FC922060

Overview
NameFC922060
Unique NameFC922060
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length457
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC922060 vs. ExPASy Swiss-Prot
Match: RUBB_ARATH (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Arabidopsis thaliana GN=At1g55490 PE=1 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 1.778e-17
Identity = 41/45 (91.11%), Postives = 43/45 (95.56%), Query Frame = 1
Query:    1 VRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 135
            VRCCLEHA+SVAKTFLMSDCVVVEIKEPEP +P GNPMDNSGYGY
Sbjct:  557 VRCCLEHAASVAKTFLMSDCVVVEIKEPEP-VPVGNPMDNSGYGY 600          
BLAST of FC922060 vs. ExPASy Swiss-Prot
Match: RUBB_PEA (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.965e-16
Identity = 41/44 (93.18%), Postives = 41/44 (93.18%), Query Frame = 1
Query:    1 VRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 132
            VRCCLEHASSVAKTFLMSDCVVVEIKEPE A P GNPMDNSGYG
Sbjct:  551 VRCCLEHASSVAKTFLMSDCVVVEIKEPESA-PVGNPMDNSGYG 593          
BLAST of FC922060 vs. ExPASy Swiss-Prot
Match: RUBB_SECCE (RuBisCO large subunit-binding protein subunit beta, chloroplastic (Fragment) OS=Secale cereale GN=CPN60 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 9.129e-14
Identity = 37/45 (82.22%), Postives = 39/45 (86.67%), Query Frame = 1
Query:    1 VRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 135
            VRCCLEHA+SVAKTFL SD VVVEIKEPE A P  NPMDNSG+GY
Sbjct:  456 VRCCLEHAASVAKTFLTSDVVVVEIKEPE-AAPLANPMDNSGFGY 499          
The following BLAST results are available for this feature:
BLAST of FC922060 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RUBB_ARATH1.778e-1791.11RuBisCO large subunit-binding protein subunit beta... [more]
RUBB_PEA1.965e-1693.18RuBisCO large subunit-binding protein subunit beta... [more]
RUBB_SECCE9.129e-1482.22RuBisCO large subunit-binding protein subunit beta... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAM1DA12RM1 SLH Citrus sinensis cDNA clone KN0AAM1DA12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC922060 ID=FC922060; Name=FC922060; organism=Citrus sinensis; type=EST; length=457bp
GTTAGATGTTGCTTGGAGCATGCTTCCTCGGTGGCAAAAACCTTCTTGAT
GTCCGACTGTGTGGTGGTTGAGATCAAGGAGCCTGAACCCGCTATGCCTG
CGGGTAACCCTATGGACAACTCAGGATATGGATACTAAGCTAATTAACAA
GGTCACGGGAGGCAAGCAAATAAGGTTCTGACTTCGTTATAGCAACTATC
TTTCAGTTTGACAGCGTTGGGTTCTCTTCTTCTTGTAAATTCAATTACTC
GACTTAGTAGAGTTTATGGATTCTGGTGAGGATAGCTTGCCAGAGTACGG
CTCGTATTAATTTGCAATTAGATGTACAATTGCAATGATTTTGAACTTTT
TGAGTGAAAGAAATTTTATTTTGCTCATCTCCTTCACAGTCTGATACTAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA
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