DN621400

Overview
NameDN621400
Unique NameDN621400
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621400 vs. ExPASy Swiss-Prot
Match: TFDP1_MOUSE (Transcription factor Dp-1 OS=Mus musculus GN=Tfdp1 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.456e-34
Identity = 73/118 (61.86%), Postives = 92/118 (77.97%), Query Frame = 2
Query:  377 DKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQEL 730
            +K+G+GLR FSMKVCEKV+ KG T+YNEVADELVAEF+   N +  P++  YD+KNIRRRVYDALNVLMAM+IISK+KKEI+W GLP  S  + + L+ ER     RI++K + LQEL
Sbjct:  110 EKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVAEFSAADNHIL-PNESAYDQKNIRRRVYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQNLEVERQRRLERIKQKQSQLQEL 226          
BLAST of DN621400 vs. ExPASy Swiss-Prot
Match: TFDP1_HUMAN (Transcription factor Dp-1 OS=Homo sapiens GN=TFDP1 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.456e-34
Identity = 73/118 (61.86%), Postives = 92/118 (77.97%), Query Frame = 2
Query:  377 DKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQEL 730
            +K+G+GLR FSMKVCEKV+ KG T+YNEVADELVAEF+   N +  P++  YD+KNIRRRVYDALNVLMAM+IISK+KKEI+W GLP  S  + + L+ ER     RI++K + LQEL
Sbjct:  110 EKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVAEFSAADNHIL-PNESAYDQKNIRRRVYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQNLEVERQRRLERIKQKQSQLQEL 226          
BLAST of DN621400 vs. ExPASy Swiss-Prot
Match: TFDP2_HUMAN (Transcription factor Dp-2 OS=Homo sapiens GN=TFDP2 PE=1 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 7.601e-34
Identity = 74/118 (62.71%), Postives = 91/118 (77.12%), Query Frame = 2
Query:  377 DKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQEL 730
            DK+G+GLR FSMKVCEKV+ KG T+YNEVADELV+EF + +N LA      YD+KNIRRRVYDALNVLMAM+IISK+KKEI+W GLP  S  + + L+ E+     RI++K A LQEL
Sbjct:  126 DKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNHLAA--DSAYDQKNIRRRVYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQNLEIEKQRRIERIKQKRAQLQEL 241          
BLAST of DN621400 vs. ExPASy Swiss-Prot
Match: TFDP1_BOVIN (Transcription factor Dp-1 OS=Bos taurus GN=TFDP1 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.297e-33
Identity = 73/118 (61.86%), Postives = 92/118 (77.97%), Query Frame = 2
Query:  377 DKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQEL 730
            +K+G+GLR FSMKVCEKV+ KG T+YNEVADELVAEF+  ++S   P +  YD+KNIRRRVYDALNVLMAM+IISK+KKEI+W GLP  S  + + L+ ER     RI++K + LQEL
Sbjct:  110 EKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVAEFS-AADSHILPSESAYDQKNIRRRVYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQSLEVERQRRLERIKQKQSQLQEL 226          
BLAST of DN621400 vs. ExPASy Swiss-Prot
Match: TFDP_DROME (Transcription factor Dp OS=Drosophila melanogaster GN=Dp PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 5.637e-29
Identity = 68/118 (57.63%), Postives = 85/118 (72.03%), Query Frame = 2
Query:  377 DKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQEL 730
            DK+G+GLR FSMKVCEKVE KG+TTYNEVAD+LV+E  +  N+         D+KNIRRRVYDALNVLMA+++ISKDKKEI+W GLP  S      L+ E    R RI++K   L+E+
Sbjct:  164 DKAGKGLRHFSMKVCEKVEEKGKTTYNEVADDLVSE--EMKNNAY---DNNCDQKNIRRRVYDALNVLMAINVISKDKKEIRWIGLPANSTETFLALEEENCQRRERIKQKNEMLREM 276          
BLAST of DN621400 vs. ExPASy Swiss-Prot
Match: TFDP2_MOUSE (Transcription factor Dp-2 OS=Mus musculus GN=Tfdp2 PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.217e-25
Identity = 64/118 (54.24%), Postives = 82/118 (69.49%), Query Frame = 2
Query:  377 DKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQEL 730
            DK+G+GLR FSMKVCEKV+ KG T+YNEVADELV+EF + +N LA      YD++NIRRRVYDALNVLMAM+IIS      +   +   S  + + L+ E+     RI++K A LQEL
Sbjct:  126 DKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNHLAA--DSAYDQENIRRRVYDALNVLMAMNIISSLPTGKKRNQVDCNSAQECQNLEIEKQRRIERIKQKRAQLQEL 241          
BLAST of DN621400 vs. ExPASy Swiss-Prot
Match: TFDP1_CAEEL (Transcription factor dpl-1 OS=Caenorhabditis elegans GN=dpl-1 PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 3.781e-25
Identity = 62/115 (53.91%), Postives = 81/115 (70.43%), Query Frame = 2
Query:  392 GLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPD--QQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQEL 730
            GLR FS KVCEKV+ KG T YNEVADELVA++   +N +   D  +Q+YD KNIRRRVYDALNVL+AM+II+K KK+I+W GLP ++  +I  L+ E+      I  K   L+E+
Sbjct:   72 GLRHFSTKVCEKVKEKGLTNYNEVADELVADYFQ-NNLIKQIDVVKQEYDMKNIRRRVYDALNVLLAMNIITKSKKDIRWIGLPASASQEISRLEEEKSRREASISSKKQALEEM 185          
BLAST of DN621400 vs. ExPASy Swiss-Prot
Match: TFDP3_HUMAN (Transcription factor Dp family member 3 OS=Homo sapiens GN=TFDP3 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.460e-24
Identity = 60/118 (50.85%), Postives = 82/118 (69.49%), Query Frame = 2
Query:  377 DKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQEL 730
            +K+G GL + SMKV E V+ KG T+  EV  ELVA+F   SN  A+P++  YD KNI+RR YDALNVLMAM+IIS++KK+I+W GL   S  + + L+ ER     RI++K + LQ+L
Sbjct:  105 EKNGMGLCRLSMKVWETVQRKGTTSCQEVVGELVAKFRAASNH-ASPNESAYDVKNIKRRTYDALNVLMAMNIISREKKKIKWIGLTTNSAQNCQNLRVERQKRLERIKQKQSELQQL 221          
The following BLAST results are available for this feature:
BLAST of DN621400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
TFDP1_MOUSE4.456e-3461.86Transcription factor Dp-1 OS=Mus musculus GN=Tfdp1... [more]
TFDP1_HUMAN4.456e-3461.86Transcription factor Dp-1 OS=Homo sapiens GN=TFDP1... [more]
TFDP2_HUMAN7.601e-3462.71Transcription factor Dp-2 OS=Homo sapiens GN=TFDP2... [more]
TFDP1_BOVIN1.297e-3361.86Transcription factor Dp-1 OS=Bos taurus GN=TFDP1 P... [more]
TFDP_DROME5.637e-2957.63Transcription factor Dp OS=Drosophila melanogaster... [more]
TFDP2_MOUSE2.217e-2554.24Transcription factor Dp-2 OS=Mus musculus GN=Tfdp2... [more]
TFDP1_CAEEL3.781e-2553.91Transcription factor dpl-1 OS=Caenorhabditis elega... [more]
TFDP3_HUMAN5.460e-2450.85Transcription factor Dp family member 3 OS=Homo sa... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_06K14_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006K14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621400 ID=DN621400; Name=DN621400; organism=Citrus sinensis; type=EST; length=731bp
TTTTATCACGCATAGCAATACTAATGCTCAAAACCCCATAAAAAAATTTA
CTAAGAATCGATTGATTAATTGATAATTTTTACTCTTTTTTGTATTTATG
GTTACTGGGAATAACAGCCACCAGGAGGATGGTGACCGCCAACAACCGGC
AGCCAAAGGGGGAGGGGCTACGCGGTCGTGGGGCACCACCGTTTCCGGCC
AATCAGTCTCTACAAGCGGCAGCGTGGGGTCGCCGTCGCAAAGCATGGCT
ACGCCAGCAAGTGATAGCACCTTTCTCCGGCTAAACCACCTTGACATTCA
CGGTGATGATGCCGGCTCCCAAGGCGCTGTTGTCGGTGGCAAGAAGAAAA
AGAGAGGTCAAAGGGCGGGCGGAGGAGATAAAAGTGGCCGAGGACTTCGC
CAATTTAGCATGAAAGTGTGTGAGAAAGTGGAAAGCAAGGGAAGAACTAC
ATACAATGAGGTTGCAGATGAGCTTGTGGCTGAATTTGCTGATCCTAGCA
ATAGTTTAGCAACCCCAGATCAGCAACAATATGATGAGAAAAACATAAGA
CGAAGGGTATATGATGCCCTAAATGTACTGATGGCGATGGATATTATATC
AAAGGATAAAAAGGAAATACAGTGGAAGGGTCTTCCTCGCACTAGCCTGA
ATGACATTGAAGAATTAAAGGCTGAGCGTCTTGGACTGAGAAATAGAATT
GAAAAGAAAACTGCCTATCTGCAGGAACTGG
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