DN621174

Overview
NameDN621174
Unique NameDN621174
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6028 contig Csv1_Contig6028:1..755. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN621174 vs. ExPASy Swiss-Prot
Match: RL3_ORYSJ (60S ribosomal protein L3 OS=Oryza sativa subsp. japonica GN=RPL3 PE=2 SV=2)

HSP 1 Score: 312.383 bits (799), Expect = 1.714e-84
Identity = 146/163 (89.57%), Postives = 156/163 (95.71%), Query Frame = -3
Query:  181 KGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQRTQEKAKYYGRLKA 669
            KGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVS+TVARAGQNGYHHRTEMNKK+YK+GK+ QESH+A TEFDRTEKDITPMGGFPHYGVV  DYL+IKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQ T EK +++G+LKA
Sbjct:  227 KGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKSGQESHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLKA 389          
BLAST of DN621174 vs. ExPASy Swiss-Prot
Match: RL32_ARATH (60S ribosomal protein L3-2 OS=Arabidopsis thaliana GN=ARP2 PE=2 SV=4)

HSP 1 Score: 304.679 bits (779), Expect = 3.574e-82
Identity = 140/160 (87.50%), Postives = 153/160 (95.62%), Query Frame = -3
Query:  190 KGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQRTQEKAKYYGR 669
            KGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVS+TVARAGQNGYHHRTEMNKK+Y++GK  QE+HSAMTE+DRTEKDITPMGGFPHYG+V EDYL+IKGCCVGPKKRVVTLRQ+LLKQTSRLA+EEIKLKFID +S  GHGRFQ +QEKAK+YGR
Sbjct:  227 KGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYRVGKVGQETHSAMTEYDRTEKDITPMGGFPHYGIVKEDYLMIKGCCVGPKKRVVTLRQTLLKQTSRLAMEEIKLKFIDAASNGGHGRFQTSQEKAKFYGR 386          
BLAST of DN621174 vs. ExPASy Swiss-Prot
Match: RL31_ARATH (60S ribosomal protein L3-1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=5)

HSP 1 Score: 296.204 bits (757), Expect = 1.271e-79
Identity = 136/161 (84.47%), Postives = 151/161 (93.79%), Query Frame = -3
Query:  187 KGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQRTQEKAKYYGRL 669
            KGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVS+TVARAGQNGYHHRTE+NKKIY+LGK   E+H+AMTE+DRTEKD+TPMGGFPHYG+V +DYL+IKGCCVGPKKRVVTLRQSLL QTSRLALEEIKLKFIDT+S FGHGRFQ + EK ++Y R+
Sbjct:  227 KGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKKIYRLGKVGTEAHTAMTEYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLTQTSRLALEEIKLKFIDTASIFGHGRFQTSLEKMRFYNRV 387          
BLAST of DN621174 vs. ExPASy Swiss-Prot
Match: RL3_DROME (60S ribosomal protein L3 OS=Drosophila melanogaster GN=RpL3 PE=1 SV=3)

HSP 1 Score: 236.884 bits (603), Expect = 9.151e-62
Identity = 110/168 (65.48%), Postives = 133/168 (79.17%), Query Frame = -3
Query:  184 KGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQES------HSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQRTQEKAKYYGRLK 669
            KG++GV +RW   +LPRKTH+GLRKVACIGAWHP+RVS TVARAGQ GYHHRTE+NKKIY++G            ++A TE+D T+K ITPMGGFPHYG VN D+++IKGCC+G KKR++TLR+SLLK T R ALE+IKLKFIDTSSK GHGRFQ   +K  + G LK
Sbjct:  226 KGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLK 393          
BLAST of DN621174 vs. ExPASy Swiss-Prot
Match: RL3_TOXCA (60S ribosomal protein L3 OS=Toxocara canis GN=RPL3 PE=2 SV=2)

HSP 1 Score: 234.572 bits (597), Expect = 4.542e-61
Identity = 107/165 (64.85%), Postives = 134/165 (81.21%), Query Frame = -3
Query:  184 KGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKA---SQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQRTQEKAKYYGRLK 669
            KG++GV +RW   +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE+NKKIY+LGK+    +   +  T++D TEK + PMGGFPHYG+VN+D+++I+GCCVG KKR +TLR+SL+ QT R A E+I LK+IDTSSKFGHGRFQ   EK  + G+LK
Sbjct:  226 KGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEVNKKIYRLGKSCLTEEGKKNGGTDYDITEKSVNPMGGFPHYGLVNQDFVMIRGCCVGSKKRPITLRKSLIVQTKRFAHEKINLKWIDTSSKFGHGRFQTHAEKRAFMGKLK 390          
BLAST of DN621174 vs. ExPASy Swiss-Prot
Match: RL3_MOUSE (60S ribosomal protein L3 OS=Mus musculus GN=Rpl3 PE=2 SV=2)

HSP 1 Score: 228.024 bits (580), Expect = 4.251e-59
Identity = 108/168 (64.29%), Postives = 132/168 (78.57%), Query Frame = -3
Query:  184 KGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKA------SQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQRTQEKAKYYGRLK 669
            KGY+GV +RW   +LPRKTHRGLRKVACIGAWHPARV+FTVARAGQ GYHHRTE+NKKIYK+G+           ++A T++D ++K I P+GGF HYG V  D++++KGC VG KKRV+TLR+SLL QT R ALE+I LKFIDT+SKFGHGRFQ  +EK  + G LK
Sbjct:  226 KGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFTVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393          
BLAST of DN621174 vs. ExPASy Swiss-Prot
Match: RL3_RAT (60S ribosomal protein L3 OS=Rattus norvegicus GN=Rpl3 PE=1 SV=3)

HSP 1 Score: 226.483 bits (576), Expect = 1.237e-58
Identity = 107/168 (63.69%), Postives = 132/168 (78.57%), Query Frame = -3
Query:  184 KGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKA------SQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQRTQEKAKYYGRLK 669
            KGY+GV +RW   +LPRKTHRGLRKVACIGAWHPARV+F+VARAGQ GYHHRTE+NKKIYK+G+           ++A T++D ++K I P+GGF HYG V  D++++KGC VG KKRV+TLR+SLL QT R ALE+I LKFIDT+SKFGHGRFQ  +EK  + G LK
Sbjct:  226 KGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393          
BLAST of DN621174 vs. ExPASy Swiss-Prot
Match: RL3_CAEEL (60S ribosomal protein L3 OS=Caenorhabditis elegans GN=rpl-3 PE=1 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.237e-58
Identity = 103/167 (61.68%), Postives = 136/167 (81.44%), Query Frame = -3
Query:  175 GYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKAS---QESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQRTQEKAKYYGRLKA*F 666
            G++GV +RW   +LPRKTH+GLRKVACIGAWHP+RV+FTVARAGQ G+HHRT +N KIY++GK++   +  ++  TEFD T+K ITPMGGFP YG+VN+DY++++G  +GPKKR++TLR+SL+ QT R+A E+I LK+IDTSSK GHGRFQ T EK  + G+LK  F
Sbjct:  227 GFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEGKNNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDF 393          
BLAST of DN621174 vs. ExPASy Swiss-Prot
Match: RL3_BOVIN (60S ribosomal protein L3 OS=Bos taurus GN=RPL3 PE=2 SV=2)

HSP 1 Score: 226.483 bits (576), Expect = 1.237e-58
Identity = 107/168 (63.69%), Postives = 132/168 (78.57%), Query Frame = -3
Query:  184 KGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKA------SQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQRTQEKAKYYGRLK 669
            KGY+GV +RW   +LPRKTHRGLRKVACIGAWHPARV+F+VARAGQ GYHHRTE+NKKIYK+G+           ++A T++D ++K I P+GGF HYG V  D++++KGC VG KKRV+TLR+SLL QT R ALE+I LKFIDT+SKFGHGRFQ  +EK  + G LK
Sbjct:  226 KGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLK 393          
BLAST of DN621174 vs. ExPASy Swiss-Prot
Match: RL3_ASHGO (60S ribosomal protein L3 OS=Ashbya gossypii GN=RPL3 PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.237e-58
Identity = 107/161 (66.46%), Postives = 127/161 (78.88%), Query Frame = -3
Query:  184 GYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQRTQEKAKYYGRLK 666
            G+EGV  RWG  +LPRKTHRGLRKVACIGAWHPA V +TVARAGQNGYHHRT +N K+Y++GK   E ++A TEFDRT+K ITPMGGF HYG VN D++++KG   G +KRVVTLR+SL   TSR ALEE+ LK+IDT+SKFG GRFQ   EK  + G LK
Sbjct:  226 GFEGVTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWTVARAGQNGYHHRTSINHKVYRIGKGGDEGNAA-TEFDRTKKTITPMGGFVHYGAVNNDFVMVKGSIPGTRKRVVTLRKSLYTSTSRRALEEVNLKWIDTASKFGKGRFQTPAEKHAFMGTLK 385          
The following BLAST results are available for this feature:
BLAST of DN621174 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RL3_ORYSJ1.714e-8489.5760S ribosomal protein L3 OS=Oryza sativa subsp. ja... [more]
RL32_ARATH3.574e-8287.5060S ribosomal protein L3-2 OS=Arabidopsis thaliana... [more]
RL31_ARATH1.271e-7984.4760S ribosomal protein L3-1 OS=Arabidopsis thaliana... [more]
RL3_DROME9.151e-6265.4860S ribosomal protein L3 OS=Drosophila melanogaste... [more]
RL3_TOXCA4.542e-6164.8560S ribosomal protein L3 OS=Toxocara canis GN=RPL3... [more]
RL3_MOUSE4.251e-5964.2960S ribosomal protein L3 OS=Mus musculus GN=Rpl3 P... [more]
RL3_RAT1.237e-5863.6960S ribosomal protein L3 OS=Rattus norvegicus GN=R... [more]
RL3_CAEEL1.237e-5861.6860S ribosomal protein L3 OS=Caenorhabditis elegans... [more]
RL3_BOVIN1.237e-5863.6960S ribosomal protein L3 OS=Bos taurus GN=RPL3 PE=... [more]
RL3_ASHGO1.237e-5866.4660S ribosomal protein L3 OS=Ashbya gossypii GN=RPL... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06F16_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006F16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621174 ID=DN621174; Name=DN621174; organism=Citrus sinensis; type=EST; length=755bp
ATACCGGTAAGATGTATTAACGCGCAAAAAAGAAACCATGCACAAATGAA
GTTTCAAAGAACTGCCAGTGTAGCCATAGCCATATTAATTCAAAATAGAG
ACTAGAATGACCAACAATCTTAGATGTTCAAAACTACCCTGAAACCAAAG
GCAATCTCTTTTTCAACTTGGCCAAAATCAAGCCTTGAGCCTTCCATAGT
ACTTGGCCTTCTCCTGAGTTCTCTGGAACCGACCATGGCCGAACTTGGAG
GATGTGTCAATGAACTTGAGCTTAATCTCCTCCAATGCAAGCCTAGACGT
CTGCTTCAGTAGGGACTGCCTCAAGGTCACAACACGCTTCTTAGGTCCAA
CACAGCAGCCCTTGATCAGCAGGTAATCTTCATTGACTACACCATAGTGG
GGGAAGCCTCCCATTGGGGTGATATCCTTCTCCGTCCTGTCAAATTCAGT
CATGGCAGAATGAGACTCCTGGCTGGCCTTCCCAAGCTTGTAAATTTTCT
TGTTCATCTCTGTACGGTGATGGTAGCCGTTCTGCCCAGCTCTAGCAACA
GTAAAGGAGACCCTAGCCGGATGCCAGGCACCAATACAAGCAACCTTGCG
TAGACCACGGTGAGTCTTACGAGGGAGACGAGTAACACCCCAACGAGTAA
CAACACCCTCATATCCCTTAAACAAAAACAGAGTAAGCTCAGATCTTCAT
CATTGATCTTAATCACATCAGCACTTTCCCATTGGCTGATGCCTCAAGTT
ATAAA
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