DN621248

Overview
NameDN621248
Unique NameDN621248
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6034 contig Csv1_Contig6034:1..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN621248 vs. ExPASy Swiss-Prot
Match: CML49_ARATH (Probable calcium-binding protein CML49 OS=Arabidopsis thaliana GN=CML49 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.107e-52
Identity = 107/198 (54.04%), Postives = 123/198 (62.12%), Query Frame = 2
Query:  107 GYASH----------HGGPPSSQPYSAQYGAPPTAQPYSAQYGAPPTAQPYGARPHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPFASLMPSSFPPGTDPNIVACFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDTNELREALMSL 670
            GY +H          +GG P    +   YG  P    +   YGAPP    YG+                                  PFASL+PS+FPPGTDPNIVACFQ ADRDNSG IDDKELQGALSSYNQSFS+RTV LLMY FTN+N RKIGPKEF  +F SLQNWR++FE+ D+DRSG+IDTNELR+ALMSL
Sbjct:   99 GYGAHPSSGPSDYGGYGGAPQQSGHGGGYGGAPQQSGHGGGYGAPPPQASYGS----------------------------------PFASLVPSAFPPGTDPNIVACFQAADRDNSGFIDDKELQGALSSYNQSFSIRTVHLLMYLFTNSNVRKIGPKEFTSLFFSLQNWRSIFERFDKDRSGRIDTNELRDALMSL 262          
BLAST of DN621248 vs. ExPASy Swiss-Prot
Match: CML50_ARATH (Probable calcium-binding protein CML50 OS=Arabidopsis thaliana GN=CML50 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.596e-48
Identity = 107/215 (49.77%), Postives = 126/215 (58.60%), Query Frame = 2
Query:  113 ASHHGGPPSSQPYS---AQYGAPPTAQPYSAQYGAPPTA---------------QP------YGARP-----HXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPFASLMPSSFPPGTDPNIVACFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDTNELREALMSL 670
            +S +G PP S PY+     Y  PP  +PY   YGAPP +               QP      YGA P                                    +PFASL+PS F PGTDPNIVACFQ AD+D SG IDDKELQGALSSY Q FS+RTV LLMY FTN+NA KIGPKEF  +F+SLQNWR++FE+ D+DRSG+ID NELR+AL+SL
Sbjct:   67 SSSYGAPPPSAPYAPSPGDYNKPPKEKPYGGGYGAPPPSGSSDYGSYGAGPRPSQPSGHGGGYGATPPHGVSDYGSYGGAPPRPASSGHGGGYGGYPPQASYGSPFASLIPSGFAPGTDPNIVACFQAADQDGSGFIDDKELQGALSSYQQRFSMRTVHLLMYLFTNSNAMKIGPKEFTALFYSLQNWRSIFERSDKDRSGRIDVNELRDALLSL 281          
BLAST of DN621248 vs. ExPASy Swiss-Prot
Match: PEF1_DANRE (Peflin OS=Danio rerio GN=pef1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.318e-18
Identity = 60/193 (31.09%), Postives = 86/193 (44.56%), Query Frame = 2
Query:  104 QGYASHHGGPPS-SQPYSAQYGAPPTAQPYSAQYGAPPTAQPYGA-RPHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPFASL-MPSSFPPGTDPNIVACFQLADRDNSGLIDDKELQGALSSYNQS-FSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDTNELREALMSL 670
            QGY+   G  P   QP  A Y   P A  Y + YG+ P  Q YG   P+                               P+       + PPG +P     F   D D SG I+ KEL+ AL ++N S F+  T  +++  F  T + ++    F  ++  LQ WRA F++ DRDRSG I+TNE+ +AL  +
Sbjct:    7 QGYSGPGGNAPQWQQPPRAPYAGGPAAGQYGSPYGSAPPGQQYGGGSPYGSYGQPGPRAPYGGGQAPGGPYGGYGQPQGGPYRQQGSAGNVPPGVNPEAYQWFSTVDSDQSGYINAKELKQALMNFNNSSFNDETCIMMLNMFDKTKSGRVDVFGFSALWTFLQQWRAAFQQFDRDRSGSINTNEMHQALSQM 199          
BLAST of DN621248 vs. ExPASy Swiss-Prot
Match: CML48_ARATH (Probable calcium-binding protein CML48 OS=Arabidopsis thaliana GN=CML48 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 5.536e-17
Identity = 45/105 (42.86%), Postives = 70/105 (66.67%), Query Frame = 2
Query:  365 FPPGTDPNIVACFQLADRDNSGLIDDKELQGALS-SYNQSFSLRTVRLLM--YTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDTNELREALMSL 670
            F P T P IV  F+ ADR+ SG +++ EL+ ALS S     S RT+RLL+  Y     +  ++GPKE++++++ L  WRA+F + DRDRSGK+++ +LR+A  +L
Sbjct:   49 FSPETHPEIVRSFESADRNRSGFLEESELRQALSLSGYDGISNRTIRLLLFIYKIPVDSLLRLGPKEYVELWNCLAQWRAIFNRYDRDRSGKMNSTQLRDAFYNL 153          
BLAST of DN621248 vs. ExPASy Swiss-Prot
Match: PEF1_XENLA (Peflin OS=Xenopus laevis GN=pef1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.364e-15
Identity = 63/207 (30.43%), Postives = 89/207 (43.00%), Query Frame = 2
Query:  104 QGYASHHGGPPSSQPYSAQYGAPPTA---QPYSAQYGAPPTAQPYGARPHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXN-----PFASLMPSSF---------PPGTDPNIVACFQLADRDNSGLIDDKELQGALSSYN-QSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDTNELREALMSL 670
            QGY    G PP + P +  YG        QP +A YG P    PYG+ P                               +     P+ S    S+         PPG DP   + FQ  D D+SG I  KEL+ AL + N  SF+  T  ++M  F  +N+ +I    F  ++  +Q WR +F++ DRDRSG I+  EL +AL  +
Sbjct:    8 QGYHGAAGQPPGA-PQTNYYGGQQYGGGVQP-AASYGRPAPGAPYGSPPSGGVYGHPVPGSAAPGAPGGPYGGQAPGGPYSVPGSTPYGSQQHGSYGQGAPAGNIPPGVDPEAFSWFQTVDTDHSGYISLKELKQALVNTNWSSFNDETCTMMMNMFDKSNSGRIDMFGFSALWRFIQQWRNLFQQYDRDRSGSINQGELHQALCQM 212          
BLAST of DN621248 vs. ExPASy Swiss-Prot
Match: PEF1_MOUSE (Peflin OS=Mus musculus GN=Pef1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.969e-14
Identity = 60/189 (31.75%), Postives = 80/189 (42.33%), Query Frame = 2
Query:  107 GYASHHGGPPSSQPYSAQYGAPPTAQPYSAQYGAPPTAQPYGARPHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPFASLMPSSFPPGTDPNIVACFQLADRDNSGLIDDKELQGALSSYN-QSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDTNELREALMSL 670
            GY S  GG PS  P S  YG  P   PY    G  P   PYG +P                                          PP  DP   + FQ  D D+SG I  KEL+ AL + N  SF+  T  +++  F  T + +I    F  ++  LQ WR +F++ DRDRSG I + EL++AL  +
Sbjct:   56 GYPSA-GGVPSGTP-SGPYGGIPPGGPY----GQLPPGGPYGTQPGHYGQ----------------------------------GGVPPNVDPEAYSWFQSVDADHSGYISLKELKQALVNSNWSSFNDETCLMMINMFDKTKSGRIDVAGFSALWKFLQQWRNLFQQYDRDRSGSISSTELQQALSQM 204          
BLAST of DN621248 vs. ExPASy Swiss-Prot
Match: PEF1_RAT (Peflin OS=Rattus norvegicus GN=Pef1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.276e-13
Identity = 59/195 (30.26%), Postives = 82/195 (42.05%), Query Frame = 2
Query:  107 GYASHHGGPPSSQPYSAQYGAPPTAQPYSAQYGAPPTAQPYG-ARPHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPFASLMPSSF-----PPGTDPNIVACFQLADRDNSGLIDDKELQGALSSYN-QSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDTNELREALMSL 670
            GY S  GG PS  P     G PP        YG  P   PYG A P                               +P+ +  P  +     PP  DP   + FQ  D D+SG I  KEL+ AL + N  SF+  T  +++  F  T   +I    F  ++  LQ W+ +F++ DRD SG I + EL++AL  +
Sbjct:   55 GYPSA-GGTPSGTPGGPYGGGPP-----GGPYGGGPPGGPYGQAHP-------------------------------SPYGTQPPGPYGQGGVPPNVDPEAYSWFQSVDADHSGYISLKELKQALVNSNWSSFNDETCLMMINMFDKTKTGRIDVVGFSALWKFLQQWKNLFQQYDRDHSGSISSTELQQALSQM 212          
BLAST of DN621248 vs. ExPASy Swiss-Prot
Match: PEF1_HUMAN (Peflin OS=Homo sapiens GN=PEF1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.713e-13
Identity = 57/199 (28.64%), Postives = 83/199 (41.71%), Query Frame = 2
Query:  116 SHHGGPPSSQPYSAQYGAPPTAQPYSAQYGAPPTAQPYGARPHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPFASLMPSSF-------------PPGTDPNIVACFQLADRDNSGLIDDKELQGALSSYN-QSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDTNELREALMSL 670
            S++ GPP+S     QYG+     P    YG P    PYG                                   P+    PSS+             PP  DP   + FQ  D D+SG I  KEL+ AL + N  SF+  T  +++  F  T + +I    F  ++  +Q W+ +F++ DRDRSG I   EL++AL  +
Sbjct:   24 SYYPGPPNS---GGQYGS---GLPPGGGYGGPAPGGPYGP---PAGGGPYGHPNPGMFPSGTPGGPYGGAAPGGPYGQPPPSSYGAQQPGLYGQGGAPPNVDPEAYSWFQSVDSDHSGYISMKELKQALVNCNWSSFNDETCLMMINMFDKTKSGRIDVYGFSALWKFIQQWKNLFQQYDRDRSGSISYTELQQALSQM 213          
The following BLAST results are available for this feature:
BLAST of DN621248 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
CML49_ARATH3.107e-5254.04Probable calcium-binding protein CML49 OS=Arabidop... [more]
CML50_ARATH1.596e-4849.77Probable calcium-binding protein CML50 OS=Arabidop... [more]
PEF1_DANRE1.318e-1831.09Peflin OS=Danio rerio GN=pef1 PE=2 SV=1[more]
CML48_ARATH5.536e-1742.86Probable calcium-binding protein CML48 OS=Arabidop... [more]
PEF1_XENLA1.364e-1530.43Peflin OS=Xenopus laevis GN=pef1 PE=2 SV=1[more]
PEF1_MOUSE1.969e-1431.75Peflin OS=Mus musculus GN=Pef1 PE=2 SV=1[more]
PEF1_RAT1.276e-1330.26Peflin OS=Rattus norvegicus GN=Pef1 PE=2 SV=1[more]
PEF1_HUMAN3.713e-1328.64Peflin OS=Homo sapiens GN=PEF1 PE=1 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_06H07_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621248 ID=DN621248; Name=DN621248; organism=Citrus sinensis; type=EST; length=671bp
AAACTTAAGACGCGTCGGCTCTCTCTCGAGATTCCACAACATGTCCGGCT
ATCCCCAACCTCCGCCCGGCTACGGCTACGGCTCCGCACAGCCTCCGAGT
TCTCAGGGCTACGCTTCCCATCACGGCGGGCCGCCGAGTTCTCAGCCCTA
CTCTGCTCAGTACGGCGCGCCGCCGACGGCTCAGCCCTACTCTGCTCAGT
ACGGCGCACCGCCGACGGCTCAGCCCTACGGGGCACGGCCACACGCGGCT
CCGTCCGCACCCTCTTACGGCGGGCCTTCTCCGGCTCCTGCTTCTGCTCC
AGGCGGCTATCCGCCGGCTCCGGGATCGTACGGTAATCCGTTTGCATCTC
TAATGCCGTCCAGTTTCCCTCCCGGAACGGATCCGAACATCGTGGCGTGC
TTCCAGTTGGCCGACCGGGACAACAGCGGCCTCATCGACGATAAGGAGTT
GCAAGGAGCCTTGTCTTCTTACAATCAGAGCTTCAGCTTGAGAACCGTTC
GTCTGCTTATGTACACATTCACCAACACTAACGCGAGAAAAATCGGGCCT
AAGGAGTTCATCCAAGTGTTTCACAGTCTTCAAAACTGGAGGGCCATGTT
TGAGAAAGTGGACAGGGACAGGAGTGGAAAGATTGATACGAATGAGTTGC
GGGAGGCTCTTATGAGTCTAG
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