ +YD+L+L++D+L  D +ALL EI+ELK+KL
Sbjct:   50 EKKRRLSVEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRHSYDSLRLDHDALRRDKDALLAEIKELKAKL 147          
BLAST of DN621404 vs. ExPASy Swiss-Prot
Match: HOX20_ORYSJ (Homeobox-leucine zipper protein HOX20 OS=Oryza sativa subsp. japonica GN=HOX20 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.292e-36
Identity = 72/98 (73.47%), Postives = 87/98 (88.78%), Query Frame = 3
Query:  483 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLNYDSLSHDNEALL*EIRELKSKL 776
            EKKRRLSV+QV+ALE++FE ENKLEPERK +LA++LGLQPRQVAVWFQNRRARWKTKQLERDY  L+ +YDAL+ ++D+L  D +ALL EI+ELK KL
Sbjct:   42 EKKRRLSVEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRQSYDALRADHDALRRDKDALLAEIKELKGKL 139          
BLAST of DN621404 vs. ExPASy Swiss-Prot
Match: HOX20_ORYSI (Homeobox-leucine zipper protein HOX20 OS=Oryza sativa subsp. indica GN=HOX20 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.292e-36
Identity = 72/98 (73.47%), Postives = 87/98 (88.78%), Query Frame = 3
Query:  483 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLNYDSLSHDNEALL*EIRELKSKL 776
            EKKRRLSV+QV+ALE++FE ENKLEPERK +LA++LGLQPRQVAVWFQNRRARWKTKQLERDY  L+ +YDAL+ ++D+L  D +ALL EI+ELK KL
Sbjct:   42 EKKRRLSVEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRQSYDALRADHDALRRDKDALLAEIKELKGKL 139          
BLAST of DN621404 vs. ExPASy Swiss-Prot
Match: HAT5_ARATH (Homeobox-leucine zipper protein HAT5 OS=Arabidopsis thaliana GN=HAT5 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.718e-32
Identity = 68/98 (69.39%), Postives = 79/98 (80.61%), Query Frame = 3
Query:  483 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLNYDSLSHDNEALL*EIRELKSKL 776
            EKKRRL+ +QV  LEK+FE ENKLEPERK +LA++LGLQPRQVAVWFQNRRARWKTKQLERDY +LK+ YD L  NYDS+  DN+ L  E+  L  KL
Sbjct:   67 EKKRRLTTEQVHLLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSTYDQLLSNYDSIVMDNDKLRSEVTSLTEKL 164          
BLAST of DN621404 vs. ExPASy Swiss-Prot
Match: HOX13_ORYSJ (Homeobox-leucine zipper protein HOX13 OS=Oryza sativa subsp. japonica GN=HOX13 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.550e-32
Identity = 63/100 (63.00%), Postives = 86/100 (86.00%), Query Frame = 3
Query:  477 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLNYDSLSHDNEALL*EIRELKSKL 776
            + EKKRRL+++QV+ALE++F+ +NKL+P+RK ++A++LGLQPRQVAVWFQNRRARWKTKQLERD+  L+A +DAL+ + D+L  D +AL  EIREL+ KL
Sbjct:   69 LGEKKRRLALEQVRALERSFDTDNKLDPDRKARIARDLGLQPRQVAVWFQNRRARWKTKQLERDFAALRARHDALRADCDALRRDKDALAAEIRELREKL 168          
BLAST of DN621404 vs. ExPASy Swiss-Prot
Match: HOX13_ORYSI (Homeobox-leucine zipper protein HOX13 OS=Oryza sativa subsp. indica GN=HOX13 PE=2 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 8.744e-31
Identity = 63/101 (62.38%), Postives = 86/101 (85.15%), Query Frame = 3
Query:  477 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANY-DALKLNYDSLSHDNEALL*EIRELKSKL 776
            + EKKRRL+++QV+ALE++F+ +NKL+P+RK ++A++LGLQPRQVAVWFQNRRARWKTKQLERD+  L+A + DAL+ + D+L  D +AL  EIREL+ KL
Sbjct:   69 LGEKKRRLALEQVRALERSFDTDNKLDPDRKARIARDLGLQPRQVAVWFQNRRARWKTKQLERDFAALRAQHNDALRADCDALRRDKDALAAEIRELREKL 169          
The following BLAST results are available for this feature:
BLAST of DN621404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
ATHB6_ARATH1.214e-4867.28Homeobox-leucine zipper protein ATHB-6 OS=Arabidop... [more]
ATB16_ARATH3.423e-4360.74Homeobox-leucine zipper protein ATHB-16 OS=Arabido... [more]
ATHB5_ARATH7.625e-4359.17Homeobox-leucine zipper protein ATHB-5 OS=Arabidop... [more]
HOX4_ORYSJ1.066e-3674.49Homeobox-leucine zipper protein HOX4 OS=Oryza sati... [more]
HOX4_ORYSI1.066e-3674.49Homeobox-leucine zipper protein HOX4 OS=Oryza sati... [more]
HOX20_ORYSJ5.292e-3673.47Homeobox-leucine zipper protein HOX20 OS=Oryza sat... [more]
HOX20_ORYSI5.292e-3673.47Homeobox-leucine zipper protein HOX20 OS=Oryza sat... [more]
HAT5_ARATH2.718e-3269.39Homeobox-leucine zipper protein HAT5 OS=Arabidopsi... [more]
HOX13_ORYSJ3.550e-3263.00Homeobox-leucine zipper protein HOX13 OS=Oryza sat... [more]
HOX13_ORYSI8.744e-3162.38Homeobox-leucine zipper protein HOX13 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06K16_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006K16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621404 ID=DN621404; Name=DN621404; organism=Citrus sinensis; type=EST; length=779bp
TTTTTTTCCTGTTTTCGTTTAAATTCATTTTTATGGGTTCAGAGGGGCAA
CAAGTGTTAAATAGGGAGAAGAAATACGTTGAACTAAAGAGAGAAGAGGA
GTTGTTGTACAATTGTAGTATTATTATACAGAACAGCGCTCTATTTTCAG
ACACGGCAGCTGCTCTTTCAAGTCCTAAAGAAGAAACTCCTCTTAAAGCT
ACTTCTTAAAACTTGAGAGATCCACTTAAAAAAATAAAAAATCAAAAAAA
TTTCCGATCTAAGAAAATAGATCTGCTTACTACAGTCGGCTTCACTTCAT
CATCAGGCATGAAGCGATCACTTTGCAGCTCAGATGATTCCTTGGGTGCT
TTGATGTCCATCTGCCCAGCCACAGACGAGCAGAGTCCGAGAAACAACCA
AGTTTACAGTCGAGAATTCCAGACGATGTTGGACGGTCTGGATGAAGAGG
GGTGTTTAGAAGAATCCGGAGGGCACGTCTCGGAGAAAAAGAGGAGACTG
AGCGTGGATCAGGTGAAGGCCTTGGAGAAGAACTTCGAGGTGGAAAACAA
GCTTGAGCCCGAGAGAAAAGTGAAGTTGGCACAAGAACTTGGGCTGCAGC
CAAGACAAGTTGCTGTTTGGTTCCAAAACCGACGCGCTCGTTGGAAAACC
AAGCAACTTGAAAGAGATTACGGCGTTCTTAAGGCAAATTATGATGCTCT
CAAGCTCAATTATGACTCCCTCTCACACGACAATGAAGCCTTGCTTTAAG
AGATAAGAGAGCTGAAATCAAAGCTGAAT
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