DN621358

Overview
NameDN621358
Unique NameDN621358
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length632
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN621358_ssr80 microsatellite DN621358_ssr80:80..94. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4056 contig Csv1_Contig4056:37..668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN621358 vs. ExPASy Swiss-Prot
Match: GDIA_RAT (Rab GDP dissociation inhibitor alpha OS=Rattus norvegicus GN=Gdi1 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 6.663e-30
Identity = 59/120 (49.17%), Postives = 85/120 (70.83%), Query Frame = -1 
Query:  273 PIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 632
            PI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  ET  P+ E++P ++LL P+D+ F  I D YEP+++ S    F S SYDATTHFE+T  D+ ++Y  + G
Sbjct:  307 PIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETAEPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIKDIYKRMAG 426
[Close]
BLAST of DN621358 vs. ExPASy Swiss-Prot
Match: GDIA_MOUSE (Rab GDP dissociation inhibitor alpha OS=Mus musculus GN=Gdi1 PE=1 SV=3)

HSP 1 Score: 130.568 bits (327), Expect = 6.663e-30
Identity = 59/120 (49.17%), Postives = 85/120 (70.83%), Query Frame = -1 
Query:  273 PIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 632
            PI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  ET  P+ E++P ++LL P+D+ F  I D YEP+++ S    F S SYDATTHFE+T  D+ ++Y  + G
Sbjct:  307 PIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETAEPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIKDIYKRMAG 426
[Close]
BLAST of DN621358 vs. ExPASy Swiss-Prot
Match: GDIA_CANFA (Rab GDP dissociation inhibitor alpha OS=Canis familiaris GN=GDI1 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 6.663e-30
Identity = 59/120 (49.17%), Postives = 85/120 (70.83%), Query Frame = -1 
Query:  273 PIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 632
            PI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  ET  P+ E++P ++LL P+D+ F  I D YEP+++ S    F S SYDATTHFE+T  D+ ++Y  + G
Sbjct:  307 PIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETAEPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIKDIYKRMAG 426
[Close]
BLAST of DN621358 vs. ExPASy Swiss-Prot
Match: GDIA_BOVIN (Rab GDP dissociation inhibitor alpha OS=Bos taurus GN=GDI1 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 6.663e-30
Identity = 59/120 (49.17%), Postives = 85/120 (70.83%), Query Frame = -1 
Query:  273 PIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 632
            PI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  ET  P+ E++P ++LL P+D+ F  I D YEP+++ S    F S SYDATTHFE+T  D+ ++Y  + G
Sbjct:  307 PIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIKDIYKRMAG 426
[Close]
BLAST of DN621358 vs. ExPASy Swiss-Prot
Match: GDIA_PONPY (Rab GDP dissociation inhibitor alpha OS=Pongo pygmaeus GN=GDI1 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.532e-29
Identity = 58/120 (48.33%), Postives = 84/120 (70.00%), Query Frame = -1 
Query:  273 PIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 632
            PI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  ET  P+ E++P ++LL P+D+ F  I D YEP+++      F S SYDATTHFE+T  D+ ++Y  + G
Sbjct:  307 PIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTCNDIKDIYKRMAG 426
[Close]
BLAST of DN621358 vs. ExPASy Swiss-Prot
Match: GDIA_PANTR (Rab GDP dissociation inhibitor alpha OS=Pan troglodytes GN=GDI1 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.532e-29
Identity = 58/120 (48.33%), Postives = 84/120 (70.00%), Query Frame = -1 
Query:  273 PIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 632
            PI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  ET  P+ E++P ++LL P+D+ F  I D YEP+++      F S SYDATTHFE+T  D+ ++Y  + G
Sbjct:  307 PIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTCNDIKDIYKRMAG 426
[Close]
BLAST of DN621358 vs. ExPASy Swiss-Prot
Match: GDIA_MACFA (Rab GDP dissociation inhibitor alpha OS=Macaca fascicularis GN=GDI1 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.532e-29
Identity = 58/120 (48.33%), Postives = 84/120 (70.00%), Query Frame = -1 
Query:  273 PIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 632
            PI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  ET  P+ E++P ++LL P+D+ F  I D YEP+++      F S SYDATTHFE+T  D+ ++Y  + G
Sbjct:  307 PIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTCNDIKDIYKRMAG 426
[Close]
BLAST of DN621358 vs. ExPASy Swiss-Prot
Match: GDIA_HUMAN (Rab GDP dissociation inhibitor alpha OS=Homo sapiens GN=GDI1 PE=1 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 2.532e-29
Identity = 58/120 (48.33%), Postives = 84/120 (70.00%), Query Frame = -1 
Query:  273 PIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 632
            PI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  ET  P+ E++P ++LL P+D+ F  I D YEP+++      F S SYDATTHFE+T  D+ ++Y  + G
Sbjct:  307 PIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTCNDIKDIYKRMAG 426
[Close]
BLAST of DN621358 vs. ExPASy Swiss-Prot
Match: GDI1_YEAST (Rab GDP-dissociation inhibitor OS=Saccharomyces cerevisiae GN=GDI1 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.319e-29
Identity = 58/120 (48.33%), Postives = 85/120 (70.83%), Query Frame = -1 
Query:  273 PIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 632
            P+PNT+++ S+Q+I+PQ QLGR+SD+Y+   S +HNV  KG ++A +ST  ETD P  EL+P   LLGP++E F  I + +EP  + S DN ++S SYDA++HFES   DV ++Y  +TG
Sbjct:  318 PVPNTSNADSLQIIIPQSQLGRKSDIYVAIVSDAHNVCSKGHYLAIISTIIETDKPHIELEPAFKLLGPIEEKFMGIAELFEPREDGSKDNIYLSRSYDASSHFESMTDDVKDIYFRVTG 437
[Close]
BLAST of DN621358 vs. ExPASy Swiss-Prot
Match: GDIB_HUMAN (Rab GDP dissociation inhibitor beta OS=Homo sapiens GN=GDI2 PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 4.775e-28
Identity = 57/120 (47.50%), Postives = 84/120 (70.00%), Query Frame = -1 
Query:  273 PIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 632
            PI NTND++S Q+I+PQ Q+ R+SD+Y+   S++HNVA +GK+IA VST  ET  P+ E++P ++LL P+++ F  I D   P +  +    FIS +YDATTHFE+T  D+ N+Y  +TG
Sbjct:  307 PIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETKEPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTCDDIKNIYKRMTG 426
The following BLAST results are available for this feature:
BLAST of DN621358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
GDIA_RAT6.663e-3049.17Rab GDP dissociation inhibitor alpha OS=Rattus nor... [more]
GDIA_MOUSE6.663e-3049.17Rab GDP dissociation inhibitor alpha OS=Mus muscul... [more]
GDIA_CANFA6.663e-3049.17Rab GDP dissociation inhibitor alpha OS=Canis fami... [more]
GDIA_BOVIN6.663e-3049.17Rab GDP dissociation inhibitor alpha OS=Bos taurus... [more]
GDIA_PONPY2.532e-2948.33Rab GDP dissociation inhibitor alpha OS=Pongo pygm... [more]
GDIA_PANTR2.532e-2948.33Rab GDP dissociation inhibitor alpha OS=Pan troglo... [more]
GDIA_MACFA2.532e-2948.33Rab GDP dissociation inhibitor alpha OS=Macaca fas... [more]
GDIA_HUMAN2.532e-2948.33Rab GDP dissociation inhibitor alpha OS=Homo sapie... [more]
GDI1_YEAST4.319e-2948.33Rab GDP-dissociation inhibitor OS=Saccharomyces ce... [more]
GDIB_HUMAN4.775e-2847.50Rab GDP dissociation inhibitor beta OS=Homo sapien... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06J16_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006J16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621358 ID=DN621358; Name=DN621358; organism=Citrus sinensis; type=EST; length=632bp
TTTTTTTTTTTTTTTTGATGCATGTTTGAAATCTACACATTAGTTCCCAC
GGCGAACAATTAAAACAAGATTCCATTACATAATAATAATAATAAAATCA
CCAACTATGAGAAACAGAAACCATGACAAAGTCCAAGTGTCCAACCCCCA
CATTCTTTCGAGCTTTATCCCACTGACGGCATTACATGCGCAAACATGAA
CGGGGAGTTGCAGATTCCTCATTCTTCTGCAGCACTGGCAGCACTTAAAT
CCACACTGAGGTCAAGAACCTTTCCGGTTATCATGGTATACATGTTCAGT
ACATCCGTGACAGTTGACTCAAAGTGTGTTGTGGCATCATAGCTCGTTGA
GATAAAGCAATTGTCCAAAGAAGGTTCATTAACTGGTTCATATCTGTCAT
ATATATCATAGAATATTTCATCGACTGGACCCAAAAGATCAATTCCAGGC
TTAAGTTCAGTCTGTGGATGATCAGTCTCTGCCTCAGTCGATACGAATGC
AATGAATTTGCCCTTTGGAGCAACATTGTGGGAGTAGGAACAACAGAAGA
GGTACATGTCTGATCTACGACCCAACTGTTTTTGCGGAAGGATAACCTGC
ACTGAATGGGAATCATTGGTGTTTGGGATTGG
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