DN621178

Overview
NameDN621178
Unique NameDN621178
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2199 contig Csv1_Contig2199:186..816. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN621178 vs. ExPASy Swiss-Prot
Match: HMGL_IPONI (HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.126e-20
Identity = 49/86 (56.98%), Postives = 58/86 (67.44%), Query Frame = -3
Query:  354 TKNVKSAKKDPNKLKRLPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXKLDYEKLMTAYNKNQ 611
            TK  K A KDPNK KR PSAFFVF+E+FRK YK++HPN K+V+ VGKAGG+KWK LT              K +YEK + AYNK Q
Sbjct:   23 TKKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQ 108          
BLAST of DN621178 vs. ExPASy Swiss-Prot
Match: HMGL_SOYBN (HMG1/2-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.351e-19
Identity = 48/80 (60.00%), Postives = 56/80 (70.00%), Query Frame = -3
Query:  354 AKKDPNKLKRLPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXKLDYEKLMTAYNKNQ 593
            A KDPNK KR PSAFFVF+EEFRKV+ +EHP  KAVSAVGKA G KWK+++D             K++YEK M AYNK Q
Sbjct:   37 AAKDPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQ 116          
BLAST of DN621178 vs. ExPASy Swiss-Prot
Match: MNB1B_MAIZE (DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.902e-17
Identity = 45/93 (48.39%), Postives = 61/93 (65.59%), Query Frame = -3
Query:  354 RSSNKRTKNVKS-AKKDPNKLKRLPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXKLDYEKLMTAYNKNQ 629
            + + K  K  K  A KDPNK KR PSAFFVF+EEFRK +K+++P  K+V+AVGKA G++WKSL++             KL+Y K + AYNK +
Sbjct:   21 KGAEKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNKGE 113          
BLAST of DN621178 vs. ExPASy Swiss-Prot
Match: HMGL_WHEAT (HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.060e-15
Identity = 41/80 (51.25%), Postives = 54/80 (67.50%), Query Frame = -3
Query:  354 AKKDPNKLKRLPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXKLDYEKLMTAYNKNQ 593
            A KDPNK KR PSAFFVF+ EFR+ +KQ++P  K+V+AVGKA GE+WKSL++             K +Y K + AYNK +
Sbjct:   35 AGKDPNKPKRAPSAFFVFMGEFREEFKQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKANKLKGEYNKAIAAYNKGE 114          
BLAST of DN621178 vs. ExPASy Swiss-Prot
Match: HMGL_VICFA (HMG1/2-like protein OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.060e-15
Identity = 41/76 (53.95%), Postives = 53/76 (69.74%), Query Frame = -3
Query:  360 KDPNKLKRLPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXKLDYEKLMTAYNK 587
            KDPNK KR PSAFFVF+ +FR+ YK++HPN K+V+AVGKA GE+WKSL++             K +YE  + AYNK
Sbjct:   40 KDPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYNK 115          
The following BLAST results are available for this feature:
BLAST of DN621178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
HMGL_IPONI2.126e-2056.98HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1[more]
HMGL_SOYBN2.351e-1960.00HMG1/2-like protein OS=Glycine max PE=2 SV=1[more]
MNB1B_MAIZE4.902e-1748.39DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=... [more]
HMGL_WHEAT2.060e-1551.25HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1[more]
HMGL_VICFA2.060e-1553.95HMG1/2-like protein OS=Vicia faba PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_06F18_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006F18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621178 ID=DN621178; Name=DN621178; organism=Citrus sinensis; type=EST; length=631bp
TTTTTTTTTTTTTTTTTACTACAAACTCTGTAACCATATATAAAACATTA
CTCAAAACAGTAGGTATATATGCAGACTGCAGAGGAATGCAGTACCAGCA
TTACATTACAAGTTGGCAGAACGAAGAGTTGAATTCTTTTATAGTTAAAA
ACACAAAATAACCCAACTGCATGGTCATACAACGTCCAGGATTTTTTCTG
GATAAAGCAAAGGAACTATACCCAGTGGCGCTCCTGAATCTAGTCGTCGT
CCTCCTCTTCATCCTCCTCTTCAAGTTCTTCATCATCATCGTCGTCATGC
ACCTCGGATTTTGACTTCTCAAACTCCTCTTCATCTTCATCTTCAGTACT
TTCCTGGTTCTTGTTGTATGCTGTCATCAGCTTTTCATAATCCAATTTCC
TTTTTGCTGCTTTTGCTTCAAATGGGGCTTTTTCTGCATCAGTCAGCGAC
TTCCATTTCTCTCCCCCAGCTTTCCCCACAGCTGAAACAGCTTTAACATT
GGGATGCTCTTGTTTGTAAACCTTTCTGAACTCTTCTAGGAAAACAAAAA
AAGCACTAGGAAGCCTCTTCAGCTTGTTAGGGTCTTTCTTTGCTGACTTG
ACATTCTTGGTGCGCTTGTTGCTACTCCTAC
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