DN621181

Overview
NameDN621181
Unique NameDN621181
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12709 contig Csv1_Contig12709:1538..2188. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN621181 vs. ExPASy Swiss-Prot
Match: LOX2_ARATH (Lipoxygenase 2, chloroplastic OS=Arabidopsis thaliana GN=LOX2 PE=1 SV=1)

HSP 1 Score: 346.665 bits (888), Expect = 6.277e-95
Identity = 155/216 (71.76%), Postives = 174/216 (80.56%), Query Frame = 3
Query:    3 TIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWW 650
            T+FFL+   TLRP+AIELT PP   KPQWKQVF P + +T CWLW LAK H ++HDAGYHQL+SHWLRTH CTEPY+IA NRQLS MHPIYRLL PHFRYTMEIN  ARQ+LVN  GIIE+ F PGKY++E SS  Y K WRFD E LP DLI RGLA ED +A HG++LTI DYPFANDGL LWDAIK+WVTDYV HYYPD+ L+ SDEELQ WW
Sbjct:  490 TLFFLSDDSTLRPVAIELTCPPNINKPQWKQVFTPGYDATSCWLWNLAKTHAISHDAGYHQLISHWLRTHACTEPYIIAANRQLSAMHPIYRLLHPHFRYTMEINARARQSLVNGGGIIETCFWPGKYALELSSAVYGKLWRFDQEGLPADLIKRGLAEEDKTAEHGVRLTIPDYPFANDGLILWDAIKEWVTDYVKHYYPDEELITSDEELQGWW 705          
BLAST of DN621181 vs. ExPASy Swiss-Prot
Match: LOXC2_ORYSJ (Probable lipoxygenase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX2 PE=2 SV=1)

HSP 1 Score: 325.094 bits (832), Expect = 1.956e-88
Identity = 151/216 (69.91%), Postives = 173/216 (80.09%), Query Frame = 3
Query:    3 TIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWW 650
            TIFFLT  GTLR +AIELTRP    +PQW+QVF PS  +T+ WLW++AKAHV AHDAG+H+L++HWLRTHC  EPY+IA NRQLS MHPIY+LL PHFRYTM IN LAR  L++A GIIE SFSP KYSME SSVAYDK WRFD EALP DL+ RG+A EDP+A HGL+L IEDYPFANDGL +WDAIK WV  YV  +YPD   V  DEELQA+W
Sbjct:  534 TIFFLTDDGTLRLLAIELTRPASPSQPQWRQVFTPSTDTTKSWLWRMAKAHVRAHDAGHHELITHWLRTHCAVEPYIIAANRQLSEMHPIYQLLHPHFRYTMRINALARSRLISAAGIIELSFSPQKYSMELSSVAYDKLWRFDMEALPADLVRRGMAEEDPTAEHGLRLAIEDYPFANDGLLIWDAIKTWVQAYVARFYPDADSVAGDEELQAFW 749          
BLAST of DN621181 vs. ExPASy Swiss-Prot
Match: LOXC1_ORYSJ (Lipoxygenase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX1 PE=2 SV=2)

HSP 1 Score: 323.168 bits (827), Expect = 7.433e-88
Identity = 150/216 (69.44%), Postives = 172/216 (79.63%), Query Frame = 3
Query:    3 TIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWW 650
            T+FFLT  GTL+ +AIELTRP    +PQW+QVF PS  +T  WLW++AKAHV AHDAG+H+L++HWLRTHC  EPY+IA NRQLS MHPIY+LL PHFRYTM IN  AR AL++A GIIE SFSP KYSME SSVAYDK WRFD EALP DL+ RG+A EDP+A HGLKL IEDYPFANDGL +WDAIK WV  YV  +YPD   V  DEELQA+W
Sbjct:  517 TVFFLTDDGTLQLLAIELTRPASPSQPQWRQVFTPSTDATMSWLWRMAKAHVRAHDAGHHELITHWLRTHCAVEPYIIAANRQLSEMHPIYQLLRPHFRYTMRINARARSALISAGGIIERSFSPQKYSMELSSVAYDKLWRFDTEALPADLVRRGMAEEDPTAEHGLKLAIEDYPFANDGLLIWDAIKTWVQAYVARFYPDADSVAGDEELQAFW 732          
BLAST of DN621181 vs. ExPASy Swiss-Prot
Match: LOX21_HORVU (Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare GN=LOX2.1 PE=1 SV=1)

HSP 1 Score: 318.931 bits (816), Expect = 1.402e-86
Identity = 151/217 (69.59%), Postives = 171/217 (78.80%), Query Frame = 3
Query:    6 IFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHS--TECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWW 650
            +FFLT  GTLRPIAIELTRP    KPQW+QVF P      T  WLW+LAKAH+LAHDAG HQLVSHWLRTH CTEPY+IA NRQLS MHP+YRLL PHFR+TMEIN  AR  L+NA GIIE SF PG+YS+E SSVAYD+QWRFD EALP+DLI RG+AV +P+    L+L IEDYP+ANDGL +WDAIKQW   YV HYYP  + +  DEELQAWW
Sbjct:  522 LFFLTADGTLRPIAIELTRPKSKKKPQWRQVFTPGCDGSVTGSWLWQLAKAHILAHDAGVHQLVSHWLRTHACTEPYIIAANRQLSQMHPVYRLLHPHFRFTMEINAQARAMLINAGGIIEGSFVPGEYSLELSSVAYDQQWRFDMEALPEDLIRRGMAVRNPNGE--LELAIEDYPYANDGLLVWDAIKQWALTYVQHYYPCAADIVDDEELQAWW 736          
BLAST of DN621181 vs. ExPASy Swiss-Prot
Match: LOX22_HORVU (Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare GN=LOX2.2 PE=1 SV=1)

HSP 1 Score: 306.605 bits (784), Expect = 7.199e-83
Identity = 149/220 (67.73%), Postives = 166/220 (75.45%), Query Frame = 3
Query:    3 TIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLP----SWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWW 650
            T+FFL   GTLRPIAIELTRP    K QW++VF P    S   T  W W+LAK HVL+HD GYHQLVSHWLRTHCC EPYVIA NRQLS MHPIYRLL PHFR+TMEIN  AR  L+ ADGIIE +FSPG++SME SS AYDKQWRFD EALP+DLI RG+AV        L+L IEDYP+ANDGL +WDAIKQW +DYV HYYP    +  DEELQ WW
Sbjct:  520 TLFFLADDGTLRPIAIELTRPKSPHKQQWRKVFTPGSGYSGSVTGSWEWQLAKIHVLSHDTGYHQLVSHWLRTHCCVEPYVIAANRQLSQMHPIYRLLHPHFRFTMEINAQARGMLICADGIIEKTFSPGEFSMEISSAAYDKQWRFDMEALPEDLIRRGMAVRGEDGK--LELAIEDYPYANDGLLVWDAIKQWASDYVAHYYPCAVDIVDDEELQDWW 737          
BLAST of DN621181 vs. ExPASy Swiss-Prot
Match: LOX23_HORVU (Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare GN=LOX2.3 PE=1 SV=1)

HSP 1 Score: 304.679 bits (779), Expect = 2.736e-82
Identity = 143/216 (66.20%), Postives = 167/216 (77.31%), Query Frame = 3
Query:    3 TIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWW 650
            T+FFL+  GTL P+AIELTRP    KPQWK+ F     +TE WLWKLAKAHVL HD GYHQLVSHWLRTH C EPY+IATNRQLS MHP+YRLL PHFRYTMEIN LAR+AL+NADGIIE +F  GKYS+E SSVAY   W+F+ EALP+DLI+RGLAV        L+L I+DYP+A+DGL +W +IKQW +DYV+ YY     V  DEEL+AWW
Sbjct:  492 TVFFLSDEGTLMPLAIELTRPQSPTKPQWKRAFTHGSDATESWLWKLAKAHVLTHDTGYHQLVSHWLRTHACVEPYIIATNRQLSRMHPVYRLLHPHFRYTMEINALAREALINADGIIEEAFLAGKYSIELSSVAYGAAWQFNTEALPEDLINRGLAVRRDDGE--LELAIKDYPYADDGLLIWGSIKQWASDYVDFYYKSDGDVAGDEELRAWW 705          
BLAST of DN621181 vs. ExPASy Swiss-Prot
Match: LOX3_ARATH (Lipoxygenase 3, chloroplastic OS=Arabidopsis thaliana GN=LOX3 PE=2 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 2.397e-78
Identity = 130/216 (60.19%), Postives = 166/216 (76.85%), Query Frame = 3
Query:    3 TIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWW 650
            TIFFLT  GTL+P+AIEL+ PP   K + K+V  P   +T  W+W+LAKAHV ++DAG HQLV+HWLRTH C EP+++A +RQLS MHPI++LLDPH RYT+EIN LARQ+L++ADG+IE  F+ G Y ME S+ AY   WRFD E LP DLI RG+A+ D + PHGLKL IEDYP+ANDGL LW AI+ WV  YV  YYP+ +L+++D ELQ+W+
Sbjct:  514 TIFFLTRLGTLKPVAIELSLPPHGPKHRSKRVLTPPVDATSNWMWQLAKAHVSSNDAGVHQLVNHWLRTHACLEPFILAAHRQLSAMHPIFKLLDPHMRYTLEINALARQSLISADGVIEGGFTAGAYGMEMSAAAYKSSWRFDMEGLPADLIRRGMAIPDATQPHGLKLLIEDYPYANDGLLLWSAIQTWVRTYVERYYPNPNLIKTDSELQSWY 729          
BLAST of DN621181 vs. ExPASy Swiss-Prot
Match: LOX4_ARATH (Lipoxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=LOX4 PE=2 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 2.930e-76
Identity = 130/217 (59.91%), Postives = 166/217 (76.50%), Query Frame = 3
Query:    3 TIFFLTPAGTLRPIAIELTRPPMNGKPQW-KQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWW 650
            TI FLT  GTL+PIAIEL+ P  +   Q  K+V  P   +T  W+W+LAKAHV ++DAG HQLV+HWLRTH C EP+++A +RQLS MHPI++LLDPH RYT+EIN +ARQ L++ADG+IES F+ G+Y +E SS AY  +WRFD E LP DLI RG+AV DP+ PHGLKL +EDYP+ANDGL LW AI+ WV  YV  YY + +L+++D ELQAW+
Sbjct:  520 TILFLTRLGTLKPIAIELSLPSQSSSNQKSKRVVTPPVDATSNWMWQLAKAHVGSNDAGVHQLVNHWLRTHACLEPFILAAHRQLSAMHPIFKLLDPHMRYTLEINAVARQTLISADGVIESCFTAGQYGLEISSAAYKNKWRFDMEGLPADLIRRGMAVPDPTQPHGLKLLVEDYPYANDGLLLWSAIQTWVRTYVERYYANSNLIQTDTELQAWY 736          
BLAST of DN621181 vs. ExPASy Swiss-Prot
Match: LOX5_ORYSJ (Putative lipoxygenase 5 OS=Oryza sativa subsp. japonica GN=Os04g0447100 PE=3 SV=2)

HSP 1 Score: 283.878 bits (725), Expect = 4.997e-76
Identity = 131/216 (60.65%), Postives = 163/216 (75.46%), Query Frame = 3
Query:    6 IFFLTPAGTLRPIAIELTRPPM-NGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWW 650
            +FFLT AGTL+PIAIEL  PPM +G  + K+VF P   +T  WLW+LAKAHV ++DAG HQL++HWLRTH C EP++IA +RQ+S MHPI++LL PH RYT++IN LARQ L+N DG+IES F+PG   ME S+ AY + WR D E LP DLI RG+AVEDPS PHGL+L IEDYP+A DGL LW AI +W   YV  YYP    V++D ELQ+W+
Sbjct:  495 VFFLTAAGTLKPIAIELCLPPMTDGCKRAKRVFTPPADATSNWLWQLAKAHVCSNDAGVHQLINHWLRTHACMEPFIIAAHRQMSAMHPIFKLLKPHMRYTLKINALARQILINGDGVIESGFTPGNVCMEMSAFAYRELWRLDQEGLPADLIRRGMAVEDPSQPHGLRLLIEDYPYAADGLLLWSAISRWCEAYVAAYYPSDEAVQADYELQSWY 710          
BLAST of DN621181 vs. ExPASy Swiss-Prot
Match: LOX6_ORYSJ (Probable lipoxygenase 6 OS=Oryza sativa subsp. japonica GN=Os03g0179900 PE=2 SV=2)

HSP 1 Score: 282.337 bits (721), Expect = 1.454e-75
Identity = 131/217 (60.37%), Postives = 162/217 (74.65%), Query Frame = 3
Query:    3 TIFFLTPAGTLRPIAIELTRPPMN-GKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWW 650
            TIFFLT AGTL+PIAIEL+ PP   G+P+  +V  P + +T  WLW LAKAHV ++DAG HQLV+HWLRTH   EP+++A +R +S MHPI++LL PH RYT+EIN LARQ+L+NADG+IES F+PG  S E S+  Y   WRFD E LP DLI RG+AVED + PHG++L IEDYP+ANDGL LW AI+ WV  YV  YYPD   V+ D ELQ W+
Sbjct:  508 TIFFLTEAGTLKPIAIELSLPPAKPGEPRPSKVLTPPYDATSNWLWMLAKAHVSSNDAGVHQLVNHWLRTHATMEPFILAAHRHMSAMHPIFKLLHPHMRYTLEINALARQSLINADGVIESCFTPGPVSGEISAAYYRNHWRFDLEGLPSDLIRRGVAVEDATQPHGVRLLIEDYPYANDGLLLWSAIRSWVESYVQLYYPDAGTVQCDLELQGWY 724          
The following BLAST results are available for this feature:
BLAST of DN621181 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
LOX2_ARATH6.277e-9571.76Lipoxygenase 2, chloroplastic OS=Arabidopsis thali... [more]
LOXC2_ORYSJ1.956e-8869.91Probable lipoxygenase 8, chloroplastic OS=Oryza sa... [more]
LOXC1_ORYSJ7.433e-8869.44Lipoxygenase 7, chloroplastic OS=Oryza sativa subs... [more]
LOX21_HORVU1.402e-8669.59Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare... [more]
LOX22_HORVU7.199e-8367.73Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare... [more]
LOX23_HORVU2.736e-8266.20Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare... [more]
LOX3_ARATH2.397e-7860.19Lipoxygenase 3, chloroplastic OS=Arabidopsis thali... [more]
LOX4_ARATH2.930e-7659.91Lipoxygenase 4, chloroplastic OS=Arabidopsis thali... [more]
LOX5_ORYSJ4.997e-7660.65Putative lipoxygenase 5 OS=Oryza sativa subsp. jap... [more]
LOX6_ORYSJ1.454e-7560.37Probable lipoxygenase 6 OS=Oryza sativa subsp. jap... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_06F19_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006F19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621181 ID=DN621181; Name=DN621181; organism=Citrus sinensis; type=EST; length=651bp
GCACAATTTTCTTCCTAACACCAGCCGGCACATTGAGACCAATAGCTATT
GAGCTCACTCGGCCTCCAATGAATGGCAAGCCACAATGGAAACAAGTGTT
TTTACCTTCTTGGCACTCTACTGAGTGCTGGCTTTGGAAGCTAGCCAAAG
CTCATGTCCTTGCTCATGATGCTGGCTATCACCAGCTTGTCAGCCATTGG
TTAAGAACTCATTGTTGCACAGAACCTTACGTAATAGCAACCAATCGGCA
ACTCAGCGTGATGCATCCAATCTATAGATTGTTGGATCCTCATTTTCGAT
ACACAATGGAGATCAATGGTTTGGCTCGACAAGCTCTTGTTAATGCTGAT
GGAATCATTGAAAGCTCATTCTCACCTGGAAAGTACTCTATGGAATTCAG
CTCTGTTGCCTATGACAAGCAATGGCGCTTTGACCATGAAGCACTCCCCA
AAGACCTAATTAGCCGGGGATTGGCTGTTGAAGATCCAAGTGCTCCACAT
GGCTTGAAGCTAACAATTGAAGACTATCCTTTTGCCAATGATGGCCTTGA
TCTCTGGGATGCCATAAAACAATGGGTTACCGATTATGTTAATCACTACT
ACCCTGATAAAAGCCTTGTAGAATCTGATGAAGAGCTCCAAGCTTGGTGG
A
back to top