DN621278

Overview
NameDN621278
Unique NameDN621278
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6036 contig Csv1_Contig6036:1..659. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN621278 vs. ExPASy Swiss-Prot
Match: C3H30_ARATH (Zinc finger CCCH domain-containing protein 30 OS=Arabidopsis thaliana GN=At2g41900 PE=1 SV=2)

HSP 1 Score: 203.756 bits (517), Expect = 1.234e-55
Identity = 104/145 (71.72%), Postives = 120/145 (82.76%), Query Frame = 2
Query:  164 MCCGPERLNHTLSPRSP-HISFDESRH--TNVDMNHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVV 589
            MCCG +RLN  +S RS   ISF+E  +  TN DMNHLTVET+D FASLLELAANNDVEG + SI  DPS VDE GLWYGRQKGSK MVN+ RTPLMVAATYGSID+I+LI+S + ADVN +CGND++TALHCAASGGA+NA+ VV
Sbjct:    1 MCCGSDRLNQIVSSRSSLPISFEEDNNLVTNTDMNHLTVETEDTFASLLELAANNDVEGVRLSIERDPSCVDEAGLWYGRQKGSKAMVNDYRTPLMVAATYGSIDVIKLIVSLTDADVNRACGNDQTTALHCAASGGAVNAIQVV 145          

HSP 2 Score: 34.6538 bits (78), Expect = 1.234e-55
Identity = 17/23 (73.91%), Postives = 19/23 (82.61%), Query Frame = 1
Query:  589 KLLLAAGADQNLVDAKGHRPVDV 657
            KLLLAAGAD NL+DA+G R  DV
Sbjct:  146 KLLLAAGADLNLLDAEGQRAGDV 168          
BLAST of DN621278 vs. ExPASy Swiss-Prot
Match: C3H56_ARATH (Zinc finger CCCH domain-containing protein 56 OS=Arabidopsis thaliana GN=At5g12850 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.472e-33
Identity = 62/106 (58.49%), Postives = 87/106 (82.08%), Query Frame = 2
Query:  272 ETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVV 589
            E + +F++LLE AA+NDVEGF+R +  D S ++++GLWY RQ+  ++MV EQRTPLMVA+ YGS+D+++ ILS   A++NLSCG DKSTALHCAASG ++N++DVV
Sbjct:   34 EWEHSFSALLEFAADNDVEGFRRQL-SDVSCINQMGLWYRRQRFVRRMVLEQRTPLMVASLYGSLDVVKFILSFPEAELNLSCGPDKSTALHCAASGASVNSLDVV 138          

HSP 2 Score: 35.8094 bits (81), Expect = 1.472e-33
Identity = 16/23 (69.57%), Postives = 19/23 (82.61%), Query Frame = 1
Query:  589 KLLLAAGADQNLVDAKGHRPVDV 657
            KLLL+ GAD N+ DA G+RPVDV
Sbjct:  139 KLLLSVGADPNIPDAHGNRPVDV 161          
BLAST of DN621278 vs. ExPASy Swiss-Prot
Match: C3H24_ORYSJ (Zinc finger CCCH domain-containing protein 24 OS=Oryza sativa subsp. japonica GN=Os03g0698800 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 9.346e-33
Identity = 65/110 (59.09%), Postives = 82/110 (74.55%), Query Frame = 2
Query:  263 LTVETDDAFASLLELAANNDVEGFKRSIV-CDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVV 589
            LTV+TDDAFA LLELAA++D EG +R++    P+  DE GLWYGR+K     V E RTPLMVAATYGS+ ++RL+LS    DVN  CG+D +TALHCAASGG+ + V+ V
Sbjct:   59 LTVDTDDAFAGLLELAADDDAEGLRRALERAPPAAADEAGLWYGRRK-----VLEHRTPLMVAATYGSLAVLRLLLSLPSVDVNRRCGSDGTTALHCAASGGSPSCVEAV 163          

HSP 2 Score: 35.4242 bits (80), Expect = 9.346e-33
Identity = 16/23 (69.57%), Postives = 18/23 (78.26%), Query Frame = 1
Query:  589 KLLLAAGADQNLVDAKGHRPVDV 657
            KLLLAAGAD +  DA G+RP DV
Sbjct:  164 KLLLAAGADADATDASGYRPADV 186          
BLAST of DN621278 vs. ExPASy Swiss-Prot
Match: C3H29_ARATH (Zinc finger CCCH domain-containing protein 29 OS=Arabidopsis thaliana GN=At2g40140 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.316e-23
Identity = 52/117 (44.44%), Postives = 76/117 (64.96%), Query Frame = 2
Query:  242 TNVDMNHLTVETDDAFASLLELAANNDVEGFKRSIVCDPS-GVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVV 589
            T V+      E   +   LLE AA +D+  FKR I  +PS  +DE G WY R+ GSK+M  E+RTPLMVAA YGS++++  I++   +DVN  C ++K TALHCA SG +++ V+++
Sbjct:   15 TEVEFMRQKSEDGASATCLLEFAACDDLSSFKREIEENPSVEIDESGFWYCRRVGSKKMGFEERTPLMVAAMYGSMEVLNYIIATGRSDVNRVCSDEKVTALHCAVSGCSVSIVEII 131          

HSP 2 Score: 30.0314 bits (66), Expect = 2.316e-23
Identity = 13/23 (56.52%), Postives = 17/23 (73.91%), Query Frame = 1
Query:  589 KLLLAAGADQNLVDAKGHRPVDV 657
            K+LL A A  N VDA G++PVD+
Sbjct:  132 KILLDASASPNCVDANGNKPVDL 154          
BLAST of DN621278 vs. ExPASy Swiss-Prot
Match: C3H47_ARATH (Zinc finger CCCH domain-containing protein 47 OS=Arabidopsis thaliana GN=At3g55980 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.463e-22
Identity = 49/99 (49.49%), Postives = 70/99 (70.71%), Query Frame = 2
Query:  296 LLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVN 592
            LLE AA +D++ FKR +      +DE GLWY R+ GSK+M  E+RTPLMVAA YGSI ++  I+S   +DVN +CG ++ T LHCA +G ++N ++V+N
Sbjct:   30 LLEFAACDDLDSFKREVEEKGLDLDESGLWYCRRVGSKKMGLEERTPLMVAAMYGSIKVLTFIVSTGKSDVNRACGEERVTPLHCAVAGCSVNMIEVIN 128          

HSP 2 Score: 25.0238 bits (53), Expect = 1.463e-22
Identity = 12/22 (54.55%), Postives = 16/22 (72.73%), Query Frame = 1
Query:  592 LLLAAGADQNLVDAKGHRPVDV 657
            +LL A A  N VDA G++P+DV
Sbjct:  129 VLLDASALVNSVDANGNQPLDV 150          
BLAST of DN621278 vs. ExPASy Swiss-Prot
Match: C3H66_ARATH (Zinc finger CCCH domain-containing protein 66 OS=Arabidopsis thaliana GN=At5g58620 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.357e-20
Identity = 50/102 (49.02%), Postives = 72/102 (70.59%), Query Frame = 2
Query:  287 FASLLELAANNDVEGFKRSIVCDP-SGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVV 589
            F+ LLE +A ND+ GFK  +  +    +D  GLWYGR+ GSK+M  E+RTPLM+AA +GS +++  I+S    DVN SCG+D +TALHCA SG + N++++V
Sbjct:   11 FSLLLESSACNDLSGFKSLVEEEGLESIDGSGLWYGRRLGSKKMGFEERTPLMIAALFGSKEVVDYIISTGLVDVNRSCGSDGATALHCAVSGLSANSLEIV 112          
BLAST of DN621278 vs. ExPASy Swiss-Prot
Match: C3H50_ORYSJ (Zinc finger CCCH domain-containing protein 50 OS=Oryza sativa subsp. japonica GN=Os07g0568300 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.039e-20
Identity = 55/108 (50.93%), Postives = 67/108 (62.04%), Query Frame = 2
Query:  281 DAFASLLELAANNDVEGFKRSIVCDPSGV----DEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGA-DVNLSCGNDKSTALHCAASGGALNAVDVV 589
            D  A+LLELAA +DV+G + ++           D VGLWYGR K       E RTPLMVAATYGS  ++ L++   G  DVN   G D +TALHCAASGG+ NAV VV
Sbjct:   22 DRLAALLELAAADDVDGLRGALAEGGEEAAELADGVGLWYGRSKAY-----EARTPLMVAATYGSAGVVSLLVGLGGCVDVNRRPGADGATALHCAASGGSRNAVAVV 124          

HSP 2 Score: 28.1054 bits (61), Expect = 8.039e-20
Identity = 14/23 (60.87%), Postives = 15/23 (65.22%), Query Frame = 1
Query:  589 KLLLAAGADQNLVDAKGHRPVDV 657
            KLLLAAGAD    D+ G  P DV
Sbjct:  125 KLLLAAGADPATPDSAGRFPADV 147          
BLAST of DN621278 vs. ExPASy Swiss-Prot
Match: C3H33_ORYSJ (Zinc finger CCCH domain-containing protein 33 OS=Oryza sativa subsp. japonica GN=Os05g0128200 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.111e-11
Identity = 46/140 (32.86%), Postives = 70/140 (50.00%), Query Frame = 2
Query:  164 MCCGPERLNHTLSPRSPHISFDESRHTNVDMNHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQ-KGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAV 580
            MC GP +      P +P +   +   T +           A + LLELAA +DV   +R +  +   +   GLWYG    G  ++  E+RT  MVAA YGS  ++  +++ + A+   +   D +T LH AA+GGA NAV
Sbjct:    1 MCSGPRK------PSTPPLPQQQKEATVM-----------AASLLLELAAADDVAAVRRVVEEEKVSLGVAGLWYGPSASGVARLGMERRTAAMVAALYGSTGVLGYVVAAAPAEAARASETDGATPLHMAAAGGAANAV 123          

HSP 2 Score: 22.3274 bits (46), Expect = 2.111e-11
Identity = 11/23 (47.83%), Postives = 15/23 (65.22%), Query Frame = 1
Query:  589 KLLLAAGADQNLVDAKGHRPVDV 657
            +LLLAAGA  + + A G R  D+
Sbjct:  127 RLLLAAGASVDALSASGLRAGDL 149          
The following BLAST results are available for this feature:
BLAST of DN621278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
C3H30_ARATH1.234e-5571.72Zinc finger CCCH domain-containing protein 30 OS=A... [more]
C3H56_ARATH1.472e-3358.49Zinc finger CCCH domain-containing protein 56 OS=A... [more]
C3H24_ORYSJ9.346e-3359.09Zinc finger CCCH domain-containing protein 24 OS=O... [more]
C3H29_ARATH2.316e-2344.44Zinc finger CCCH domain-containing protein 29 OS=A... [more]
C3H47_ARATH1.463e-2249.49Zinc finger CCCH domain-containing protein 47 OS=A... [more]
C3H66_ARATH1.357e-2049.02Zinc finger CCCH domain-containing protein 66 OS=A... [more]
C3H50_ORYSJ8.039e-2050.93Zinc finger CCCH domain-containing protein 50 OS=O... [more]
C3H33_ORYSJ2.111e-1132.86Zinc finger CCCH domain-containing protein 33 OS=O... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_06H23_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006H23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621278 ID=DN621278; Name=DN621278; organism=Citrus sinensis; type=EST; length=658bp
AGAAGAAGCTCCTCACTTCACTTCTCTTCTCCATTACTTTGTCTTCTCAA
TCTCATCATCAACTTTCTCTCTTTCAAACTTTAATCACTCCTCTAACTAG
ATCTATAACTGTGAGATACTACTCTCTTTTGTTAGCTGCTAATTATTTTT
TGCAAATGAAAGCATGTGCTGTGGACCGGAGCGGTTAAATCATACGCTGT
CTCCAAGATCACCTCATATTTCTTTTGACGAAAGTAGACACACCAACGTA
GATATGAATCACTTGACTGTTGAGACTGATGATGCTTTTGCAAGCTTGCT
TGAGCTTGCTGCTAACAACGATGTTGAGGGCTTCAAACGATCAATTGTGT
GCGACCCATCAGGTGTTGATGAGGTTGGATTGTGGTATGGTCGGCAGAAG
GGCTCAAAGCAGATGGTTAATGAACAGAGAACCCCGTTAATGGTTGCTGC
TACATATGGTAGTATTGATATCATAAGACTGATTCTTTCTGAATCAGGTG
CTGATGTGAATCTGTCCTGTGGCAATGACAAAAGCACTGCCCTTCATTGT
GCTGCCTCTGGTGGGGCTTTGAATGCTGTTGATGTTGTAAACTGCTTCTA
GCTGCGGGTGCGGATCAAAATTTGGTAGATGCAAAAGGTCATCGTCCTGT
TGATGTTA
back to top