DN621295

Overview
NameDN621295
Unique NameDN621295
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3519 contig Csv1_Contig3519:3..543. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DN621295 vs. ExPASy Swiss-Prot
Match: TO222_ARATH (Mitochondrial import receptor subunit TOM22 homolog 2 OS=Arabidopsis thaliana GN=TOM22-2 PE=1 SV=3)

HSP 1 Score: 105.145 bits (261), Expect = 2.159e-22
Identity = 54/81 (66.67%), Postives = 66/81 (81.48%), Query Frame = -2 
Query:  172 VTRRVSDTPIVAYTKQKASDAAYVSHKLLKSTGKAAWIAGTTFLILVVPLIIEMDREQQFNELEMQQQSLLGAPPLAPAQK 414
            +  R+S++ IV+  ++ A DA  VS KLL+STGKAAWIAGTTFLILVVPLIIEMDRE Q NE+E+QQ SLLGAPP +P Q+
Sbjct:   18 ILARISNSEIVSQGRRAAGDAVEVSKKLLRSTGKAAWIAGTTFLILVVPLIIEMDREAQINEIELQQASLLGAPP-SPMQR 97
[Close]
BLAST of DN621295 vs. ExPASy Swiss-Prot
Match: TO221_ARATH (Mitochondrial import receptor subunit TOM22 homolog 1 OS=Arabidopsis thaliana GN=TOM22-1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.490e-19
Identity = 47/91 (51.65%), Postives = 65/91 (71.43%), Query Frame = -2 
Query:  187 KRLTNNSGEVGFLAKVTRRVSDTPIVAYTKQKASDAAYVSHKLLKSTGKAAWIAGTTFLILVVPLIIEMDREQQFNELEMQQQSLLGAPPL 459
            K++    G+   LAK+    S+  IV+  ++ A DA YVS KLLKSTGKAAWIAGTTFLIL VPLI+E++++ +  E++ +Q SLLG PP+
Sbjct:    4 KKIGAGKGDSSILAKI----SNYDIVSQGRRAACDAVYVSKKLLKSTGKAAWIAGTTFLILAVPLILELEQDHRLGEIDFEQASLLGTPPV 90
The following BLAST results are available for this feature:
BLAST of DN621295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TO222_ARATH2.159e-2266.67Mitochondrial import receptor subunit TOM22 homolo... [more]
TO221_ARATH8.490e-1951.65Mitochondrial import receptor subunit TOM22 homolo... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_06I08_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006I08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621295 ID=DN621295; Name=DN621295; organism=Citrus sinensis; type=EST; length=541bp
TTTTTTTTTTTTTTTTTAAAGAAAGTTGACATTTTTATATCATAGATCCA
AAATTTATCCAACATTCTTAAAATATTTCCAAAACCCTAATACATAAAAA
TGATAGCACGTTAGCAAAACGCAACACCTCCTCAAACCTGACCCGAGCCG
GCCCGATTAAAGTTGAATTCACTTTTGAGCAGGCGCGAGCGGGGGAGCGC
CGAGGAGGCTCTGCTGCTGCATTTCGAGCTCGTTGAACTGCTGCTCGCGG
TCCATCTCGATGATTAGCGGGACCACCAGGATGAGGAAAGTGGTCCCCGC
GATCCACGCCGCTTTTCCCGTGCTTTTGAGGAGCTTATGGGAGACGTACG
CCGCGTCCGACGCCTTCTGTTTCGTGTAGGCGACAATCGGAGTATCCGAT
ACGCGACGGGTCACCTTAGCCAAGAAGCCAACCTCGCCGCTGTTGTTGGT
AAGTCGCTTTTTGCCTTGACCGGACGACATCGTATGGGCGGAGACGGTGG
AATAGGGAGCAATGTGAAAGAGAGAGAAAGGGCTTAGGCCT
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