DN621157

Overview
NameDN621157
Unique NameDN621157
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5846 contig Csv1_Contig5846:1217..1936. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN621157 vs. ExPASy Swiss-Prot
Match: UPL3_ARATH (E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana GN=UPL3 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.308e-42
Identity = 84/94 (89.36%), Postives = 90/94 (95.74%), Query Frame = -3
Query:  437 QQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 718
            QQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSST+ + A+NG G SE+ADDDLPSVMTCANYLKLPPYSTKEIMYKKL+YAI+EGQGSFDLS
Sbjct: 1796 QQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTS-SAAANGAGASETADDDLPSVMTCANYLKLPPYSTKEIMYKKLLYAINEGQGSFDLS 1888          
BLAST of DN621157 vs. ExPASy Swiss-Prot
Match: UPL4_ARATH (E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana GN=UPL4 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.624e-28
Identity = 65/94 (69.15%), Postives = 73/94 (77.66%), Query Frame = -3
Query:  437 QQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 718
            QQRAF QFVTG+PRLP GGLA L+PKLTIVRKH S             +S+D DLPSVMTCANYLKLPPYS+KE M +KL+YAI+EGQGSF LS
Sbjct: 1422 QQRAFLQFVTGSPRLPHGGLASLSPKLTIVRKHGS-------------DSSDTDLPSVMTCANYLKLPPYSSKEKMKEKLIYAITEGQGSFHLS 1502          
BLAST of DN621157 vs. ExPASy Swiss-Prot
Match: TRIPC_HUMAN (Probable E3 ubiquitin-protein ligase TRIP12 OS=Homo sapiens GN=TRIP12 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.635e-20
Identity = 55/94 (58.51%), Postives = 62/94 (65.96%), Query Frame = -3
Query:  437 QQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 718
            QQR F QFVTG+PRLP GG   LNP LTIVRK   +           +E+ DD LPSVMTC NYLKLP YS+ EIM +KL+ A  EGQ SF LS
Sbjct: 1910 QQRLFLQFVTGSPRLPVGGFRSLNPPLTIVRKTFES-----------TENPDDFLPSVMTCVNYLKLPDYSSIEIMREKLLIAAREGQQSFHLS 1992          
BLAST of DN621157 vs. ExPASy Swiss-Prot
Match: UFD4_YEAST (Ubiquitin fusion degradation protein 4 OS=Saccharomyces cerevisiae GN=UFD4 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.491e-18
Identity = 50/94 (53.19%), Postives = 64/94 (68.09%), Query Frame = -3
Query:  437 QQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 718
            ++R F QF+TG+P+LP GG   LNPK T+V KH       A +G     +AD+ LPSVMTCANYLKLP Y++K+IM  +L  AI EG G+F LS
Sbjct: 1401 ERRLFLQFLTGSPKLPIGGFKSLNPKFTVVLKH-------AEDGL----TADEYLPSVMTCANYLKLPKYTSKDIMRSRLCQAIEEGAGAFLLS 1483          
BLAST of DN621157 vs. ExPASy Swiss-Prot
Match: YDE1_SCHPO (Probable ubiquitin fusion degradation protein C12B10.01c OS=Schizosaccharomyces pombe GN=SPAC12B10.01c PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 9.665e-18
Identity = 49/94 (52.13%), Postives = 60/94 (63.83%), Query Frame = -3
Query:  437 QQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 718
            +QR F QF+TG+ +LP GG A LNP LT+VR+ +            P    DD LPSVMTC NYLKLP YS+ E++  +L  AI EGQGSF LS
Sbjct: 1565 EQRDFLQFITGSRKLPIGGFAGLNPPLTVVRRLNE-----------PPYVPDDYLPSVMTCVNYLKLPEYSSSEVLGSRLSKAILEGQGSFHLS 1647          
BLAST of DN621157 vs. ExPASy Swiss-Prot
Match: HECD1_HUMAN (E3 ubiquitin-protein ligase HECTD1 OS=Homo sapiens GN=HECTD1 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.167e-13
Identity = 40/86 (46.51%), Postives = 53/86 (61.63%), Query Frame = -3
Query:  461 QQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISE 718
            +++AF QF TG   LPPGGLA L+P+LT+VRK  +T               D   PSV TC +YLKLP YS++EIM ++L+ A  E
Sbjct: 2536 ERKAFLQFTTGCSTLPPGGLANLHPRLTVVRKVDAT---------------DASYPSVNTCVHYLKLPEYSSEEIMRERLLAATME 2606          
The following BLAST results are available for this feature:
BLAST of DN621157 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
UPL3_ARATH4.308e-4289.36E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis th... [more]
UPL4_ARATH4.624e-2869.15E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis th... [more]
TRIPC_HUMAN4.635e-2058.51Probable E3 ubiquitin-protein ligase TRIP12 OS=Hom... [more]
UFD4_YEAST1.491e-1853.19Ubiquitin fusion degradation protein 4 OS=Saccharo... [more]
YDE1_SCHPO9.665e-1852.13Probable ubiquitin fusion degradation protein C12B... [more]
HECD1_HUMAN7.167e-1346.51E3 ubiquitin-protein ligase HECTD1 OS=Homo sapiens... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_06F07_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621157 ID=DN621157; Name=DN621157; organism=Citrus sinensis; type=EST; length=720bp
TTTTTTTTTTTTTTTTTGAGCTTAAAATAAGGCATAACATTTCAACAATT
TATTTTTCCTTCCCATCATTTTTATGCCATACATGTTATGTCGACTCTGC
AGCCAATAACTTGTCAATTGAGGGAAAAAAGACAAAAAATCTAAGTTTCC
TATTTATATACAAAGTCCTAGCAGCAGCCAAAAAACTGCTCCACAATTTC
CCTCTTCAAATCTCTGTTGAGAGAGTGTGGCACTGTGGCAGCCTGAAGTC
TGACCTGAAACAAAAAAAATCAACTTGCCAATGATGTGAACATTGATACA
AGGGCAGTGAAAAGCAGCCATTATTTGACTGAAATATGATGCTACTTTCA
AAGATGAATAATCCCCAGGTAAGAGAATTGACTTGATGACACATATATTA
ATATACAAAGGTCCATCGGTTAGTTTTGAGAACTCATGACAGATCAAAAG
ATCCCTGCCCTTCGCTTATTGCATAAACCAGTTTCTTGTACATAATTTCC
TTGGTAGAGTAAGGAGGAAGCTTCAGGTAATTGGCACAAGTCATGACACT
TGGCAAGTCATCATCCGCTGATTCCGAAGGCCCGGTTCCATTTGATGCTG
TATTAGGTGCAGTTGAAGAATGCTTTCTGACAATGGTAAGCTTTGGATTC
AGCACCGCCAACCCACCCGGTGGAAGACGAGGTGCACCAGTAACAAACTG
ACAGAAGGCACGCTGCTGAT
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