DN621355

Overview
NameDN621355
Unique NameDN621355
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6033 contig Csv1_Contig6033:1183..1909. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN621355 vs. ExPASy Swiss-Prot
Match: GP108_HUMAN (Protein GPR108 OS=Homo sapiens GN=GPR108 PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 3.367e-26
Identity = 52/111 (46.85%), Postives = 75/111 (67.57%), Query Frame = -3
Query:  387 DWITWKQXXXXXXXXXXXXXLFPIVWSIKNLREAARTDGKAAVNLMKLTLFRQYYIVVICYIYFTRVVVYALETITSYKYLWTSVVAGELATLAFYVFTGYKFKPEAHNPY 719
            D++ WK+             LFP+VWSI++L++A+ TDGK AVNL KL LFR YY++VICY+YFTR++   L+    +++ W   +  E +TLAF+V TGYKF+P  +NPY
Sbjct:  394 DYVLWKEILFLVDLICCGAILFPVVWSIRHLQDASGTDGKVAVNLAKLKLFRHYYVMVICYVYFTRIIAILLQVAVPFQWQWLYQLLVEGSTLAFFVLTGYKFQPTGNNPY 504          
BLAST of DN621355 vs. ExPASy Swiss-Prot
Match: GP107_MOUSE (Protein GPR107 OS=Mus musculus GN=Gpr107 PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 4.397e-26
Identity = 51/107 (47.66%), Postives = 72/107 (67.29%), Query Frame = -3
Query:  387 WKQXXXXXXXXXXXXXLFPIVWSIKNLREAARTDGKAAVNLMKLTLFRQYYIVVICYIYFTRVVVYALETITSYKYLWTSVVAGELATLAFYVFTGYKFKPEAHNPY 707
            WK              LFP+VWSI++L+EA+ TDGKAA+NL KL LFR YY++++CYIYFTR++ + L+    +++ W   +  E ATL F+V TGYKF+P + NPY
Sbjct:  399 WKDSLFLVDLLCCGAILFPVVWSIRHLQEASATDGKAAINLAKLRLFRHYYVLIVCYIYFTRIIAFLLKFAVPFQWKWLYQLLDETATLVFFVLTGYKFRPASDNPY 505          
BLAST of DN621355 vs. ExPASy Swiss-Prot
Match: GP108_BOVIN (Protein GPR108 OS=Bos taurus GN=GPR108 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.182e-25
Identity = 53/111 (47.75%), Postives = 73/111 (65.77%), Query Frame = -3
Query:  387 DWITWKQXXXXXXXXXXXXXLFPIVWSIKNLREAARTDGKAAVNLMKLTLFRQYYIVVICYIYFTRVVVYALETITSYKYLWTSVVAGELATLAFYVFTGYKFKPEAHNPY 719
            D+  WK+             LFP+VWSI++L++A+ TDGK AVNL KL LFR YY++VICYIYFTR++   L  +  +++ W   +  E +TLAF+V TGYKF+P   NPY
Sbjct:  399 DYGIWKEILFLVDLICCGTILFPVVWSIRHLQDASGTDGKVAVNLAKLKLFRHYYVMVICYIYFTRIIAILLRAVVPFQWQWLYQLLVEGSTLAFFVLTGYKFQPARDNPY 509          
BLAST of DN621355 vs. ExPASy Swiss-Prot
Match: GP108_MOUSE (Protein GPR108 OS=Mus musculus GN=Gpr108 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.723e-25
Identity = 52/111 (46.85%), Postives = 73/111 (65.77%), Query Frame = -3
Query:  387 DWITWKQXXXXXXXXXXXXXLFPIVWSIKNLREAARTDGKAAVNLMKLTLFRQYYIVVICYIYFTRVVVYALETITSYKYLWTSVVAGELATLAFYVFTGYKFKPEAHNPY 719
            D+  WK+             LFP+VWSI++L++A+ TDGK AVNL +L LFR YY++VICYIYFTR++   L+    +++ W   +  E +TLAF+V TGYKF+P   NPY
Sbjct:  420 DYGLWKEILFLVDLICCGAILFPVVWSIRHLQDASGTDGKVAVNLARLKLFRHYYVMVICYIYFTRIIAILLQVAVPFQWQWLYQLLVESSTLAFFVLTGYKFQPAGDNPY 530          
BLAST of DN621355 vs. ExPASy Swiss-Prot
Match: GP108_RAT (Protein GPR108 OS=Rattus norvegicus GN=Gpr108 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.350e-25
Identity = 52/111 (46.85%), Postives = 72/111 (64.86%), Query Frame = -3
Query:  387 DWITWKQXXXXXXXXXXXXXLFPIVWSIKNLREAARTDGKAAVNLMKLTLFRQYYIVVICYIYFTRVVVYALETITSYKYLWTSVVAGELATLAFYVFTGYKFKPEAHNPY 719
            D+  WK+             LFP+VWSI++L++A+ TDGK A+NL KL LFR YY++VICYIYFTR++   L     +++ W   +  E +TLAF+V TGYKF+P   NPY
Sbjct:  427 DYGLWKEILFLVDLICCGAILFPVVWSIRHLQDASGTDGKVAMNLAKLKLFRHYYVMVICYIYFTRIIAILLRVAVPFQWQWLYQLLVESSTLAFFVLTGYKFQPAGDNPY 537          
BLAST of DN621355 vs. ExPASy Swiss-Prot
Match: GP107_HUMAN (Protein GPR107 OS=Homo sapiens GN=GPR107 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.337e-19
Identity = 51/155 (32.90%), Postives = 72/155 (46.45%), Query Frame = -3
Query:  387 WKQXXXXXXXXXXXXXLFPIVWSIKNLREAARTDGK------------------------------------------------AAVNLMKLTLFRQYYIVVICYIYFTRVVVYALETITSYKYLWTSVVAGELATLAFYVFTGYKFKPEAHNPY 707
            WK              LFP+VWSI++L+EA+ TDGK                                                AA+NL KL LFR YY++++CYIYFTR++ + L+    +++ W   +  E ATL F+V TGYKF+P + NPY
Sbjct:  400 WKDSLFLVDLLCCGAILFPVVWSIRHLQEASATDGKGDSMGPLQQRANLRAGSRIESHHFAQADLELLASSCPPASVSQRAGITAAINLAKLKLFRHYYVLIVCYIYFTRIIAFLLKLAVPFQWKWLYQLLDETATLVFFVLTGYKFRPASDNPY 554          
The following BLAST results are available for this feature:
BLAST of DN621355 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
GP108_HUMAN3.367e-2646.85Protein GPR108 OS=Homo sapiens GN=GPR108 PE=2 SV=2[more]
GP107_MOUSE4.397e-2647.66Protein GPR107 OS=Mus musculus GN=Gpr107 PE=2 SV=2[more]
GP108_BOVIN2.182e-2547.75Protein GPR108 OS=Bos taurus GN=GPR108 PE=2 SV=1[more]
GP108_MOUSE3.723e-2546.85Protein GPR108 OS=Mus musculus GN=Gpr108 PE=2 SV=1[more]
GP108_RAT6.350e-2546.85Protein GPR108 OS=Rattus norvegicus GN=Gpr108 PE=2... [more]
GP107_HUMAN2.337e-1932.90Protein GPR107 OS=Homo sapiens GN=GPR107 PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_06J15_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006J15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621355 ID=DN621355; Name=DN621355; organism=Citrus sinensis; type=EST; length=727bp
TTTTTTTTTTTTTTTTTCCCATCAGAATAACTATGTGCTGCATATATTTT
ATTTCTTTCTTCAAGGCTATGAAATGTCTAGTTTTTCATTTGATTACACA
TCATCCACATTAGATAATTTGAAATAAAAGCACAATCATTTCTCAAAAAG
AAATTCAAATATCATGTATGAGTATTACATGTACTATAAGATTCACAGAC
ATATATCAAAGTTGAAAAAAGTAACCTACTAATTCCACCAGACAAAAACG
AACCAATATGAGTAGGCAAGATTTCTACCTCGAGTCTCCTACTCTCCCAT
TTGGATGGTGTCAATCACAATTCAAACTCCTCTTCAAGCTTCAATGCCTC
AGCAGCAGCCTCTTCCTCCTCATCATCAATCACAAAGTACGGATTATGTG
CCTCGGGCTTAAACTTGTAACCGGTGAACACATAAAATGCCAGCGTGGCC
AATTCTCCAGCCACCACGCTTGTCCACAGATACTTGTAGGAAGTAATAGT
CTCAAGTGCATAGACCACCACCCGAGTAAAGTAAATGTAGCAGATAACCA
CAATATAGTACTGTCTGAACAGTGTGAGCTTCATCAAATTAACCGCGGCT
TTGCCGTCAGTCCTGGCAGCCTCACGCAGGTTCTTGATCGACCAAACGAT
GGGGAACAAAACGGCACAGCAACACACAACATCCACAAGCAAGAATACTT
GCTTCCACGTGATCCAATCCTGACCAT
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