DN621396

Overview
NameDN621396
Unique NameDN621396
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length734
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN621396_ssr363 microsatellite DN621396_ssr363:363..372. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7036 contig Csv1_Contig7036:537..1270. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN621396 vs. ExPASy Swiss-Prot
Match: PIS1_ARATH (CDP-diacylglycerol--inositol 3-phosphatidyltransferase 1 OS=Arabidopsis thaliana GN=PIS1 PE=1 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 2.213e-57
Identity = 104/134 (77.61%), Postives = 123/134 (91.79%), Query Frame = -1
Query:  333 VYRPGLVFVSLLALDIGSHWLQMYSTFLTGKTNHKDVKDSTNWLFKAYYGNRMFMGYCCVACEVLYLILFLIAGKQSESLVDVVASTVRQGSPLSFLVALSLFGWAIKQTINVIQMKTAADVCVLYDIEKKQKP 734
            +YRP LVF+SLLALDI SHWLQMYSTFL GK++HKDVKDST+WLF+ YYGNR+FM YCCV+CEVLY+IL LIA  QSE+L++VV +T+ Q SPLSFL+AL+LFGW++KQTINVIQMKTAADVCVLYDIEK+QKP
Sbjct:   94 IYRPSLVFLSLLALDIASHWLQMYSTFLAGKSSHKDVKDSTSWLFRLYYGNRIFMCYCCVSCEVLYIILLLIAKNQSENLLNVVVATLTQISPLSFLLALTLFGWSMKQTINVIQMKTAADVCVLYDIEKQQKP 227          
BLAST of DN621396 vs. ExPASy Swiss-Prot
Match: PIS2_ARATH (Probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 OS=Arabidopsis thaliana GN=PIS2 PE=2 SV=2)

HSP 1 Score: 218.394 bits (555), Expect = 3.196e-56
Identity = 102/133 (76.69%), Postives = 120/133 (90.23%), Query Frame = -1
Query:  336 VYRPGLVFVSLLALDIGSHWLQMYSTFLTGKTNHKDVKDSTNWLFKAYYGNRMFMGYCCVACEVLYLILFLIAGKQSESLVDVVASTVRQGSPLSFLVALSLFGWAIKQTINVIQMKTAADVCVLYDIEKKQK 734
            +YRP LVF+SLLALDI SHWLQMYSTFL+GKT+HKDVKDST+WLF+ YYGNRMFMGYCCV+CEVLY+IL LIA  Q+E+L++VV  ++ Q SPLS L+ALS+FGW+IKQ INVIQMKTAADVCVLYDIEK+ K
Sbjct:   91 IYRPSLVFLSLLALDIASHWLQMYSTFLSGKTSHKDVKDSTSWLFRLYYGNRMFMGYCCVSCEVLYIILLLIATNQTENLMNVVVKSLMQISPLSLLLALSIFGWSIKQIINVIQMKTAADVCVLYDIEKQHK 223          
BLAST of DN621396 vs. ExPASy Swiss-Prot
Match: YAT8_SCHPO (Uncharacterized CDP-alcohol phosphatidyltransferase class-I family protein C1D4.08 OS=Schizosaccharomyces pombe GN=SPAC1D4.08 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.735e-13
Identity = 43/135 (31.85%), Postives = 73/135 (54.07%), Query Frame = -1
Query:  339 LVFVSLLALDIGSHWLQMYSTFLTGKTNHKDVKDSTNWLFKAYYGNRMFMGYCCVACEVLYLILFLIA----GKQSESLVDVVASTVRQGS-PLSFLVALSLFGWAI---KQTINVIQMKTAADVCVLYDIEKKQ 719
            ++F  L++LD+ SH++ MYST   G ++HK V    NW+ + YYGN   +   C A E+ ++ L+L++           + V +     G  PLS+   L++    I   KQ INV+Q+  AA+  V  D+E+++
Sbjct:  111 IIFQLLVSLDLASHYMHMYSTLHQGASSHKTVTKKHNWMLRLYYGNNKVLFIFCAANEMFFVALYLLSFTPRTPPKLGYLPVPSFIYSTGELPLSYPTLLAVLCGPICLAKQIINVVQLVNAANALVKMDVEQRR 245          
The following BLAST results are available for this feature:
BLAST of DN621396 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PIS1_ARATH2.213e-5777.61CDP-diacylglycerol--inositol 3-phosphatidyltransfe... [more]
PIS2_ARATH3.196e-5676.69Probable CDP-diacylglycerol--inositol 3-phosphatid... [more]
YAT8_SCHPO9.735e-1331.85Uncharacterized CDP-alcohol phosphatidyltransferas... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_06K12_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006K12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621396 ID=DN621396; Name=DN621396; organism=Citrus sinensis; type=EST; length=734bp
TTTTTTTTTTTTTTTTTGGCGAAAGAGAAACCAGTAAAGAGTTCCCAATC
ACAAAATTATCATTATCCCAGTTGTAGAATTGCCATTATGTTAATGGCAC
AAAACTACGTGATTGAAGGAATGCTTACACTCATATACCAGAAAAAAACC
CTTTCCCCAAATTAATTCCAAAATCCAAATCCTTCTTTAGAGGAGCCTCA
GATCAACTGTAAAAGTTTAGTGATTTCATCTGCCGGTCTCAACATATATG
CTTGCACACTGAAAAGTAGGCACTCGAGCAGGAGAACCACAAACAGATTC
TTCTGAAATGGAAAATGTTGATGAACTCTTTAAGGCTTTTGCTTTTTCTC
GATGTCATATAGCACACACACATCTGCTGCTGTCTTCATCTGTATGACAT
TGATCGTTTGTTTGATTGCCCATCCGAATAAACTCAATGCAACTAGGAAG
GAAAGGGGCGAACCCTGTCGCACAGTACTCGCCACAACATCCACCAAACT
TTCACTCTGCTTCCCCGCAATAAGAAATAGGATTAGGTAAAGAACCTCAC
ATGCCACACAACAATAACCCATAAACATCCGGTTCCCATAATATGCTTTG
AAAAGCCAATTTGTGCTGTCTTTTACATCTTTATGGTTAGTTTTTCCTGT
CAAGAATGTACTGTACATCTGCAGCCAGTGACTACCAATATCTAACGCAA
GTAGTGACACAAAAACCAAACCAGGCCTGTATAC
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