DN621263

Overview
NameDN621263
Unique NameDN621263
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2291 contig Csv1_Contig2291:15..739. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN621263 vs. ExPASy Swiss-Prot
Match: EXPA8_ARATH (Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 4.498e-63
Identity = 109/127 (85.83%), Postives = 119/127 (93.70%), Query Frame = -3
Query:  346 DNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKT-GWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 723
            DNGGWCNPPLQHFD+AEPAFLQIAQYRAGIVP+SFRR+PC KKGGIRFT+NGHSYFNLVLI+NVGGAGDVH+VSIKGSKT  WQAMSRNWGQNWQSNSY+N QSLSFQ+T SDGRT+ SN+V P NW
Sbjct:  116 DNGGWCNPPLQHFDLAEPAFLQIAQYRAGIVPVSFRRVPCMKKGGIRFTINGHSYFNLVLISNVGGAGDVHAVSIKGSKTQSWQAMSRNWGQNWQSNSYMNDQSLSFQVTTSDGRTLVSNDVAPSNW 242          
BLAST of DN621263 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSJ (Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 7.181e-61
Identity = 105/126 (83.33%), Postives = 115/126 (91.27%), Query Frame = -3
Query:  346 DNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 723
            D+GGWCNPP  HFDMAEPAFL IAQYRAGIVP+SFRR+PC KKGG+RFTVNGHSYFNLVL+TNV GAGDV SVSIKGS+TGWQ MSRNWGQNWQSN++L+GQSLSFQ+TASDGRTVTSNNV    W
Sbjct:  110 DDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSFRRVPCVKKGGVRFTVNGHSYFNLVLVTNVAGAGDVRSVSIKGSRTGWQPMSRNWGQNWQSNAFLDGQSLSFQVTASDGRTVTSNNVAHPGW 235          
BLAST of DN621263 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSI (Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 7.181e-61
Identity = 105/126 (83.33%), Postives = 115/126 (91.27%), Query Frame = -3
Query:  346 DNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 723
            D+GGWCNPP  HFDMAEPAFL IAQYRAGIVP+SFRR+PC KKGG+RFTVNGHSYFNLVL+TNV GAGDV SVSIKGS+TGWQ MSRNWGQNWQSN++L+GQSLSFQ+TASDGRTVTSNNV    W
Sbjct:  110 DDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSFRRVPCVKKGGVRFTVNGHSYFNLVLVTNVAGAGDVRSVSIKGSRTGWQPMSRNWGQNWQSNAFLDGQSLSFQVTASDGRTVTSNNVAHPGW 235          
BLAST of DN621263 vs. ExPASy Swiss-Prot
Match: EXPA2_ORYSJ (Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 232.646 bits (592), Expect = 1.600e-60
Identity = 104/126 (82.54%), Postives = 112/126 (88.89%), Query Frame = -3
Query:  346 DNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 723
            D+GGWCNPP  HFDMAEPAFLQI  YRAGIVP+S+RR+PC KKGGIRFT+NGHSYFNLVL+TNV G GDV SVSIKGS TGWQ MSRNWGQNWQSNSYL+GQSLSFQ+  SDGRTVTSNNVVP  W
Sbjct:  115 DDGGWCNPPRPHFDMAEPAFLQIGVYRAGIVPVSYRRVPCVKKGGIRFTINGHSYFNLVLVTNVAGPGDVQSVSIKGSSTGWQPMSRNWGQNWQSNSYLDGQSLSFQVAVSDGRTVTSNNVVPAGW 240          
BLAST of DN621263 vs. ExPASy Swiss-Prot
Match: EXP10_ARATH (Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 8.779e-59
Identity = 98/126 (77.78%), Postives = 114/126 (90.48%), Query Frame = -3
Query:  346 DNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 723
            +NGGWCNPPL+HFD+A+P F +IAQYRAGIVP+S+RR+PC ++GGIRFT+NGHSYFNLVLITNVGGAGDVHS +IKGS+T WQAMSRNWGQNWQSNSYLNGQ+LSF++T SDGRTV S N  P  W
Sbjct:  112 NNGGWCNPPLEHFDLAQPVFQRIAQYRAGIVPVSYRRVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHSAAIKGSRTVWQAMSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVVSFNAAPAGW 237          
BLAST of DN621263 vs. ExPASy Swiss-Prot
Match: EXPA1_ARATH (Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 5.690e-58
Identity = 95/124 (76.61%), Postives = 112/124 (90.32%), Query Frame = -3
Query:  346 GGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 717
            GGWCNPP QHFD+++P F +IAQYRAGIVP+++RR+PC ++GGIRFT+NGHSYFNLVLITNVGGAGDVHS  +KGS+TGWQAMSRNWGQNWQSNSYLNGQSLSF++T SDG+T+ SNNV    W
Sbjct:  115 GGWCNPPQQHFDLSQPVFQRIAQYRAGIVPVAYRRVPCVRRGGIRFTINGHSYFNLVLITNVGGAGDVHSAMVKGSRTGWQAMSRNWGQNWQSNSYLNGQSLSFKVTTSDGQTIVSNNVANAGW 238          
BLAST of DN621263 vs. ExPASy Swiss-Prot
Match: EXP15_ARATH (Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 2.162e-57
Identity = 92/124 (74.19%), Postives = 114/124 (91.94%), Query Frame = -3
Query:  346 GGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 717
            GGWCNPPL HFD+++P F +IAQY+AG+VP+S+RR+PC ++GGIRFT+NGHSYFNLVL+TNVGGAGDVHSV++KGS+T WQ MSRNWGQNWQSN+ LNGQ+LSF++TASDGRTV SNN+ P +W
Sbjct:  118 GGWCNPPLHHFDLSQPVFQRIAQYKAGVVPVSYRRVPCMRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAVKGSRTRWQQMSRNWGQNWQSNNLLNGQALSFKVTASDGRTVVSNNIAPASW 241          
BLAST of DN621263 vs. ExPASy Swiss-Prot
Match: EXPA2_ARATH (Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 221.09 bits (562), Expect = 4.817e-57
Identity = 100/127 (78.74%), Postives = 116/127 (91.34%), Query Frame = -3
Query:  346 DNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTG-WQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 723
            DNGGWCNPPL+HFD+AEPAFLQIAQYRAGIVP++FRR+PC K GGIRFT+NG+ YF+LVLITNVGGAGD+ +VS+KGSKT  WQ+MSRNWGQNWQSN+YL GQSLSFQ+T SDGRTV S +VVP +W
Sbjct:  118 DNGGWCNPPLKHFDLAEPAFLQIAQYRAGIVPVAFRRVPCEKGGGIRFTINGNPYFDLVLITNVGGAGDIRAVSLKGSKTDQWQSMSRNWGQNWQSNTYLRGQSLSFQVTDSDGRTVVSYDVVPHDW 244          
BLAST of DN621263 vs. ExPASy Swiss-Prot
Match: EXPA4_ARATH (Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 8.503e-54
Identity = 91/126 (72.22%), Postives = 109/126 (86.51%), Query Frame = -3
Query:  346 DNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 723
            DNGGWCNPP +HFD+A P FL+IAQYRAGIVP+S+RR+PC K+GGIRFT+NGH YFNLVLITNV GAGD+   S+KGS+TGW ++SRNWGQNWQSN+ L GQ+LSF++T SD RT TS N+VP NW
Sbjct:  119 DNGGWCNPPREHFDLAMPVFLKIAQYRAGIVPVSYRRVPCRKRGGIRFTINGHRYFNLVLITNVAGAGDIVRASVKGSRTGWMSLSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNMVPSNW 244          
BLAST of DN621263 vs. ExPASy Swiss-Prot
Match: EXP14_ARATH (Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.450e-53
Identity = 91/124 (73.39%), Postives = 108/124 (87.10%), Query Frame = -3
Query:  346 GGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 717
            GGWCNPP  HFD+A+P FL+IAQY+AG+VP+ +RR+ C +KGGIRFT+NGHSYFNLVLITNV GAGDV SVSIKG+ T WQ+MSRNWGQNWQSN+ L+GQ+LSF++T SDGRTV SNN  P NW
Sbjct:  117 GGWCNPPQHHFDLAQPIFLRIAQYKAGVVPVQYRRVACRRKGGIRFTINGHSYFNLVLITNVAGAGDVISVSIKGTNTRWQSMSRNWGQNWQSNAKLDGQALSFKVTTSDGRTVISNNATPRNW 240          
The following BLAST results are available for this feature:
BLAST of DN621263 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
EXPA8_ARATH4.498e-6385.83Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 ... [more]
EXPA4_ORYSJ7.181e-6183.33Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA4_ORYSI7.181e-6183.33Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4... [more]
EXPA2_ORYSJ1.600e-6082.54Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP10_ARATH8.779e-5977.78Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=... [more]
EXPA1_ARATH5.690e-5876.61Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 ... [more]
EXP15_ARATH2.162e-5774.19Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=... [more]
EXPA2_ARATH4.817e-5778.74Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 ... [more]
EXPA4_ARATH8.503e-5472.22Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 ... [more]
EXP14_ARATH1.450e-5373.39Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06H15_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006H15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621263 ID=DN621263; Name=DN621263; organism=Citrus sinensis; type=EST; length=725bp
TTTTTTTTTACACATTAAGATTGAAATTTTTTTTATCAATAAACTTTTAA
CTGATGTCTCAAATGATAACCAGAAATCACAACGCTGAATGAAATTATAC
CCGTTCATTCAATTGAAGTAATAACTATATATAGAACACAATCATTTCTA
TTTATAGAGGCCTAGCGGGTGCCAACAGACCACCACAGCAACAAGACAGG
CCACATCGGCCAGGCCTGAGCCTCACCTACCCCTATTCTCACCCTTCCTC
CCTCACAAACAGTGCCAAATTCAATTAAATATACAAATTCTGATTCACTT
TTTTAAAATCTAAAACTGACCACCCTCAAAGGTTTGCCCAAATTGCCAAT
TTCCAGGCACAACATTGTTGCTAGTCACAGTCCTGCCGTCACTGGCTGTC
AATTGGAAAGAAAGACTTTGGCCGTTAAGATAAGAATTGCTCTGCCAATT
TTGGCCCCAGTTCCTTGACATTGCTTGCCATCCAGTCTTTGAACCCTTGA
TTGATACTGAATGTACATCTCCTGCTCCTCCGACATTTGTGATCAAAACC
AGGTTGAAGTATGAGTGTCCATTGACGGTAAACCTTATTCCTCCTTTCTT
CGCACACGGGATCCTTCTGAAGGAAATTGGGACGATACCGGCGCGGTATT
GGGCAATTTGCAAGAAAGCGGGCTCAGCCATGTCAAAGTGCTGGAGGGGA
GGATTGCACCAACCGCCGTTGTCGT
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