DN621335

Overview
NameDN621335
Unique NameDN621335
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN621335_ssr255 microsatellite DN621335_ssr255:255..266. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13412 contig Csv1_Contig13412:302..985. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN621335 vs. ExPASy Swiss-Prot
Match: Y2197_ARATH (Probable protein kinase At2g41970 OS=Arabidopsis thaliana GN=At2g41970 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.112e-36
Identity = 78/104 (75.00%), Postives = 84/104 (80.77%), Query Frame = -2
Query:  372 KSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVKQCVDPKLKGEYXXXXXXXXXXXXXLCVQYEAEFRPNMSIVVKALQPLLKSPPPAAPVS 683
            KSDVYSFGVVLLELLTGRKPVDHTMP+GQQSLVTWATPRLSEDKVKQC+DPKL  ++             LCVQYEA+FRPNM+IVVKALQPLL S  PA P S
Sbjct:  261 KSDVYSFGVVLLELLTGRKPVDHTMPKGQQSLVTWATPRLSEDKVKQCIDPKLNNDFPPKAVAKLAAVAALCVQYEADFRPNMTIVVKALQPLLNS-KPAGPES 363          
BLAST of DN621335 vs. ExPASy Swiss-Prot
Match: PTI1_SOLLC (Pto-interacting protein 1 OS=Solanum lycopersicum GN=PTI1 PE=1 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 4.225e-36
Identity = 76/100 (76.00%), Postives = 81/100 (81.00%), Query Frame = -2
Query:  384 KSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVKQCVDPKLKGEYXXXXXXXXXXXXXLCVQYEAEFRPNMSIVVKALQPLLKSPPPA 683
            KSDVYSFGVVLLELLTGRKPVDHT+PRGQQSLVTWATPRLSEDKVKQCVD +L  +Y             LCVQYEA+FRPNMSIVVKALQPLL  P P+
Sbjct:  255 KSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPRLSEDKVKQCVDARLNTDYPPKAIAKMAAVAALCVQYEADFRPNMSIVVKALQPLLPRPVPS 354          
BLAST of DN621335 vs. ExPASy Swiss-Prot
Match: Y2706_ARATH (Probable receptor-like protein kinase At2g47060 OS=Arabidopsis thaliana GN=At2g47060 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.359e-34
Identity = 73/96 (76.04%), Postives = 79/96 (82.29%), Query Frame = -2
Query:  396 KSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVKQCVDPKLKGEYXXXXXXXXXXXXXLCVQYEAEFRPNMSIVVKALQPLLKS 683
            KSDVYSFGVVLLELLTGRKPVDH +PRGQQSLVTWATP+LSEDKVKQCVD +L G+Y             LCVQYEA+FRPNMSIVVKALQPLL +
Sbjct:  260 KSDVYSFGVVLLELLTGRKPVDHRLPRGQQSLVTWATPKLSEDKVKQCVDARLGGDYPPKAVAKLAAVAALCVQYEADFRPNMSIVVKALQPLLNA 355          
BLAST of DN621335 vs. ExPASy Swiss-Prot
Match: SRF7_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 7 OS=Arabidopsis thaliana GN=SRF7 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.613e-19
Identity = 55/96 (57.29%), Postives = 64/96 (66.67%), Query Frame = -2
Query:  399 KSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSE-DKVKQCVDPKLKGEYXXXXXXXXXXXXXLCVQYEAEFRPNMSIVVKALQPLLK 683
            KSDVYSFGVV+LELLTGRKP D T  R +QSLV WATP+L + D + + VDP LKG Y             LCVQ E EFRP MS VV+AL  L++
Sbjct:  600 KSDVYSFGVVMLELLTGRKPFDSTRSRSEQSLVRWATPQLHDIDALGKMVDPALKGLYPVKSLSRFADVIALCVQPEPEFRPPMSEVVQALVVLVQ 695          
BLAST of DN621335 vs. ExPASy Swiss-Prot
Match: SRF6_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana GN=SRF6 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.613e-19
Identity = 54/96 (56.25%), Postives = 64/96 (66.67%), Query Frame = -2
Query:  399 KSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSE-DKVKQCVDPKLKGEYXXXXXXXXXXXXXLCVQYEAEFRPNMSIVVKALQPLLK 683
            KSD+YSFGVV+LELLTGRKP D T  R +QSLV WATP+L + D + + VDP LKG Y             LCVQ E EFRP MS VV+AL  L++
Sbjct:  597 KSDIYSFGVVMLELLTGRKPFDSTRSRSEQSLVRWATPQLHDIDALAKMVDPALKGLYPVKSLSRFADVIALCVQPEPEFRPPMSEVVQALVVLVQ 692          
BLAST of DN621335 vs. ExPASy Swiss-Prot
Match: SRF8_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsis thaliana GN=SRF8 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.973e-18
Identity = 50/96 (52.08%), Postives = 63/96 (65.62%), Query Frame = -2
Query:  399 KSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSE-DKVKQCVDPKLKGEYXXXXXXXXXXXXXLCVQYEAEFRPNMSIVVKALQPLLK 683
            KSDVY+FGVV+LELLTGRKP+D +  R +QSLV WATP+L + D + + VDP L G Y             LC+Q E EFRP MS VV+ L  L++
Sbjct:  579 KSDVYTFGVVMLELLTGRKPLDSSRTRAEQSLVRWATPQLHDIDALSKMVDPSLNGMYPAKSLSRFADIIALCIQPEPEFRPPMSEVVQQLVRLVQ 674          
BLAST of DN621335 vs. ExPASy Swiss-Prot
Match: SRF5_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsis thaliana GN=SRF5 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.393e-17
Identity = 50/91 (54.95%), Postives = 57/91 (62.64%), Query Frame = -2
Query:  414 KSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSE-DKVKQCVDPKLKGEYXXXXXXXXXXXXXLCVQYEAEFRPNMSIVVKAL 683
            KSDVYSFGVV+LELLTGR P D   PR ++SLV WATP+L + D +    DP L G Y             LCVQ E EFRP MS VV+AL
Sbjct:  582 KSDVYSFGVVMLELLTGRVPFDGEKPRPERSLVRWATPQLHDIDALSNIADPALHGLYPPKSLSRFADIIALCVQVEPEFRPPMSEVVEAL 672          
BLAST of DN621335 vs. ExPASy Swiss-Prot
Match: SRF1_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsis thaliana GN=SRF1 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.278e-16
Identity = 47/96 (48.96%), Postives = 59/96 (61.46%), Query Frame = -2
Query:  399 KSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSE-DKVKQCVDPKLKGEYXXXXXXXXXXXXXLCVQYEAEFRPNMSIVVKALQPLLK 683
            K DVYSFGVV+LELLTGRK  D    RG+Q LV WA P+L + D + + VDP LKG+Y              CVQ E E+RP MS VV+ L  +++
Sbjct:  662 KCDVYSFGVVMLELLTGRKSYDKKRDRGEQFLVRWAIPQLHDIDALAKMVDPSLKGDYPAKSLSHFADVISRCVQSEPEYRPLMSEVVQDLSDMIQ 757          
BLAST of DN621335 vs. ExPASy Swiss-Prot
Match: SRF4_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 4 OS=Arabidopsis thaliana GN=SRF4 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.284e-16
Identity = 47/95 (49.47%), Postives = 59/95 (62.11%), Query Frame = -2
Query:  402 KSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSE-DKVKQCVDPKLKGEYXXXXXXXXXXXXXLCVQYEAEFRPNMSIVVKALQPLL 683
            KSDVYSFGVV+LELLTGRKP D   P+ +QSLV WA P+L + D + + VDP L G Y             +CV  E   RP +S VV+AL+ L+
Sbjct:  593 KSDVYSFGVVMLELLTGRKPYDSGRPKAEQSLVRWAKPQLKDMDTLDEMVDPALCGLYAPESVSSFADIVSICVMTEPGLRPPVSNVVEALKRLV 687          
BLAST of DN621335 vs. ExPASy Swiss-Prot
Match: SRF3_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 3 OS=Arabidopsis thaliana GN=SRF3 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.082e-15
Identity = 46/96 (47.92%), Postives = 58/96 (60.42%), Query Frame = -2
Query:  399 KSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSE-DKVKQCVDPKLKGEYXXXXXXXXXXXXXLCVQYEAEFRPNMSIVVKALQPLLK 683
            +SDVYSFGVV+LELLTGR   D    RG+Q LV WA P+L + D + + VDP L G+Y              CVQ E EFRP MS VV+ L  +++
Sbjct:  669 QSDVYSFGVVMLELLTGRMSYDRDRSRGEQFLVRWAIPQLHDIDALGKMVDPSLNGQYPAKSLSHFADIISRCVQSEPEFRPLMSEVVQDLLDMIR 764          
The following BLAST results are available for this feature:
BLAST of DN621335 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
Y2197_ARATH1.112e-3675.00Probable protein kinase At2g41970 OS=Arabidopsis t... [more]
PTI1_SOLLC4.225e-3676.00Pto-interacting protein 1 OS=Solanum lycopersicum ... [more]
Y2706_ARATH1.359e-3476.04Probable receptor-like protein kinase At2g47060 OS... [more]
SRF7_ARATH1.613e-1957.29Protein STRUBBELIG-RECEPTOR FAMILY 7 OS=Arabidopsi... [more]
SRF6_ARATH1.613e-1956.25Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsi... [more]
SRF8_ARATH3.973e-1852.08Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsi... [more]
SRF5_ARATH4.393e-1754.95Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsi... [more]
SRF1_ARATH1.278e-1648.96Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsi... [more]
SRF4_ARATH8.284e-1649.47Protein STRUBBELIG-RECEPTOR FAMILY 4 OS=Arabidopsi... [more]
SRF3_ARATH1.082e-1547.92Protein STRUBBELIG-RECEPTOR FAMILY 3 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06J04_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006J04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621335 ID=DN621335; Name=DN621335; organism=Citrus sinensis; type=EST; length=684bp
TTTTTAATAAAATCAAATCAAATAAACAATATAAGTTGAGTCCAGAGAGA
AAAGAAATCAAACAAATACTCAGAACAAATATATCCACCACACAACCCAA
TCCAATTGTTAACTTAAAAACCCAAGGCCGACAGTACCATGGTGTCATAC
CAGTTGCAGACATTTTAAGTATCGACGACACTTCGGTACAAATCCAATCC
TAAAAATCTGCTCTCTTATACGAAATCAAATCTCATATACGAAAAATTAA
AAAAATATATATATATAAAAGTGATTTGCAGAAATATGGAGGCATATGAA
ACAAACTGTAACCAAGCTGCAAGAAACTTCAAGCTAGCAGCGGAACTAAA
TTCTTTTGCCTTTTAAGTCTCTGAAACTGGGGCTGCTGGAGGGGGAGATT
TCAGAAGAGGTTGAAGAGCCTTGACAACAATGCTCATATTTGGCCGGAAT
TCCGCTTCATACTGCACACATAATGCTGCTACTGCAGCCAACTTAGCAAC
TCCTTTGGGTGGATATTCACCCTTAAGCTTTGGGTCTACACATTGCTTAA
CTTTGTCTTCACTCAATCTTGGAGTAGCCCAGGTAACAAGACTCTGTTGT
CCACGAGGCATGGTGTGATCAACAGGTTTCCTCCCAGTAAGGAGCTCTAG
AAGGACAACCCCAAAGCTATACACGTCACTTTTC
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