DN621154

Overview
NameDN621154
Unique NameDN621154
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5794 contig Csv1_Contig5794:1..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN621154 vs. ExPASy Swiss-Prot
Match: RS23_FRAAN (40S ribosomal protein S23 OS=Fragaria ananassa GN=RPS23 PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.680e-55
Identity = 103/105 (98.10%), Postives = 104/105 (99.05%), Query Frame = 3
Query:  393 KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRK 707
            KTRGMGA RKLK+HRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRK
Sbjct:    3 KTRGMGAARKLKNHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRK 107          
BLAST of DN621154 vs. ExPASy Swiss-Prot
Match: RS23_EUPES (40S ribosomal protein S23 OS=Euphorbia esula GN=RPS23 PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 4.809e-54
Identity = 102/105 (97.14%), Postives = 102/105 (97.14%), Query Frame = 3
Query:  393 KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRK 707
            KT GMGA RKLKSHRR QRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRK
Sbjct:    3 KTHGMGAARKLKSHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRK 107          
BLAST of DN621154 vs. ExPASy Swiss-Prot
Match: RS232_ARATH (40S ribosomal protein S23-2 OS=Arabidopsis thaliana GN=RPS23B PE=2 SV=2)

HSP 1 Score: 204.912 bits (520), Expect = 3.446e-52
Identity = 100/105 (95.24%), Postives = 100/105 (95.24%), Query Frame = 3
Query:  393 KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRK 707
            KTRGMGAGRKLK  R  QRWADK YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRK
Sbjct:    3 KTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRK 107          
BLAST of DN621154 vs. ExPASy Swiss-Prot
Match: RS231_ARATH (40S ribosomal protein S23-1 OS=Arabidopsis thaliana GN=RPS23A PE=2 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 1.601e-49
Identity = 97/105 (92.38%), Postives = 98/105 (93.33%), Query Frame = 3
Query:  393 KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRK 707
            KTRGMGAGRKLK  R  QRWADK YKKS+ GNEWKKPFA SSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRK
Sbjct:    3 KTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWKKPFACSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRK 107          
BLAST of DN621154 vs. ExPASy Swiss-Prot
Match: RS23_LUMRU (40S ribosomal protein S23 OS=Lumbricus rubellus GN=RPS23 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.645e-44
Identity = 84/106 (79.25%), Postives = 91/106 (85.85%), Query Frame = 3
Query:  393 KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRK 707
            K RG+   RKLK+HRR QRW DK YKKSHLG  WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVP DGCLN+IEENDEVL+AGFGRK
Sbjct:    3 KPRGLRTARKLKNHRREQRWHDKDYKKSHLGTRWKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNFIEENDEVLVAGFGRK 108          
BLAST of DN621154 vs. ExPASy Swiss-Prot
Match: RS23_DERVA (40S ribosomal protein S23 OS=Dermacentor variabilis GN=RpS23 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.239e-43
Identity = 83/106 (78.30%), Postives = 90/106 (84.91%), Query Frame = 3
Query:  393 KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRK 707
            K RG+   RK +SHRR QRW DK YKK+HLG  WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVP DGCLNYIEENDEVL+AGFGRK
Sbjct:    3 KPRGLRTARKHRSHRRDQRWHDKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIEENDEVLVAGFGRK 108          
BLAST of DN621154 vs. ExPASy Swiss-Prot
Match: RS23_BRUMA (40S ribosomal protein S23 OS=Brugia malayi GN=rps-23 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.819e-43
Identity = 82/106 (77.36%), Postives = 92/106 (86.79%), Query Frame = 3
Query:  393 KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRK 707
            K +G+ A RKLK+HR+ QRW DK YKK+HLG  WK  PF  +SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVPNDGCLN+IEENDEVL+AGFGRK
Sbjct:    3 KPKGIRAARKLKTHRQAQRWNDKGYKKAHLGTRWKANPFGTASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRK 108          
BLAST of DN621154 vs. ExPASy Swiss-Prot
Match: RS23_SPOFR (40S ribosomal protein S23 OS=Spodoptera frugiperda GN=RpS23 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.895e-42
Identity = 80/106 (75.47%), Postives = 90/106 (84.91%), Query Frame = 3
Query:  393 KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRK 707
            K RG+   RK  +HRR QRWADK YKK+H+G  WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKK+ AFVP DGCLN+IEENDEVL+AGFGRK
Sbjct:    3 KPRGIRTARKHVNHRREQRWADKDYKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRK 108          
BLAST of DN621154 vs. ExPASy Swiss-Prot
Match: RS23_RAT (40S ribosomal protein S23 OS=Rattus norvegicus GN=Rps23 PE=2 SV=3)

HSP 1 Score: 172.555 bits (436), Expect = 1.895e-42
Identity = 82/106 (77.36%), Postives = 91/106 (85.85%), Query Frame = 3
Query:  393 KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRK 707
            K RG+   RKL+SHRR Q+W DK YKK+HLG   K  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVPNDGCLN+IEENDEVL+AGFGRK
Sbjct:    3 KCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRK 108          
BLAST of DN621154 vs. ExPASy Swiss-Prot
Match: RS23_PAPDA (40S ribosomal protein S23 OS=Papilio dardanus GN=RpS23 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.895e-42
Identity = 80/106 (75.47%), Postives = 90/106 (84.91%), Query Frame = 3
Query:  393 KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRK 707
            K RG+   RK  +HRR QRWADK YKK+H+G  WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKK+ AFVP DGCLN+IEENDEVL+AGFGRK
Sbjct:    3 KPRGIRTARKHVNHRREQRWADKDYKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRK 108          
The following BLAST results are available for this feature:
BLAST of DN621154 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS23_FRAAN5.680e-5598.1040S ribosomal protein S23 OS=Fragaria ananassa GN=... [more]
RS23_EUPES4.809e-5497.1440S ribosomal protein S23 OS=Euphorbia esula GN=RP... [more]
RS232_ARATH3.446e-5295.2440S ribosomal protein S23-2 OS=Arabidopsis thalian... [more]
RS231_ARATH1.601e-4992.3840S ribosomal protein S23-1 OS=Arabidopsis thalian... [more]
RS23_LUMRU2.645e-4479.2540S ribosomal protein S23 OS=Lumbricus rubellus GN... [more]
RS23_DERVA2.239e-4378.3040S ribosomal protein S23 OS=Dermacentor variabili... [more]
RS23_BRUMA3.819e-4377.3640S ribosomal protein S23 OS=Brugia malayi GN=rps-... [more]
RS23_SPOFR1.895e-4275.4740S ribosomal protein S23 OS=Spodoptera frugiperda... [more]
RS23_RAT1.895e-4277.3640S ribosomal protein S23 OS=Rattus norvegicus GN=... [more]
RS23_PAPDA1.895e-4275.4740S ribosomal protein S23 OS=Papilio dardanus GN=R... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06F05_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621154 ID=DN621154; Name=DN621154; organism=Citrus sinensis; type=EST; length=707bp
GCGTCCTCTTGCAACTCTCAAGCTCCAAAGTCGTTCGTTACAGTCAAAAA
TCCTCTTCGTAACGCCAACATGGGGTAAGGTTTCTCATTTCCTCTGATAG
TGTTTGTTTCTCTAGAAAGCTCAAAACTTTTTGAGAAAATTTTGTTTGTT
CTCGTGTGTTTTTTTTTATTATAGAGATCGCTATTGTTAATGACTAAATT
TGATTGTTATTTTTTTAAAAAAAATTAAGTAGTGAAAGTGTTTCATAAAT
TGCGAGTGCGTTTGCTAGCGGTAGAAATTAATTTGATTTGCAGAATATGG
ATTGGCCGGTGATGTGAGAATTTATATTTGCTACTCTTGATGGGTTTGCT
TTAAATCCATCTGATGATTCTTATCCACCAAGATCTCTGAGGAAGACACG
TGGAATGGGAGCGGGTCGCAAGCTGAAGAGCCACCGCAGAAGACAAAGGT
GGGCTGATAAGTCATACAAGAAATCCCACCTTGGCAATGAATGGAAGAAG
CCATTTGCTGGCTCTTCCCATGCAAAAGGCATTGTTCTTGAGAAAATCGG
TATCGAGGCAAAGCAGCCCAACTCCGCTATCAGAAAATGTGCTCGAGTTC
AGCTGATCAAGAATGGAAAGAAGATTGCAGCTTTCGTACCAAACGATGGT
TGTTTGAACTACATTGAAGAAAATGACGAGGTACTTATTGCAGGATTTGG
TCGAAAG
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