DN621176

Overview
NameDN621176
Unique NameDN621176
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length703
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1207 contig Csv1_Contig1207:189..890. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN621176 vs. ExPASy Swiss-Prot
Match: LBD41_ARATH (LOB domain-containing protein 41 OS=Arabidopsis thaliana GN=LBD41 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.943e-15
Identity = 59/157 (37.58%), Postives = 81/157 (51.59%), Query Frame = -3 
Query:  258 NPIYGSVGLMWSGRWHLCQAAVEAVFRGEPVTPLSSESA-------LQAGDIRHVSKDEXXXXXXAVSDKLHKVKSRRFKR-SAPKPRSKPERAADAKVVEPLLDNSGGESTSCDPELTQRDSGEGDSVSVETVEATLAKTDGGADGS-DVDLELSL 701
            NPIYGSVGL+WSG W LCQ AVEAV +GEPV  +++++A       L+  DIRH+SKD+        S  L   K+RR KR S    +++ E  +D        + S   S S   E+     GE    S   V   LA +     GS ++ L+L+L
Sbjct:   79 NPIYGSVGLLWSGNWQLCQDAVEAVMKGEPVKEIATDAATIGQGPPLKIYDIRHISKDDNSAAAATGSTDLKLAKTRRAKRVSTVAIQAESEGKSD--------EASHDSSLSHQSEIVAAHEGESKE-SESNVSEVLAFSPPAVKGSGEIKLDLTL 226
[Close]
BLAST of DN621176 vs. ExPASy Swiss-Prot
Match: LBD40_ARATH (LOB domain-containing protein 40 OS=Arabidopsis thaliana GN=LBD40 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.818e-13
Identity = 38/62 (61.29%), Postives = 46/62 (74.19%), Query Frame = -3 
Query:  546 NPIYGSVGLMWSGRWHLCQAAVEAVFRGEPVTPLSSESAL---------QAGDIRHV-SKDE 701
            NPIYGSVGL+WSG WHLCQAAVEAV RG PVTP++ ++A+         +  DIRHV S+DE
Sbjct:   79 NPIYGSVGLLWSGNWHLCQAAVEAVMRGSPVTPIACDAAVTGQAPPFNNKLCDIRHVSSRDE 140
The following BLAST results are available for this feature:
BLAST of DN621176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
LBD41_ARATH1.943e-1537.58LOB domain-containing protein 41 OS=Arabidopsis th... [more]
LBD40_ARATH1.818e-1361.29LOB domain-containing protein 40 OS=Arabidopsis th... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_06F17_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006F17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621176 ID=DN621176; Name=DN621176; organism=Citrus sinensis; type=EST; length=703bp
TTTTTTTTTTTTTTTTTGCTATAAGTGTATATATGTATATAACCTCCTTT
CTATGTGCTACCTACAATGTACACTTCCGCGGCCAGCCCTGAACAATGAA
AAATGATCGAATGAACTAAAACCCTCTCATCCAAGCCGTCAAAACTGCTA
ATAACATGGACTAGGCCGCACCAGATTGCTATTAAACAATCACCGCACAC
GTGGCATCATCAGAAACAGATCAACTTAAATTTTTACCAGGCTTAAATGC
CGAAGCCCAAAGATAACTCTAAATCCACGTCACTCCCATCGGCCCCACCA
TCAGTCTTCGCTAGCGTAGCCTCTACGGTCTCAACTGACACGCTGTCACC
TTCTCCGCTGTCACGCTGAGTCAGCTCCGGGTCGCAACTCGTGGATTCAC
CACCAGAGTTATCCAACAGAGGCTCAACAACCTTGGCATCAGCAGCCCGC
TCCGGCTTCGACCTGGGCTTAGGAGCCGAGCGCTTGAATCTCCTAGACTT
GACCTTATGAAGCTTATCAGAAACTGCAGCCGCCGCAGCGGAGCTCTCAT
CTTTAGACACGTGGCGGATATCACCGGCTTGAAGAGCAGACTCAGACGAA
AGAGGAGTGACCGGCTCGCCTCTGAAAACAGCTTCAACAGCGGCTTGGCA
GAGGTGCCAGCGTCCGGACCACATCAGCCCGACGGAACCGTAGATCGGGT
TCA
back to top