DN621259

Overview
NameDN621259
Unique NameDN621259
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length723
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1939 contig Csv1_Contig1939:256..978. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN621259 vs. ExPASy Swiss-Prot
Match: PSB3A_ARATH (Proteasome subunit beta type-3-A OS=Arabidopsis thaliana GN=PBC1 PE=1 SV=2)

HSP 1 Score: 301.982 bits (772), Expect = 2.130e-81
Identity = 146/158 (92.41%), Postives = 153/158 (96.84%), Query Frame = -3
Query:  248 DRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 721
            DR+FIGLSGLATD QTLYQRLVFRHKLYQLREERDMKPETFASLVSA+LYEKRFGPY CQPVIAGL D+DKPFICTMDSIGAKELAKDFVV+GTA ESLYGACEAM+KPDME +ELFET+SQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD
Sbjct:   47 DRVFIGLSGLATDVQTLYQRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPYLCQPVIAGLGDDDKPFICTMDSIGAKELAKDFVVSGTASESLYGACEAMYKPDMEAEELFETISQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 204          
BLAST of DN621259 vs. ExPASy Swiss-Prot
Match: PSB3B_ARATH (Proteasome subunit beta type-3-B OS=Arabidopsis thaliana GN=PBC2 PE=1 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 1.527e-79
Identity = 142/158 (89.87%), Postives = 151/158 (95.57%), Query Frame = -3
Query:  248 DRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 721
            D LFIGLSGLATD QTLYQRLVFRHKLYQLREERDMKPETFASLVSA+LYEKRFGP+ CQPVIAGL D++KPFICTMDSIGAKELAKDFVV+GTA ESLYGACEAMFKPDME +ELFET+SQALLSSVDRDCLSGWGGHVY+VTP E+KERILKGRMD
Sbjct:   47 DHLFIGLSGLATDVQTLYQRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPFLCQPVIAGLGDDNKPFICTMDSIGAKELAKDFVVSGTASESLYGACEAMFKPDMEAEELFETISQALLSSVDRDCLSGWGGHVYVVTPKEVKERILKGRMD 204          
BLAST of DN621259 vs. ExPASy Swiss-Prot
Match: PSB3_PICMA (Proteasome subunit beta type-3 OS=Picea mariana GN=PBC1 PE=2 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 3.183e-77
Identity = 134/158 (84.81%), Postives = 150/158 (94.94%), Query Frame = -3
Query:  248 DRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 721
            D+L++GLSGLATD QTLYQR  FRHKLYQLREER+M+PETFASLVSALLYEKRFGPYFCQPVIAGL ++DKPFICTMDSIGAKELAKDFVVAGTA ESLYGACE+M+KPDMEP+ELFET+SQALLSS+DRDCLSGWGGHVY+V+P ++ ER LKGRMD
Sbjct:   47 DKLYVGLSGLATDVQTLYQRFAFRHKLYQLREERNMRPETFASLVSALLYEKRFGPYFCQPVIAGLGEDDKPFICTMDSIGAKELAKDFVVAGTAAESLYGACESMYKPDMEPEELFETISQALLSSIDRDCLSGWGGHVYVVSPNQVIERTLKGRMD 204          
BLAST of DN621259 vs. ExPASy Swiss-Prot
Match: PSB3_ORYSJ (Proteasome subunit beta type-3 OS=Oryza sativa subsp. japonica GN=PBC1 PE=2 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 1.337e-75
Identity = 133/158 (84.18%), Postives = 151/158 (95.57%), Query Frame = -3
Query:  248 DRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 721
            D+L+IGLSGLATD+QTLYQRLVFRHKLYQLREERDMKP+TFASLVSALLYEKRFGPYFCQPVIAGL ++++PFICTMD IGAKELAKDFVV+GTA ESLYGACE+M+KP+MEP+ELFET+SQAL SSVDRDCLSGWGG V +VTPTE+KE ++KGRMD
Sbjct:   47 DKLYIGLSGLATDAQTLYQRLVFRHKLYQLREERDMKPQTFASLVSALLYEKRFGPYFCQPVIAGLGEDNEPFICTMDCIGAKELAKDFVVSGTASESLYGACESMYKPNMEPEELFETISQALQSSVDRDCLSGWGGFVLLVTPTEVKECVIKGRMD 204          
BLAST of DN621259 vs. ExPASy Swiss-Prot
Match: PSB3_SCHPO (Probable proteasome subunit beta type-3 OS=Schizosaccharomyces pombe GN=SPCC63.12c PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.347e-51
Identity = 90/158 (56.96%), Postives = 129/158 (81.65%), Query Frame = -3
Query:  248 DRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 721
            D+ ++GL+GLATD QTLY+   ++  LY+ REER ++P+TFA+LVS+ LYEKRFGPYF  PV+AG+S+++ PFIC  DSIG  + A+DF+V+GTA E LYG CE++++P++EPD+LFET+SQALL++ DRDC+SGWG  VY++T  +  +R++KGR D
Sbjct:   47 DKTYLGLTGLATDVQTLYELFRYKVNLYKFREERQIQPKTFANLVSSTLYEKRFGPYFSFPVVAGVSNDNTPFICGFDSIGCIDFAEDFIVSGTATEQLYGMCESVYEPNLEPDDLFETISQALLNAQDRDCISGWGCVVYVITADKCIKRLVKGRQD 204          
BLAST of DN621259 vs. ExPASy Swiss-Prot
Match: PSB3_DICDI (Proteasome subunit beta type-3 OS=Dictyostelium discoideum GN=psmB3 PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.067e-48
Identity = 89/159 (55.97%), Postives = 118/159 (74.21%), Query Frame = -3
Query:  248 DRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDK-PFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 721
            D+ F+G+SGL TD+QTLYQ+LVFRH LY+LREERDM P   ++L++ +LYEKRFGPYF +P+I GL   D  PFI  MD IGA     DF+V GT   ++YG CE ++K DM  D+LFET+SQ +L+S+DRD LSGWG  V+++TPT++  + L GR D
Sbjct:   47 DKCFVGISGLVTDAQTLYQKLVFRHNLYKLREERDMSPRVVSNLLTNMLYEKRFGPYFTEPLICGLEGPDNTPFISGMDLIGASVATDDFLVVGTMTPAMYGVCETLYKKDMNEDDLFETISQCMLASLDRDALSGWGAIVHVITPTQVITKKLLGRQD 205          
BLAST of DN621259 vs. ExPASy Swiss-Prot
Match: PSB3_ONCMY (Proteasome subunit beta type-3 OS=Oncorhynchus mykiss GN=psmb3 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.180e-47
Identity = 91/159 (57.23%), Postives = 124/159 (77.99%), Query Frame = -3
Query:  248 DRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDED-KPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 721
            DRL+IGL+GLATD QT+ QRL FR  LY+L+E R +KP+TF S+VS LLYE+RFGPY+ +PVIAGL  +  +PFIC++D IG   + +DFVV+GT  E +YG CE++++PDMEP++LFET+SQA+L++VDRD +SG G  V ++   +I  R LK RMD
Sbjct:   47 DRLYIGLAGLATDVQTVSQRLKFRLNLYELKEGRQIKPKTFMSMVSNLLYERRFGPYYIEPVIAGLDPKTFEPFICSLDLIGCPMVTEDFVVSGTCSEQMYGMCESLWEPDMEPEDLFETISQAMLNAVDRDAVSGMGVVVQVIEKDKITTRTLKARMD 205          
BLAST of DN621259 vs. ExPASy Swiss-Prot
Match: PSB3_HUMAN (Proteasome subunit beta type-3 OS=Homo sapiens GN=PSMB3 PE=1 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 1.304e-46
Identity = 91/159 (57.23%), Postives = 121/159 (76.10%), Query Frame = -3
Query:  248 DRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDED-KPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 721
            DRL+IGL+GLATD QT+ QRL FR  LY+L+E R +KP T  S+V+ LLYEKRFGPY+ +PVIAGL  +  KPFIC++D IG   +  DFVV+GT  E +YG CE++++P+M+PD LFET+SQA+L++VDRD +SG G  V+I+   +I  R LK RMD
Sbjct:   47 DRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDKITTRTLKARMD 205          
BLAST of DN621259 vs. ExPASy Swiss-Prot
Match: PSB3_RAT (Proteasome subunit beta type-3 OS=Rattus norvegicus GN=Psmb3 PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.795e-46
Identity = 90/159 (56.60%), Postives = 121/159 (76.10%), Query Frame = -3
Query:  248 DRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDED-KPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 721
            DRL+IGL+GLATD QT+ QRL FR  LY+L+E R +KP T  S+V+ LLYEKRFGPY+ +PVIAGL  +  KPFIC++D IG   +  DFVV+GT  E +YG CE++++P+M+P+ LFET+SQA+L++VDRD +SG G  V+I+   +I  R LK RMD
Sbjct:   47 DRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDKITTRTLKARMD 205          
BLAST of DN621259 vs. ExPASy Swiss-Prot
Match: PSB3_MOUSE (Proteasome subunit beta type-3 OS=Mus musculus GN=Psmb3 PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.957e-46
Identity = 89/159 (55.97%), Postives = 121/159 (76.10%), Query Frame = -3
Query:  248 DRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDED-KPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 721
            DRL+IGL+GLATD QT+ QRL FR  LY+L+E R +KP T  S+V+ LLYEKRFGPY+ +PVIAGL  +  KPFIC++D IG   +  DFVV+GT  E +YG CE++++P+M+P+ LFET+SQA+L++VDRD +SG G  V+++   +I  R LK RMD
Sbjct:   47 DRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAVSGMGVIVHVIEKDKITTRTLKARMD 205          
The following BLAST results are available for this feature:
BLAST of DN621259 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
PSB3A_ARATH2.130e-8192.41Proteasome subunit beta type-3-A OS=Arabidopsis th... [more]
PSB3B_ARATH1.527e-7989.87Proteasome subunit beta type-3-B OS=Arabidopsis th... [more]
PSB3_PICMA3.183e-7784.81Proteasome subunit beta type-3 OS=Picea mariana GN... [more]
PSB3_ORYSJ1.337e-7584.18Proteasome subunit beta type-3 OS=Oryza sativa sub... [more]
PSB3_SCHPO1.347e-5156.96Probable proteasome subunit beta type-3 OS=Schizos... [more]
PSB3_DICDI1.067e-4855.97Proteasome subunit beta type-3 OS=Dictyostelium di... [more]
PSB3_ONCMY1.180e-4757.23Proteasome subunit beta type-3 OS=Oncorhynchus myk... [more]
PSB3_HUMAN1.304e-4657.23Proteasome subunit beta type-3 OS=Homo sapiens GN=... [more]
PSB3_RAT3.795e-4656.60Proteasome subunit beta type-3 OS=Rattus norvegicu... [more]
PSB3_MOUSE4.957e-4655.97Proteasome subunit beta type-3 OS=Mus musculus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06H13_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006H13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621259 ID=DN621259; Name=DN621259; organism=Citrus sinensis; type=EST; length=723bp
CCCTTTTTTTTTTAAGATCAAAACCTCAATTGATAGAAACGCTTTCATCC
ATCCAGATAACCGCAAGCCCACGAACTTGGTCAATTCAGTTTGAAACTAT
TTCAGAGTACAACAATTTGAGAGCTATTAAACAACATTCTTCATAAACAA
ATGAAAGTCAAGTTCAAGTCTACGGTCTTCTAATTGAAAAATACTGGAGA
GCGAACACAAGAGAAGGGGTGGCTTTCAGCACTGCAGTTATAGATCAATC
CATCCTTCCCTTCAAGATTCTTTCCTTTATTTCAGTTGGTGTTACAATGT
AGACATGTCCTCCCCAACCACTCAAACAGTCACGGTCAACAGATGATAAC
AAAGCTTGAGATACAGTTTCAAACAACTCATCGGGTTCCATATCAGGCTT
GAACATTGCCTCACAGGCACCATAAAGAGACTCTCCAGCAGTTCCAGCAA
CAACAAAATCTTTTGCAAGCTCCTTGGCTCCAATTGAGTCCATTGTGCAG
ATAAAGGGCTTGTCTTCATCACTCAATCCAGCAATAACAGGTTGACAGAA
GTAAGGGCCAAACCTTTTCTCATAAAGCAAAGCAGAGACTAAGCTAGCAA
AAGTTTCAGGCTTCATGTCCCTTTCCTCTCGCAGCTGATACAATTTGTGA
CGAAACACCAGCCTTTGATACAAGGTCTGGGAATCAGTGGCGAGTCCAGA
GAGGCCGATAAAAAGGCGATCGT
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