DN621278
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DN621278 vs. ExPASy Swiss-Prot
Match: C3H30_ARATH (Zinc finger CCCH domain-containing protein 30 OS=Arabidopsis thaliana GN=At2g41900 PE=1 SV=2) HSP 1 Score: 203.756 bits (517), Expect = 1.234e-55 Identity = 104/145 (71.72%), Postives = 120/145 (82.76%), Query Frame = 2 Query: 164 MCCGPERLNHTLSPRSP-HISFDESRH--TNVDMNHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVV 589 MCCG +RLN +S RS ISF+E + TN DMNHLTVET+D FASLLELAANNDVEG + SI DPS VDE GLWYGRQKGSK MVN+ RTPLMVAATYGSID+I+LI+S + ADVN +CGND++TALHCAASGGA+NA+ VV Sbjct: 1 MCCGSDRLNQIVSSRSSLPISFEEDNNLVTNTDMNHLTVETEDTFASLLELAANNDVEGVRLSIERDPSCVDEAGLWYGRQKGSKAMVNDYRTPLMVAATYGSIDVIKLIVSLTDADVNRACGNDQTTALHCAASGGAVNAIQVV 145 HSP 2 Score: 34.6538 bits (78), Expect = 1.234e-55 Identity = 17/23 (73.91%), Postives = 19/23 (82.61%), Query Frame = 1 Query: 589 KLLLAAGADQNLVDAKGHRPVDV 657 KLLLAAGAD NL+DA+G R DV Sbjct: 146 KLLLAAGADLNLLDAEGQRAGDV 168
BLAST of DN621278 vs. ExPASy Swiss-Prot
Match: C3H56_ARATH (Zinc finger CCCH domain-containing protein 56 OS=Arabidopsis thaliana GN=At5g12850 PE=2 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 1.472e-33 Identity = 62/106 (58.49%), Postives = 87/106 (82.08%), Query Frame = 2 Query: 272 ETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVV 589 E + +F++LLE AA+NDVEGF+R + D S ++++GLWY RQ+ ++MV EQRTPLMVA+ YGS+D+++ ILS A++NLSCG DKSTALHCAASG ++N++DVV Sbjct: 34 EWEHSFSALLEFAADNDVEGFRRQL-SDVSCINQMGLWYRRQRFVRRMVLEQRTPLMVASLYGSLDVVKFILSFPEAELNLSCGPDKSTALHCAASGASVNSLDVV 138 HSP 2 Score: 35.8094 bits (81), Expect = 1.472e-33 Identity = 16/23 (69.57%), Postives = 19/23 (82.61%), Query Frame = 1 Query: 589 KLLLAAGADQNLVDAKGHRPVDV 657 KLLL+ GAD N+ DA G+RPVDV Sbjct: 139 KLLLSVGADPNIPDAHGNRPVDV 161
BLAST of DN621278 vs. ExPASy Swiss-Prot
Match: C3H24_ORYSJ (Zinc finger CCCH domain-containing protein 24 OS=Oryza sativa subsp. japonica GN=Os03g0698800 PE=2 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 9.346e-33 Identity = 65/110 (59.09%), Postives = 82/110 (74.55%), Query Frame = 2 Query: 263 LTVETDDAFASLLELAANNDVEGFKRSIV-CDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVV 589 LTV+TDDAFA LLELAA++D EG +R++ P+ DE GLWYGR+K V E RTPLMVAATYGS+ ++RL+LS DVN CG+D +TALHCAASGG+ + V+ V Sbjct: 59 LTVDTDDAFAGLLELAADDDAEGLRRALERAPPAAADEAGLWYGRRK-----VLEHRTPLMVAATYGSLAVLRLLLSLPSVDVNRRCGSDGTTALHCAASGGSPSCVEAV 163 HSP 2 Score: 35.4242 bits (80), Expect = 9.346e-33 Identity = 16/23 (69.57%), Postives = 18/23 (78.26%), Query Frame = 1 Query: 589 KLLLAAGADQNLVDAKGHRPVDV 657 KLLLAAGAD + DA G+RP DV Sbjct: 164 KLLLAAGADADATDASGYRPADV 186
BLAST of DN621278 vs. ExPASy Swiss-Prot
Match: C3H29_ARATH (Zinc finger CCCH domain-containing protein 29 OS=Arabidopsis thaliana GN=At2g40140 PE=2 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 2.316e-23 Identity = 52/117 (44.44%), Postives = 76/117 (64.96%), Query Frame = 2 Query: 242 TNVDMNHLTVETDDAFASLLELAANNDVEGFKRSIVCDPS-GVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVV 589 T V+ E + LLE AA +D+ FKR I +PS +DE G WY R+ GSK+M E+RTPLMVAA YGS++++ I++ +DVN C ++K TALHCA SG +++ V+++ Sbjct: 15 TEVEFMRQKSEDGASATCLLEFAACDDLSSFKREIEENPSVEIDESGFWYCRRVGSKKMGFEERTPLMVAAMYGSMEVLNYIIATGRSDVNRVCSDEKVTALHCAVSGCSVSIVEII 131 HSP 2 Score: 30.0314 bits (66), Expect = 2.316e-23 Identity = 13/23 (56.52%), Postives = 17/23 (73.91%), Query Frame = 1 Query: 589 KLLLAAGADQNLVDAKGHRPVDV 657 K+LL A A N VDA G++PVD+ Sbjct: 132 KILLDASASPNCVDANGNKPVDL 154
BLAST of DN621278 vs. ExPASy Swiss-Prot
Match: C3H47_ARATH (Zinc finger CCCH domain-containing protein 47 OS=Arabidopsis thaliana GN=At3g55980 PE=2 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 1.463e-22 Identity = 49/99 (49.49%), Postives = 70/99 (70.71%), Query Frame = 2 Query: 296 LLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVN 592 LLE AA +D++ FKR + +DE GLWY R+ GSK+M E+RTPLMVAA YGSI ++ I+S +DVN +CG ++ T LHCA +G ++N ++V+N Sbjct: 30 LLEFAACDDLDSFKREVEEKGLDLDESGLWYCRRVGSKKMGLEERTPLMVAAMYGSIKVLTFIVSTGKSDVNRACGEERVTPLHCAVAGCSVNMIEVIN 128 HSP 2 Score: 25.0238 bits (53), Expect = 1.463e-22 Identity = 12/22 (54.55%), Postives = 16/22 (72.73%), Query Frame = 1 Query: 592 LLLAAGADQNLVDAKGHRPVDV 657 +LL A A N VDA G++P+DV Sbjct: 129 VLLDASALVNSVDANGNQPLDV 150
BLAST of DN621278 vs. ExPASy Swiss-Prot
Match: C3H66_ARATH (Zinc finger CCCH domain-containing protein 66 OS=Arabidopsis thaliana GN=At5g58620 PE=2 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.357e-20 Identity = 50/102 (49.02%), Postives = 72/102 (70.59%), Query Frame = 2 Query: 287 FASLLELAANNDVEGFKRSIVCDP-SGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVV 589 F+ LLE +A ND+ GFK + + +D GLWYGR+ GSK+M E+RTPLM+AA +GS +++ I+S DVN SCG+D +TALHCA SG + N++++V Sbjct: 11 FSLLLESSACNDLSGFKSLVEEEGLESIDGSGLWYGRRLGSKKMGFEERTPLMIAALFGSKEVVDYIISTGLVDVNRSCGSDGATALHCAVSGLSANSLEIV 112
BLAST of DN621278 vs. ExPASy Swiss-Prot
Match: C3H50_ORYSJ (Zinc finger CCCH domain-containing protein 50 OS=Oryza sativa subsp. japonica GN=Os07g0568300 PE=2 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 8.039e-20 Identity = 55/108 (50.93%), Postives = 67/108 (62.04%), Query Frame = 2 Query: 281 DAFASLLELAANNDVEGFKRSIVCDPSGV----DEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGA-DVNLSCGNDKSTALHCAASGGALNAVDVV 589 D A+LLELAA +DV+G + ++ D VGLWYGR K E RTPLMVAATYGS ++ L++ G DVN G D +TALHCAASGG+ NAV VV Sbjct: 22 DRLAALLELAAADDVDGLRGALAEGGEEAAELADGVGLWYGRSKAY-----EARTPLMVAATYGSAGVVSLLVGLGGCVDVNRRPGADGATALHCAASGGSRNAVAVV 124 HSP 2 Score: 28.1054 bits (61), Expect = 8.039e-20 Identity = 14/23 (60.87%), Postives = 15/23 (65.22%), Query Frame = 1 Query: 589 KLLLAAGADQNLVDAKGHRPVDV 657 KLLLAAGAD D+ G P DV Sbjct: 125 KLLLAAGADPATPDSAGRFPADV 147
BLAST of DN621278 vs. ExPASy Swiss-Prot
Match: C3H33_ORYSJ (Zinc finger CCCH domain-containing protein 33 OS=Oryza sativa subsp. japonica GN=Os05g0128200 PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 2.111e-11 Identity = 46/140 (32.86%), Postives = 70/140 (50.00%), Query Frame = 2 Query: 164 MCCGPERLNHTLSPRSPHISFDESRHTNVDMNHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQ-KGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAV 580 MC GP + P +P + + T + A + LLELAA +DV +R + + + GLWYG G ++ E+RT MVAA YGS ++ +++ + A+ + D +T LH AA+GGA NAV Sbjct: 1 MCSGPRK------PSTPPLPQQQKEATVM-----------AASLLLELAAADDVAAVRRVVEEEKVSLGVAGLWYGPSASGVARLGMERRTAAMVAALYGSTGVLGYVVAAAPAEAARASETDGATPLHMAAAGGAANAV 123 HSP 2 Score: 22.3274 bits (46), Expect = 2.111e-11 Identity = 11/23 (47.83%), Postives = 15/23 (65.22%), Query Frame = 1 Query: 589 KLLLAAGADQNLVDAKGHRPVDV 657 +LLLAAGA + + A G R D+ Sbjct: 127 RLLLAAGASVDALSASGLRAGDL 149 The following BLAST results are available for this feature:
BLAST of DN621278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >DN621278 ID=DN621278; Name=DN621278; organism=Citrus sinensis; type=EST; length=658bpback to top |